Camelia, the Perl 6 bug

IRC log for #bioclipse, 2007-08-28

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All times shown according to UTC.

Time Nick Message
05:23 masak joined #bioclipse
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09:10 olas joined #bioclipse
09:11 olas morning
09:11 jonalv hi
09:11 masak morning
09:11 egonw hi olas
09:11 egonw olas: might you send me a copy of the cover letter you used for the BMC Bioinformatics Bioclipse pub?
09:12 egonw need an example...
09:12 olas sure
09:12 olas it is really nothing much
09:12 olas but I will send it
09:14 olas should I use your gmail?
09:14 olas egonw?
09:15 * olas is using egonw's gmail
09:15 egonw thanx
09:15 egonw was chatting on #cdk
09:22 egonw olas: got it, thanx
10:31 olas left #bioclipse
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11:32 edrin joined #bioclipse
11:32 edrin hallo
11:34 egonw hi edrin
11:34 edrin hi egonw
11:34 egonw edrin: I am going to write a few SOAP services...
11:34 egonw and picking a lib..
11:34 edrin ah
11:34 egonw was thinking on that which comes with J6...
11:34 egonw any comments?
11:34 edrin interesting
11:35 edrin just a sceond
11:37 edrin this is the JAX-WS 2.0, right?
11:37 egonw yes
11:40 edrin i think that's a good idea
11:41 edrin but you could also use the JAX-WS of java 5.0
11:41 egonw that comes with those handy wsgen command line tools too?
11:41 egonw and builtin webserver?
11:42 edrin i think sp
11:43 edrin but i must admit, this web services standarts are somehow very confusing
11:43 edrin i am back in 15 minutes
11:43 egonw yeah, I know
11:43 egonw not that last bit though
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12:06 egonw hi exitium
12:09 exitium hi
12:11 egonw you're begert, or in the same group as begert?
12:20 exitium i´m entzian
12:38 olas left #bioclipse
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12:39 edrin egonw: as far as I understood it, other "libraries" also support the jax-ws stuff as they usually depend on these libraries, too
12:40 egonw ack, sounds good
12:41 edrin but i am no sure what library i could recommend at the moment. definitely not axis 1! there are now release candidates of the apache cxf library (a merge of the xfire library and celtix) and there is axis 2
12:41 edrin http://incubator.apache.org/cxf/
12:42 egonw I'm not so fond of the apache java libs
12:42 edrin i think these libraries are built around the java libs...
12:42 egonw try to avoid them
12:46 edrin ok
12:46 edrin https://jax-ws.dev.java.net/faq/index.html
12:46 edrin that's interesting
12:46 edrin what kind of SOAP based web services do you want to export?
12:46 egonw around mass spectroscopy, using the CDK
12:47 edrin ah
12:47 edrin in my sparetime i continued working on the web service over xmpp stuff
12:47 olas I really like the Eclipse WTP for WS generation
12:47 edrin i am writing now a client library for it
12:47 olas but it had only support for axis a while ago...
12:47 edrin + plugin for bioclipse
12:48 olas great!
12:48 olas edrin: are you using the new server for it? pele?
12:48 edrin olas: i will
12:48 edrin but not yet
12:48 olas great
12:48 egonw edrin: sounds very good... I mentioned it to our local BioMOBY/SOAP guy, and he was much impressed with SOAP over XMPP
12:48 olas I am thinking of setting up a BioMoby server on pele
12:48 olas tailored for Bioclipse
12:49 edrin do you mean our XMPP Extension Proposal?
12:49 edrin olas: i think this would be good
12:50 edrin egonw: what did you show to him?
12:50 egonw did not show anything...
12:50 edrin ok
12:50 egonw but he is familiar with the problems of SOAP
12:50 egonw so, appreciated the advantages
12:52 edrin olas: did you notice this wiki of the embrace network? they finally set up a wiki page with a list of all involved/available web services
12:52 edrin http://www.embracegrid.inf​o/dokuwiki/doku.php?id=wp2
12:53 lambdabot2 Title: wp2 [EMBRACE Wiki]
12:53 edrin egonw: ah :)
12:54 edrin but a key message of this wiki list of more than 100 bioinformatics webservices is also: 99% are still axis 1 compatible only! (RPC/encoded style)
12:57 olas right...
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13:08 edrin joined #bioclipse
13:08 edrin hm :)
13:08 edrin i just run psi here :)
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20:19 CIA-36 bioclipse: shk3 * r3724 /trunk/plugins/net.bioclipse.spectru​m/src/net/bioclipse/plugins/bc_spect​rum/wizards/NewSpectrumWizard.java: refactoring
20:20 CIA-36 bioclipse: shk3 * r3725 /trunk/playground/plugins/net.bioclipse.nmrshift​db/src/net/bioclipse/wizards/PredictWizard.java: still not working

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