Camelia, the Perl 6 bug

IRC log for #bioclipse, 2007-09-25

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All times shown according to UTC.

Time Nick Message
05:42 thomas_ku joined #bioclipse
07:35 jonalv joined #bioclipse
07:45 CIA-31 joined #bioclipse
07:52 CIA-13 joined #bioclipse
07:56 CIA-13 bioclipse: jonalv * r3816 /trunk/playground/plugins/net.biocl​ipse.structuredb/src/net/bioclipse/​structuredb/domain/BaseObject.java: Added timestamps for created and edited
07:58 CIA-13 bioclipse: jonalv * r3817 /trunk/playground/plugins/net.bioclipse.structure​db/src/net/bioclipse/structuredb/persistency/dao/ (6 files): Added structureDao and UserDao
07:58 CIA-13 bioclipse: jonalv * r3818 /trunk/playground/plugins/net.biocl​ipse.structuredb/src/net/bioclipse/​structuredb/persistency/mapping/: removed one file per table mapping
08:00 CIA-13 bioclipse: jonalv * r3819 /trunk/playground/plugins/net.bioc​lipse.structuredb/src/net/bioclips​e/structuredb/persistency/tables/ (BaseObject.sql User.sql): fixed some minor errors in tables
08:00 CIA-13 bioclipse: jonalv * r3820 /trunk/playground/plugins/net.bioclip​se.structuredb/src/log4j.properties: Added log4j.properties file
08:01 CIA-13 bioclipse: jonalv * r3821 /trunk/playground/plugins/net.bioclipse.​structuredb/src/applicationContext.xml: added the new dao beans
08:02 CIA-13 bioclipse: jonalv * r3822 /trunk/playground/plugins/ne​t.bioclipse.structuredb/src/ (sqlMap.xml sqlMapConfig.xml): Changed to on big mapping file
08:02 CIA-13 bioclipse: jonalv * r3823 /trunk/playground/plugins/net.bioclipse​.structuredb/tests/net/bioclipse/struct​uredb/persistency/dao/IGenericDao.java: removed IGenericDao from the tests. It should be in src
08:05 olas joined #bioclipse
08:26 egonw joined #bioclipse
08:57 masak joined #bioclipse
09:02 olas hi masak
09:03 masak olas: hi
09:30 CIA-13 bioclipse: egonw * r3824 /trunk/plugins/net.bioclipse.tutorial.qsar/ (32 files in 18 dirs): Added infrastructure for a QSAR tutorial
09:31 CIA-13 bioclipse: egonw * r3825 /trunk/plugins/net.bioclipse.tutorial.qsar/bin/: Forgot to remove the bin dir upon copy.
09:39 CIA-13 bioclipse: egonw * r3826 /trunk/plugins/net.bioclipse.tutoria​l.qsar/src/net/bioclipse/tutorials/ (2 files in 2 dirs): Removed obsolete classes.
09:39 CIA-13 bioclipse: egonw * r3827 /trunk/plugins/net.bioclipse.tutorial.qsar/src/n​et/bioclipse/tutorials/workshop/QSARPlugin.java: Fixed a trivial compile error: wrong constructor name.
10:13 CIA-13 bioclipse: egonw * r3828 /trunk/plugins/net.bioclipse.data.bl​ueobelisk/data/chemical-structures/ (544 files in 31 dirs): Updated to Chemical Structures 2.0.1: fixes CML syntax problems, and I hope they now properly work with the QSAR engine
10:51 CIA-13 bioclipse: egonw * r3829 /trunk/plugins/net.bioclipse.statistics/sr​c/net/bioclipse/model/MatrixResource.java: Fixed an ArrayIndexOutOfBoundsException: files may be empty (stupid, but happens). It should create an empty matrix then.
10:55 CIA-13 bioclipse: egonw * r3830 /trunk/plugins/net.bioclipse.descriptor/src/net​/bioclipse/jobs/DescriptorCalculationJob.java: A bit more verbose: output how many resources will be processed.
11:14 claes_a joined #bioclipse
11:27 CIA-13 bioclipse: egonw * r3831 /trunk/plugins/net.bioclipse.data.bl​ueobelisk/data/chemical-structures/ (17 files in 17 dirs): Removed index files
11:31 CIA-13 bioclipse: egonw * r3832 /trunk/plugins/net.bioclipse.​descriptor/src/net/bioclipse/ (2 files in 2 dirs): Fixed taking multiple resources into account
11:42 CIA-13 bioclipse: egonw * r3833 /trunk/plugins/net.bioclipse.tutorial.qsar/ (4 files in 2 dirs): Completed calculation cheat sheet tutorial
13:12 egonw bbl
14:19 masak joined #bioclipse
14:21 jonalv joined #bioclipse
14:49 CIA-13 bioclipse: jonalv * r3834 /trunk/playground/plugins/​net.bioclipse.structuredb/ (9 files in 4 dirs): Two tests fails. I can't seem to get anything except but null from the database for the moment. The rest of the tests die horrible in errors...
16:20 CIA-13 bioclipse: jonalv * r3835 /trunk/playground/plugins/​net.bioclipse.structuredb/ (8 files in 3 dirs):
16:20 CIA-13 bioclipse: One dao test passes. It tests that a set of libraries can be persisted. And that
16:20 CIA-13 bioclipse: they all come back from persisting. They don't come back completly for the
16:20 CIA-13 bioclipse: moment. (The creator field among others is null after they have been loaded) but
16:20 CIA-13 bioclipse: the tests only checks that all of them comes back not that the whole of them
16:20 CIA-13 bioclipse: do... :)
20:11 CIA-31 joined #bioclipse

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