Camelia, the Perl 6 bug

IRC log for #bioclipse, 2007-09-27

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All times shown according to UTC.

Time Nick Message
06:13 egonw joined #bioclipse
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09:23 CIA-31 bioclipse: ospjuth * r3849 /trunk/plugins/net.bioclipse/src/net/​bioclipse/BioclipseApplication.java: Renewed deprecated method calls
09:23 CIA-31 bioclipse: ospjuth * r3850 /trunk/plugins/net.bioclipse​/src/net/bioclipse/actions/ (AddExtensionsAction.java UpdateAction.java): Updated names of update actions
09:28 egonw olas: I'm quite busy, but wanted to add a QSAR screenshot to the iwki...
09:28 egonw which failed, because of an "Unable to open file for write" error
09:28 egonw (just to let you know)
10:23 thomas_ku joined #bioclipse
11:00 olas joined #bioclipse
11:00 olas egonw: I uploaded images recently
11:00 olas strange that it doesn't work
11:01 olas please send me the file and I'll take care of it
11:06 olas egonw: on what wiki page?
11:06 egonw QSAR Plugin
11:06 olas ok
11:06 egonw btw, sent the image
11:09 olas now in wiki
11:09 olas worked just fine
11:10 olas Upload file
11:10 egonw thanx
11:10 egonw btw, do you like it?
11:10 olas yes, very nice
11:10 olas how stable is it?
11:10 egonw quite stable
11:10 olas great
11:10 egonw no idea what happens if you run it against cmlspect files though :)
11:11 egonw or JCAMP files...
11:11 egonw it does not check formats yet
11:11 olas ack
11:11 egonw please email me how I can check the IBioResource type
11:11 egonw a check would be simple to add
11:11 egonw ... then
11:11 egonw next step is the GridEditor...
11:11 egonw with column names
11:12 egonw and row names
11:12 egonw and a widget which can scatter plot to columns against each other (or two rows)
11:31 CIA-31 bioclipse: ospjuth * r3851 /trunk/plugins/net.bioclipse/src/n​et/bioclipse/BioclipsePlugin.java: Stub to enable online update on startup. Not used yet as not restricted to bioclispe update sites only but contacts eclipse sites as well
11:31 CIA-31 bioclipse: ospjuth * r3852 /trunk/plugins/net.bioclipse/src/net/​bioclipse/actions/UpdateAction.java: Update action is restricted to only Bioclipse update sites
12:12 masak joined #bioclipse
12:36 masak @yarr
12:36 masak hm, no lambdabot...
12:40 jonalv yea where is it?
12:41 masak dunno, I asked dons at #haskell about it
12:41 masak @where lambdabot :)
12:43 EskilA joined #bioclipse
12:49 edrin joined #bioclipse
12:50 edrin hello
12:50 egonw hi edrin
12:50 edrin hi egonw
12:50 egonw someone asked about creating IBIoResources with Rhino
12:50 egonw did he post that question on the ML?
12:50 * egonw is not sure...
12:51 jonalv Whats the ML?
12:51 edrin hello olas
12:51 jonalv ah mailing list :)
12:51 edrin i did not notice this question on the mailing list
12:52 jonalv I will tell Cleas to post it on the mailing list
12:52 edrin about the bioclipse 2 design. what do you think, we might continue with development of Bioclipse1 while we design Bioclipse2 ?
12:53 jonalv absolutely
12:53 edrin especially because bioclipse2 is not thought to be backwards compatible
12:56 jonalv I guess it is a good idea to have bioclipse2 in mind when doing new stuff for bioclipse1 but since the bioclipse2 design process has only started that might not be so easily done (yet)
12:58 edrin I don't see a reason to start/continue development for bioclipse1 if the stuff has no chance to reach user-land
12:58 edrin it's a dilemma
12:59 jonalv Hm I see your point but hopefully the work to get things working in Bioclipse2 wont be too bad
13:03 CIA-31 bioclipse: jonalv * r3853 /trunk/playground/plugins/​net.bioclipse.structuredb/ (2 files in 2 dirs): Reworked the mapping structure. Realised that the Users password get's md5 encrypted one more time upon loading from database. Not good. Will have to change behavior of constructor or something...
13:23 CIA-31 bioclipse: jonalv * r3854 /trunk/playground/plugins/​net.bioclipse.structuredb/ (3 files in 3 dirs): All UserDao and LibraryDao tests except for update which I haven't started with yet now passes. As for Structure I am still not persisting the fingerprint and maybe some other stuff aswell.
13:25 EskilA_ joined #bioclipse
14:53 CIA-31 bioclipse: jonalv * r3855 /trunk/playground/plugins/​net.bioclipse.structuredb/ (5 files in 3 dirs): All dao tests pass for User and Library. Next thing is persisting all fields of a structure.
15:11 CIA-31 bioclipse: biocoder * r3856 /trunk/plugins/net.bioclipse.statistics/src/​net/bioclipse/editors/MatrixGridEditor.java: Worked on data sorting for plotting
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16:26 CIA-31 bioclipse: jonalv * r3857 /trunk/playground/plugins/ne​t.bioclipse.structuredb/src/ (3 files in 3 dirs):
16:26 CIA-31 bioclipse: Worked on persisting of structure. For the moment I solved the fingerprint
16:26 CIA-31 bioclipse: persisiting with a string of 1's and 0's this can be optimised later on. Had an
16:26 CIA-31 bioclipse: Eclipse-crash and now it complains about not finding a class. Not sure what
16:26 CIA-31 bioclipse: happend. Maybee it's only something on my computer but probably this commit will
16:26 CIA-31 bioclipse: contain the error...
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23:10 Bokoros http://tubeimage.com/viewer.php?act=rat​e_it&file=x7o3ydsiwmvc6pnvqyd3.jpg
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