Camelia, the Perl 6 bug

IRC log for #bioclipse, 2007-10-16

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All times shown according to UTC.

Time Nick Message
04:51 thomas_ku joined #bioclipse
07:17 jonalv joined #bioclipse
07:34 EskilA joined #bioclipse
08:19 olas joined #bioclipse
08:30 masak joined #bioclipse
09:52 * jonalv food
10:04 bjarni joined #bioclipse
10:04 bjarni masak: ping
10:20 viklund joined #bioclipse
10:44 olas hi viklund
10:44 viklund hello
10:45 olas any progress with the interfaces?
10:45 viklund maybe, I have a small mockup working
10:46 viklund I don't know about the WSDL though, perl dosn't parse it (The WSDL parser in the SOAP module dosnt work)
10:47 viklund here it is: http://artedi.ebc.uu.se/course/soap_yn00.wsdl
10:47 viklund it dosnt really run yn00
10:47 viklund only makes a filelookup ;)
10:49 olas no time to test it now
10:49 olas tomorrow earliest
10:49 bjarni olas: priv
10:51 viklund sound good
10:51 viklund I have no time to fix anything anyway ;p
10:55 bjarni um
10:55 bjarni olas: ping
10:55 bjarni masak: ping
11:06 olas ping
11:06 olas pong
11:06 olas bjarni: sent you a mail
11:06 egonw joined #bioclipse
11:13 masak bjarni: pong
11:14 bjarni masak: < olas> bjarni: sent you a mail
11:14 bjarni :-)
11:15 masak okiedokie
11:23 thomas_ku joined #bioclipse
12:35 thomas_ku joined #bioclipse
12:50 edrin joined #bioclipse
12:50 edrin hello again
12:50 * edrin still stressed
12:51 masak hi edrin
12:52 edrin maybe someone has access to the following article: http://www.ncbi.nlm.nih.gov/sites/entrez?Db=pubm​ed&amp;Cmd=ShowDetailView&amp;TermToSearch=17562​452&amp;ordinalpos=2&amp;itool=EntrezSystem2.PEn​trez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum
12:52 masak edrin: did I mention I'm thinking of building a command line console for Bioclipse?
12:52 edrin ?
12:52 masak edrin: I'll check
12:53 edrin masak: you did not mention this yet. but for professional users this might be a good idea because you could edit the bioclipse objects with it
12:54 edrin the mozilla rhino engine hass support for this btw
12:54 masak edrin: yes, that's what I thought
12:54 masak edrin: support in what way?
12:54 edrin but take care that the "normal" users don't touch it. they might get confused by consoles... :)
12:57 edrin masak: you probably mean something like this: http://www.mozilla.org/rhino/tutorial.html#expose
12:57 edrin masak: do you have access to this article btw. ?
12:58 edrin whoa, one week, than I am done with my thesis :D
12:58 edrin I hope my master accepts it then
13:01 masak edrin: article: don't know if I have access
13:01 masak I get a page
13:01 masak with an abstract
13:02 masak edrin: normal users: I know olas has plans with them and the console, too
13:02 edrin masak: ic, is there an option to "buy" it for US$32.00 plus VAT ?
13:03 edrin ah
13:03 masak edrin: no such option
13:03 edrin hm...
13:03 masak no obvious way at all to proceed
13:03 masak I'm not very used to pubmed
13:03 masak the name of the journal is a js link
13:04 edrin ah
13:04 edrin you are still in pubmed?
13:04 masak yes
13:04 masak same page
13:04 masak the one you sent a link to
13:05 edrin on the right upper corner there is a graphics..."informa world" ->  click it...
13:05 edrin you will be directed to another webpage
13:05 masak ok
13:05 edrin there you will see if you have access or have to buy the article
13:06 masak I have access
13:06 masak I will email it to you
13:06 masak please /msg your address
13:06 edrin cool
13:06 edrin :)
13:07 masak mail sent
13:07 edrin :))
13:07 egonw edrin: you got thearticle yet?
13:07 edrin masak just sent it i think
13:07 egonw ok, good
13:08 edrin but thank you very much
13:09 masak edrin: I will now look at the Rhino link you sent
13:09 masak the real challenge so far is building a CLI in Eclipse
13:09 masak seems to be the first time someone does that
13:10 edrin really??
13:11 masak edrin: I may have missed an abvious case, but yes, seems there are no CLIs built in Eclipse
13:14 edrin ok, thanks for the article
13:14 masak np
13:36 olas joined #bioclipse
13:38 olas bjarni: around?
13:38 olas hi edrin
13:39 edrin hello olas
13:49 CIA-31 bioclipse: carl_masak * r3981 /trunk/plugins/net.bioclipse.rhino/src/net/bi​oclipse/plugins/bc_rhino/ScriptingTools.java:
13:49 CIA-31 bioclipse: [ScriptingTools.java]
13:49 CIA-31 bioclipse: * typo hunt
13:49 CIA-31 bioclipse: * if statement -> ?:
14:26 egonw left #bioclipse
14:56 CIA-31 bioclipse: ospjuth * r3982 /trunk/playground/plugins/net.bio​clipse.biomoby/src/net/bioclipse/ (4 files in 3 dirs): Complete rewrite of BioMoby GUI generation up to Primary Inputs.
14:56 olas left #bioclipse
15:27 edrin left #bioclipse
17:49 egonw joined #bioclipse
19:34 CIA-31 bioclipse: shk3 * r3983 /trunk/plugins/net.bioclipse.spectrum/ (doc/charts.html src/spok/gui/SpectrumChartFactory.java): started hightlighting in peak view
21:00 CIA-31 bioclipse: egonw * r3984 /trunk/plugins/net.bioclipse.cdk.descriptor/src/ne​t/bioclipse/extensions/CDKDescriptorProvider.java: Return all vector values
21:27 CIA-31 bioclipse: shk3 * r3985 /trunk/plugins/net.bioclipse.spectrum/src/ (2 files in 2 dirs): avoids npes

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