Camelia, the Perl 6 bug

IRC log for #bioclipse, 2007-10-17

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All times shown according to UTC.

Time Nick Message
05:32 egonw joined #bioclipse
06:59 edrin joined #bioclipse
06:59 edrin good morning
07:18 egonw hi edrin
07:19 egonw edrin: I mentioned your XMPP-WS stuff during the Taverna meeting:
07:20 egonw mom... looking up URL
07:20 edrin ah!?
07:20 edrin and what did they say?
07:20 egonw http://taverna.sourceforge.ne​t/index.php?doc=workshop.html
07:20 edrin mom
07:20 egonw not too much unfortunately
07:26 egonw but at least the word is out
07:26 egonw there seemed to be interest though...
07:26 egonw would be good if you would write up something about it...
07:26 egonw because you got a basic implementation, right?
07:26 egonw something for Nature Precedings?
07:30 edrin oh?
07:30 edrin ok
07:31 edrin i think i will finish my last version of my thesis this week, so i can give it to my master for his (pre)final corrections... so I can do this next week i think
07:34 egonw oh, that sounds good... that will be relieve when that's finished :)
07:35 edrin yeah
07:36 jonalv joined #bioclipse
07:41 olas joined #bioclipse
07:43 egonw olas: QSAR support is getting rather good now
07:44 egonw I also solved the problem that not all descriptor values were returned, but they are now
07:44 egonw and my new laptop is really super fast :)
07:45 egonw when using Eclipse -> get yourself 2GB memory
07:45 egonw it's amazing how much faster it is then
07:46 egonw mmm... maybe some JOELib hacking...
07:46 egonw yeah, I feel like doing that...
07:50 CIA-31 bioclipse: egonw * r3986 /trunk/playground/plugins/net.bioclipse.joelib/ (6 files in 3 dirs): Added playground for the GPL-ed JOELib plugin
07:52 egonw ah, also almost a Bioclipse milestone... the 4000th commit
08:01 CIA-31 bioclipse: egonw * r3987 /trunk/playground/plugins/net.bioclipse.joelib/ (8 files in 6 dirs): OK, the lib plugin seems in OK state
08:04 olas egonw: 4000 is rather good :-)
08:04 olas great to see the QSAR progress
08:05 olas I would really like a Web service descriptor calculation as a reference
08:05 olas do we have a service already set up that we could consume in a DescriptorProvider?
08:06 egonw SOAP service?
08:06 egonw wrapping bioclipse code?
08:07 olas no
08:07 olas set up a DescriptorProvider that calculates descriptors via a Web service
08:08 olas which could be implemented by anything
08:08 CIA-31 bioclipse: egonw * r3988 /trunk/playground/plugins/net​.bioclipse.joelib.descriptor/ (. .project META-INF/MANIFEST.MF plugin.xml): Setting up a JOELib-based IDescriptorProvider
08:08 egonw olas: ah... interesting...
08:08 egonw no, we don't have something like that
08:08 olas no service at all?
08:08 olas rajarshi has no service like that?
08:08 egonw I thikn he has...
08:08 egonw but we got no such plugin
08:08 olas then we could just consume that as a reference
08:09 egonw why as reference?
08:09 egonw olas: btw, I updated the CDK in net.bioclipse.cdk
08:09 olas so that others who like to hook into their Web service based descriptors can have that as a starting poiont
08:09 olas ok
08:09 egonw eg. SDG should be much better in BC now
08:09 olas great
08:09 egonw olas: ok, yes, that would be interesting...
08:09 egonw but don't have time for that
08:11 olas no prob
08:11 olas neither have I :-)
08:12 olas might look at it some day
08:12 olas but not today
08:12 CIA-31 bioclipse: egonw * r3989 /trunk/playground/plugins/net.b​ioclipse.joelib.descriptor/src/ (4 files in 3 dirs): Reorganizing...
08:21 CIA-31 bioclipse: egonw * r3990 /trunk/playground/plugins/net​.bioclipse.joelib.descriptor/ (5 files in 3 dirs): OK, finished reorganization CDK template for JOELib.
08:24 egonw OK, time to boot Bioclipse
08:30 CIA-31 bioclipse: egonw * r3991 /trunk/playground/plugins/net​.bioclipse.joelib.descriptor/ (2 files in 2 dirs): OK, framework seems working. Now to add an actually JOELib descriptor. Me is diving into the JOELib documentation.
08:48 masak joined #bioclipse
08:56 egonw OK, JOELib2 was a bad choice...
08:56 egonw never matured it seems...
08:56 egonw going for JOELib1 nwo
09:01 CIA-31 bioclipse: egonw * r3992 /trunk/playground/plugins/net.bioclipse.joelib/ (META-INF/MANIFEST.MF jars/joelib.jar jars/joelib2.jar): Going for JOELib1 now
09:06 edrin joined #bioclipse
09:23 CIA-31 bioclipse: egonw * r3993 /trunk/playground/plugins/net.bioclipse.joelib/ (.classpath META-INF/MANIFEST.MF build.properties): Some tweaking.
11:53 olas joined #bioclipse
12:20 * jonalv is seriolusly planning to start blogging
12:20 jonalv Maybee I should call the blogg:
12:20 thomas_ku joined #bioclipse
12:21 jonalv "How I learned to hate Hibernate"
12:21 olas :-)
12:21 jonalv or "How I learned to stop worrying and love ORM"
12:22 jonalv I have yet again realised that my solution breaks the equals / hashContract
12:22 jonalv Or rather mmy solution breaks the equals / hashcontract when Hibernate lazy loading proxies are introduced...
12:51 egonw joined #bioclipse
13:20 * viklund : Feel the power of the Command Line
13:30 * masak has been fiddling with (building) command lines all day
13:41 olas joined #bioclipse
14:31 edrin masak: found a pipe to have your command interface?
14:32 masak edrin: a pipe? as in Magritte?
14:32 * masak is not sure he understands
14:33 egonw joined #bioclipse
14:33 edrin from my c++ time i remember that command input&utput was done in pipes...
14:33 masak ah ha
14:33 masak yes, that's probably not a problem
14:34 masak the important thing is actually being able to create a sane UI part at all
14:34 masak working on that now
14:34 edrin http://forum.java.sun.com/thread.jspa?​threadID=439646&messageID=1987550
14:35 edrin ah ok
14:35 edrin maybe use the eclipse console?
14:35 masak edrin: well, yes and no
14:35 masak edrin: pipes: not sure I need the OS for this
14:35 edrin ok
14:35 edrin me must go again
14:35 masak okie
17:50 olas left #bioclipse
20:12 edrin left #bioclipse

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