Camelia, the Perl 6 bug

IRC log for #bioclipse, 2007-10-19

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All times shown according to UTC.

Time Nick Message
06:11 egonw joined #bioclipse
07:15 olas joined #bioclipse
07:49 olas joined #bioclipse
08:02 jonalv joined #bioclipse
09:06 egonw joined #bioclipse
09:13 masak joined #bioclipse
09:19 EskilA joined #bioclipse
09:38 viklund > let fibs = 1:1:zipWith (+) fibs (tail fibs) in take 20 fibs
09:39 masak lambdabot is gone again :(
09:39 viklund ):
09:39 * masak too, lunch
11:02 olas left #bioclipse
11:02 olas joined #bioclipse
11:20 CIA-31 bioclipse: ospjuth * r3996 /trunk/playground/plugins/net.bio​clipse.biomoby/src/net/bioclipse/ (7 files in 3 dirs): Complete rewrite of service invocation wizard and action that finally works. Currently does not take secondary parameters as input but uses default.
11:39 viklund carl?
11:40 viklund masak?
11:42 viklund hmm
11:42 viklund whatever..
11:42 olas :-)
11:56 CIA-31 bioclipse: ospjuth * r3997 /trunk/playground/plugins/net.bio​clipse.biomoby/src/net/bioclipse/ (2 files in 2 dirs): Initializes secondaryData in wizard
12:00 CIA-31 bioclipse: ospjuth * r3998 /trunk/playground/plugins/net.bio​clipse.biomoby/src/net/bioclipse/ (9 files in 3 dirs): Some refactoring of classes
12:00 CIA-31 bioclipse: ospjuth * r3999 /trunk/playground/plugins/net.bio​clipse.biomoby/src/net/bioclipse/ (7 files in 3 dirs): Some more refactoring of classes
12:04 CIA-31 bioclipse: ospjuth * r4000 /trunk/playground/plugins/net.bio​clipse.biomoby/src/net/bioclipse/ (10 files in 4 dirs): Package cleanup
12:04 olas WEEHOW! The 4000 commit for Bioclipse :-)
12:04 olas not bad
12:05 CIA-31 bioclipse: ospjuth * r4001 /trunk/playground/plugins/net.bioclip​se.biomoby/src/net/bioclipse/biomoby/ (8 files in 2 dirs): Moved tests to correct package
12:05 CIA-31 bioclipse: ospjuth * r4002 /trunk/playground/plugins/net.bioclipse.​biomoby/src/net/bioclipse/biomoby/tests/ (3 files): Added more tests that currently fails
12:35 egonw joined #bioclipse
12:41 egonw olas: congratulations with breaking the 4000 barrier ! :)
12:42 olas haha :-)
12:42 olas Found a really annoying bug now :-(
12:43 egonw whos fault?
12:43 olas mine I suppose
12:43 olas (it's in biomoby)
12:43 olas but the BioMoby design is to blame IMO
12:44 egonw who can recommend a nice game to play over the internet... (other than xblast) ?
12:44 olas clustalw
12:44 olas :-)
12:45 olas oh, you didn't say blastx
12:45 egonw :)
12:46 egonw some 300KB/s wireless here...
12:46 egonw very nice...
12:46 egonw bit more even
12:46 egonw olas: question...
12:47 egonw is there a formal way to express a license with a plugin?
12:47 egonw or just with a feature?
12:47 egonw the JOELib plugin is GPL...
12:57 masak viklund: pong
12:57 viklund does wget exist on OS X?
12:57 viklund in the base install
12:57 viklund ?
12:57 masak no
12:57 masak but easily attainable through ports
12:57 masak s/ports/MacPorts/
12:58 masak which is easily attainable online :)
13:02 olas egonw: features is the common way
13:02 olas if different licenses, then it should go in different features
13:02 egonw :(
13:02 olas why?
13:02 egonw then we need a QSAR-GPL feature or so?
13:03 olas or a feature-joelib
13:03 olas that seems more appropriate
13:03 olas but hey
13:03 olas meybe the license for the feature can specify both EPL and GPL?
13:04 olas That is one possibility
13:04 olas ask on #eclipse
13:33 CIA-31 bioclipse: ospjuth * r4003 /trunk/playground/plugins/net.bioclip​se.biomoby/src/net/bioclipse/biomoby/ (4 files in 2 dirs): Implemented secondaryParameters in service invocation.
13:54 masak ah. those on #haskell say that lambdabot has fallen off the net, so it's not our fault it isn't here
14:13 egonw joined #bioclipse
14:14 viklund masak: It's back...
14:14 viklund no, that was another one
14:14 viklund rahaskella...
14:24 masak viklund: yes
14:27 egonw http://chem-bla-ics.blogspot.com/2007/10/​bob-improved-pov-ray-export-of-jmol.html
14:28 masak egonw: nice
14:29 masak I'm a retired POVRay user
14:29 masak it's a pleasant platform
14:37 egonw masak: feed back on the created .pov files is much appreciated..
14:37 egonw and Bob actually needs some input on font usage
14:37 egonw and another thingy..
14:37 masak egonw: oh. ok
14:38 egonw ah, slabbing...
14:38 egonw that was the other thing...
14:38 egonw > My problem is figuring out how to correlate the fonts. Ideas welcome.
14:38 egonw > Does POV-Ray do automatic slabbing?
14:38 egonw that's what he wrote...
14:44 olas masak: I'm about to add PovRay support to Bioclipse :-)
14:45 olas egonw, masak: Then you'll give me feedback on that :-)
14:45 egonw olas: using the new Jmol?
14:46 masak olas: cool. sure.
14:46 olas is it in bioclipse?
14:46 egonw olas: no, not the latest of the latest
14:46 olas egonw: if not, please update jmol in Bioclipse to latest version
14:46 masak weekend &
14:46 egonw easier said than done...
14:46 egonw I think I need some input from Bob for that
14:47 olas has much changed in the jmol API?
14:47 olas well, please do it when you have time
14:54 egonw ha, the magic words... 'when you have time'...
15:00 olas I thought you had loads of time!
15:00 olas never busy
15:00 olas (if you are playing internet games :-))
15:02 egonw no one suggested something :(
15:02 egonw so stuck with aromaticity detection
15:03 olas :-)
15:12 egonw OK, enough for today... going offline
15:12 egonw bye
15:58 edrin joined #bioclipse
16:02 edrin hi
16:03 olas hi edrin
16:03 * olas is just about to leave
16:03 edrin hi olas
16:03 * edrin just about to come :)
16:03 edrin ah, one weekend
16:04 edrin i will give my stupid thesis for a *hopefully* final look to my supervisor
16:05 edrin at least i hope that it's almost done then
16:10 CIA-31 bioclipse: ospjuth * r4004 /trunk/playground/plugins/net.bioclip​se.biomoby/src/net/bioclipse/biomoby/ (5 files in 2 dirs): Adapted to work with DB retrieval (added namespaces). ResultWizard is hardcoded to one object, but works for single retrieval services (e.g. getKeggPathwayAsGif).
16:10 olas edrin: good luck
16:10 olas well, that's it for today
16:10 edrin hope...
16:10 olas Bye all!
16:11 olas left #bioclipse
16:11 edrin have a nice day
16:11 edrin weekend
16:29 edrin left #bioclipse

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