Camelia, the Perl 6 bug

IRC log for #bioclipse, 2007-10-24

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All times shown according to UTC.

Time Nick Message
06:29 viklund joined #bioclipse
07:49 jonalv joined #bioclipse
08:00 olas joined #bioclipse
08:42 masak joined #bioclipse
09:18 egonw joined #bioclipse
09:19 * bjarni wakes up
09:23 masak bjarni: morning
09:24 bjarni maurning
09:25 masak :)
09:25 masak we're heading out for lunch in a couple of minutes
09:25 * bjarni -> breakphast
09:26 masak so... maybe we'll converge after lunch?
09:26 bjarni black puddin, potatoes, two kinds of sausage, beans
09:26 bjarni yes
09:26 masak sounds like a filling breakphast
09:27 jonalv I think we are planning on taking another talk of bc2 design after lunch if you are interested.
09:29 olas bjarni: I got your papers for employment and security card
09:31 olas lets talk about them after 13
09:57 bjarni \o/
11:03 jonalv ppsala
11:08 * bjarni in da house
11:24 jonalv We need to move the Nebula grid widget jar in net.bioclipse.statistics into somewhere else because I need to use it in net.bioclipse.cdk.ui and I don't think it should depend on net.bioclipse.statistics. Any suggestions on where to put it?
11:25 jonalv I'm thinking of creating something like: net.bioclipse.util.nebulagridwidget or something like that...
11:25 egonw net.bioclipse.nebula ?
11:25 jonalv yes well
11:26 jonalv I am wondering if we souldn't like a misc top for stuff like this...
11:27 masak jonalv: but why?
11:27 jonalv but maybee net.bioclipse.nebula.gridwidget in that case because there are other nebula projects that we might want to use...
11:29 egonw jonalv: that makes sense
11:37 jonalv I shouldn't d othis in the playground right?
11:39 egonw no, this should go onto the update.bioclipse.net server
11:40 egonw so, put it in trunk/plugins
11:41 jonalv Hm it is already a eclipse plugin maybee we should use thier naming...
11:41 egonw no, use that plugin
11:41 jonalv Will come back to this...
11:41 egonw just copy their plugin source into bioclipse SVN
12:20 viklund joined #bioclipse
12:42 EskilA joined #bioclipse
13:08 jonalv egonw: HOw do you mean?
13:09 jonalv the best would be if we could point to their svn repo I think...
13:10 egonw ummm... with a svn:external ?
13:10 egonw that's a good idea
13:10 jonalv just realized that they are using cvs...
13:10 egonw ah :)
13:10 jonalv then it won't work right?
13:10 egonw but a copy is better anyway
13:11 egonw because then you have a fixed copy...
13:11 jonalv why?
13:11 egonw just put the CVS dirs in SVN too, then a copy is easily upgraded
13:11 egonw because of API changes...
13:11 jonalv yes...
13:11 egonw or they should be using tags properly...
13:11 jonalv but how do you perform the upgrade?
13:12 jonalv they are probably using stuff corectly
13:41 masak joined #bioclipse
13:57 viklund joined #bioclipse
14:07 CIA-18 bioclipse: ospjuth * r4043 /trunk/playground/plugins/net.bioclip​se.biomoby/src/net/bioclipse/biomoby/ (3 files in 2 dirs): Better handling of results in MobyObjectBytes and MobyObjectString. Still not perfect though.
14:39 * jonalv just realised that handling multiple databases with Spring and iBatis is really not so very simple :(
15:05 masak ping olas
15:14 olas pong
15:14 olas masak: pong
15:14 masak ah.
15:15 masak question: what does the scriptEngine extension point fo in net.bioclipse?
15:15 masak s/fo/do/
15:16 masak it's not script as in scripting languages, is it?
15:16 egonw allow registration of scripting engines...
15:16 egonw the only impl is currently the JmolScriptEngine...
15:16 masak egonw: in what sense?
15:17 masak ah, ok...
15:17 egonw by means of this EP... one can always request running a Jmol script
15:17 egonw without having to hard-code depend on the Jmol plugin
15:17 olas I am not sure that is a good pattern
15:17 olas listener should be better
15:18 CIA-18 bioclipse: jonalv * r4044 /trunk/playground/plugins/​net.bioclipse.structuredb/ (8 files in 4 dirs): Created business object StructuredbManager but ran into trouble with managing multiple datasources. Waiting for feedback from Spring forum now...
15:18 masak ok, just got thrown off by the name "script" :)
15:19 CIA-18 bioclipse: ospjuth * r4045 /trunk/playground/plugins/net.bioclipse.biomoby/ (META-INF/MANIFEST.MF about.ini build.properties): Updated build for inclusion in a feature
15:21 egonw olas: I can understand that the new design might replace the old one...
15:22 jonalv egonw: and what are your feelings about this "new design"?
15:22 egonw not sure what it looks like
15:22 egonw please email me with some pointers...
15:22 egonw got to make dinner now
15:23 jonalv hm trixy
15:23 jonalv I think most of the relevant stuff is on the wiki
15:23 jonalv egonw: Not todays talk though...
15:26 viklund joined #bioclipse
15:27 olas egonw: see wiki
15:27 olas almost all is there
15:34 olas left #bioclipse
16:07 CIA-18 bioclipse: carl_masak * r4046 /net.bioclipse.case-feature/: net.bioclipse.case-feature does not belong on this level
16:23 CIA-18 bioclipse: jonalv * r4047 /trunk/plugins/org.eclipse.nebula.widgets.grid/: Initial import.
16:23 CIA-18 bioclipse: jonalv * r4048 /trunk/plugins/org.eclipse.nebula.widgets.grid/ (10 files in 5 dirs): Initial import.
16:24 CIA-18 bioclipse: jonalv * r4049 /trunk/plugins/net.bioclipse.statistics/ (3 files in 3 dirs): Changed to use the jar file i org.eclipse.nebula.widgets.grid instead
16:31 CIA-18 bioclipse: jonalv * r4050 /trunk/plugins/net.bioclipse.statistics/ (3 files in 3 dirs): reverted into using the jar file in the project again. Things didn't work. Will look at this again at some other time.
18:21 edrin joined #bioclipse
18:21 edrin hi
18:22 edrin bjarni?
18:22 bjarni yes
18:29 edrin have we met before?
18:30 bjarni I guess that depends on who we are.
18:30 bjarni my name is bjarni :-)
18:49 edrin i am johannes
18:49 edrin have we met in uppsala?
20:15 bjarni sorry, i was away...
20:15 bjarni I don't know, I started working at bmc this monday...
20:16 bjarni other than that, I study computer science and am a member of update
20:47 edrin have to go
20:47 edrin good night

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