Camelia, the Perl 6 bug

IRC log for #bioclipse, 2007-10-26

| Channels | #bioclipse index | Today | | Search | Google Search | Plain-Text | summary

All times shown according to UTC.

Time Nick Message
07:13 olas joined #bioclipse
07:32 masak joined #bioclipse
07:50 olas joined #bioclipse
07:53 EskilA_ joined #bioclipse
08:01 egonw joined #bioclipse
08:04 jonalv joined #bioclipse
08:11 egonw joined #bioclipse
08:37 CIA-18 bioclipse: carl_masak * r4072 /trunk/playground/plugins/net.bioclipse.​expression/src/net/bioclipse/expression/ (Calculator.java FunctionBody.java):
08:37 CIA-18 bioclipse: [net.bioclipse.expression]
08:37 CIA-18 bioclipse: * started implementing dynamic function application
08:37 CIA-18 bioclipse: * changed interface of FunctionBody to accept SymbolicExpression[]
08:51 CIA-18 bioclipse: carl_masak * r4073 /trunk/playground/plugins/ (9 files in 3 dirs):
08:51 CIA-18 bioclipse: [Calculator.java]
08:51 CIA-18 bioclipse: * changed yet again the way functions accept parameters
08:51 CIA-18 bioclipse: [FunctionBody.java]
08:51 CIA-18 bioclipse: * reflected here too
08:51 CIA-18 bioclipse: [ast]
08:51 CIA-18 bioclipse: * Deleted the whole Functions hierarchy
09:03 CIA-18 bioclipse: jonalv * r4074 /trunk/playground/plugins/ (2 files in 2 dirs): Added test for adding a new function to the calculator
09:04 CIA-18 bioclipse: carl_masak * r4075 /trunk/playground/plugins/net.bioclip​se.expression.tests/src/net/bioclipse​/expression/tests/FunctionsTest.java:
09:04 CIA-18 bioclipse: [FunctionsTest.java]
09:04 CIA-18 bioclipse: * removed pesky @Override
09:08 jonalv tests rock!
09:08 * bjarni has gentoo installed
09:08 bjarni 31 hours awake, 16 asleep
09:09 CIA-18 bioclipse: carl_masak * r4076 /trunk/playground/plugins/net.bioclip​se.expression.tests/src/net/bioclipse​/expression/tests/VariablesTest.java:
09:09 CIA-18 bioclipse: [VariablesTest.java]
09:09 CIA-18 bioclipse: * added tests for case insensitivity
09:19 CIA-18 bioclipse: carl_masak * r4077 /trunk/playground/plugins/net.bioclipse.expressi​on/src/net/bioclipse/expression/Calculator.java:
09:19 CIA-18 bioclipse: [Calculator.java]
09:19 CIA-18 bioclipse: * added addVariable and addFunction methods
09:20 CIA-18 bioclipse: jonalv * r4078 /trunk/playground/plugins/ (4 files in 2 dirs):
09:20 CIA-18 bioclipse: Added enum paramatertype with the values ZERO_PARAMS, ONE_PARAMS, MULTI_PARAMS
09:20 CIA-18 bioclipse: Also wrote functionsbodyadaptor implementing getParamatertype and constructor taking paramtertype
09:20 CIA-18 bioclipse: carl_masak * r4079 /trunk/playground/plugins/net.bioclip​se.expression.tests/src/net/bioclipse​/expression/tests/VariablesTest.java:
09:20 CIA-18 bioclipse: [VariablesTest.java]
09:20 CIA-18 bioclipse: * fixed test
09:25 olas More commits!
09:25 olas Let's flood egonw's mailbox
09:26 bjarni herro
09:26 olas hero or hello?
09:26 bjarni hello
09:26 bjarni installing packages on the laptop now...
09:26 olas bjarni: any progress?
09:26 bjarni I'll spend a few hours during the weekend doing proper work :-)
09:27 bjarni but it boots gentoo just fine
09:27 olas good
09:27 masak bjarni: congrats
09:27 bjarni \o/
09:27 masak bjarni: I'll be interested in any news at all about R scripting
09:28 bjarni I think I'll start by looking at that plugin you found to see what can be reused
09:28 bjarni url plz
09:28 masak bjarni: coming
09:28 masak http://www.walware.de/goto/statet
09:29 masak I also got the url to the sources from the developer
09:29 masak looking...
09:29 olas bjarni: Would also be great if you could demo a sample JRI connection from a Java app started from inside Eclipse
09:29 bjarni olas: I'll look into it
09:29 olas great
09:29 bjarni damn that macbook is fast
09:30 bjarni that wasn't two minutes compiling the kernel :O
09:30 masak bjarni: sources: http://node8.cvsdude.com/trac/walware/statet svn repo: http://svn8.cvsdude.com/walware/statet
09:30 bjarni I was going to go do other things, and then it was finished
09:30 masak neat
09:35 CIA-18 bioclipse: carl_masak * r4080 /trunk/playground/plugins/net.bioclipse​.expression.tests/src/net/bioclipse/exp​ression/tests/CalculatorBaseTest.java:
09:35 CIA-18 bioclipse: [CalculatorBaseTest.java]
09:35 CIA-18 bioclipse: * added function 'log' since it's not native any more
09:37 CIA-18 bioclipse: carl_masak * r4081 /trunk/playground/plugins/net.bioclip​se.expression.tests/src/net/bioclipse​/expression/tests/FunctionsTest.java:
09:37 CIA-18 bioclipse: [FunctionsTest.java]
09:37 CIA-18 bioclipse: * corrected a few test assertions
09:41 olas left #bioclipse
09:41 olas joined #bioclipse
09:42 * olas is in the mood for even more coffee
09:42 olas or even lunch
09:43 masak yay! lunch!
09:44 CIA-18 bioclipse: jonalv * r4082 /trunk/playground/plugins/net.bioclipse.expres​sion.tests/src/net/bioclipse/expression/tests/ (CalculatorBaseTest.java FunctionsTest.java): Wrote tests for zero params, one param and multiparams functions
10:21 olas joined #bioclipse
10:45 bjarni argh
10:45 bjarni of course they called from the dentist when I was asleep and changed my appointment to november 28th
10:45 bjarni but I realise now that that isn't a good date...
10:47 jonalv lol
10:48 olas since when does the dentist call at night?
10:48 bjarni since night is defined loosely
10:48 bjarni as "when I slept"
10:49 * olas usually sleeps at night
10:50 bjarni I was up 30h, slept 16
10:54 bjarni I'm registering for the SNIC thing. is the department name "Pharmaceutical Bioscience" ?
10:54 jonalv what's the SNIC thing?
10:54 bjarni a conference
10:54 jonalv about?
10:54 bjarni nov 28-29 about uppmax
10:55 jonalv right
10:55 jonalv that's why the date wasn't great
10:55 olas bjarni: yes
10:55 olas correct dept
10:55 * jonalv was confused
10:56 * olas is not surpised
10:56 jonalv thanks...
10:56 jonalv :)
11:00 olas :-)
11:00 bjarni it isn't vlear whether they want my home address or the address of my work...
11:00 bjarni s/vl/cl/
11:02 olas write the work adress
11:02 olas address
11:03 bjarni which is? :-)
11:03 olas see www.farmbio.uu.se
11:03 bjarni thanks
11:03 olas Institutionen för farmaceutisk biovetenskap
11:12 CIA-18 bioclipse: ospjuth * r4083 /trunk/playground/plugins/​net.bioclipse.biomoby.ui/: Initial import.
11:15 CIA-18 bioclipse: jonalv * r4084 /trunk/playground/plugins/net.bioclipse.expres​sion.tests/src/net/bioclipse/expression/tests/ (CalculatorBaseTest.java FunctionsTest.java): Wrote test for syntactical check off colonnotation ( test(A1:C3) should expand to all variables in the box...)
11:17 CIA-18 bioclipse: ospjuth * r4085 /trunk/playground/plugins/​net.bioclipse.biomoby.ui/ (46 files in 12 dirs): Refactored BioMoby to a plugin containing BioMoby (net.bioclipse.biomoby) and one for the Bioclipse BioMoby UI (net.bioclipse.biomoby.ui) to allow for separate updates.
11:20 CIA-18 bioclipse: ospjuth * r4086 /trunk/playground/plugins/net.bioclipse.biomoby/ (24 files in 11 dirs): Reduced plugin to only contain BioMoby and external BioMoby jars. Current version from: 2007-10-26
11:22 CIA-18 bioclipse: ospjuth * r4087 /trunk/playground/plugins/net​.bioclipse.biomoby.ui/icons/ (13 files in 2 dirs): Added missing icons
11:22 CIA-18 bioclipse: ospjuth * r4088 /trunk/playground/plugins/net.bioclips​e.biomoby.ui/icons/wizard/run_wiz.png: Added missing icon
11:25 olas left #bioclipse
11:33 CIA-18 bioclipse: jonalv * r4089 /trunk/playground/plugins/net.bioclip​se.expression.tests/src/net/bioclipse​/expression/tests/FunctionsTest.java: wrote test for expanding of colon notation
11:38 CIA-18 bioclipse: jonalv * r4090 /trunk/playground/plugins/net.biocli​pse.expression.tests/src/net/bioclip​se/expression/tests/SyntaxTest.java: Removed tests for unwanted functionality considering a few special functions
11:51 olas joined #bioclipse
11:56 CIA-18 bioclipse: jonalv * r4091 /trunk/playground/plugins/net.bioclip​se.expression.tests/src/net/bioclipse​/expression/tests/FunctionsTest.java: wrote test for syntactical check of a point notation for variables
12:18 CIA-18 bioclipse: jonalv * r4092 /trunk/playground/plugins/net.bioclip​se.expression.tests/src/net/bioclipse​/expression/tests/FunctionsTest.java: Wrote tests for what the parser should do with point notation
12:18 CIA-18 bioclipse: ospjuth * r4093 /trunk/playground/plugins/net.bioclipse.biomoby/ (3 files in 2 dirs): Working on tests for biomoby meta.registry cache.
12:23 CIA-18 bioclipse: jonalv * r4094 /trunk/playground/plugins/net.bioclip​se.expression.tests/src/net/bioclipse​/expression/tests/VariablesTest.java: wrote test for adding variables to a created calculator
12:27 egonw joined #bioclipse
12:27 jonalv joined #bioclipse
12:27 ilogger2 joined #bioclipse
12:30 jonalv what just happend? Where did everyone go?
12:32 jonalv ah there you are. What happend?
12:43 olas left #bioclipse
13:29 egonw jonalv: it's called a network split...
13:29 egonw one of the connections in the IRC server network sropped...
13:29 egonw s/s/d/
13:31 jonalv interesting
13:32 * jonalv have never seen it before
13:32 egonw oh, it's quite common
13:33 egonw lately has been a more quite period
13:33 jonalv mhm
14:34 * jonalv is reading about the Spring IoC container. There is much to learn about it...
14:51 edrin joined #bioclipse
14:56 jonalv joined #bioclipse
16:09 ilogger2 joined #bioclipse
16:11 edrin anyone here?
16:12 edrin who is currently taking care of the bijava implementation in bioclipse?
17:45 edrin hm
19:09 edrin left #bioclipse
19:14 egonw joined #bioclipse
20:21 viklund joined #bioclipse
20:21 viklund left #bioclipse

| Channels | #bioclipse index | Today | | Search | Google Search | Plain-Text | summary