Camelia, the Perl 6 bug

IRC log for #bioclipse, 2007-10-31

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All times shown according to UTC.

Time Nick Message
07:25 egonw joined #bioclipse
08:20 masak joined #bioclipse
08:21 olas joined #bioclipse
08:40 CIA-18 bioclipse: ospjuth * r4102 /trunk/playground/plugins/net.bioclips​e.biomoby.ui/src/net/bioclipse/biomoby​/ui/views/MobyViewLabelProvider.java: Removed status added by labelprovider
08:44 CIA-18 bioclipse: ospjuth * r4103 /trunk/playground/plugins/net.bioclipse.bio​moby.ui/src/net/bioclipse/biomoby/ui/prefs/ (BioMobyPrefsInitializer.java RegistryPage.java): Updated the preference page and initializer. Still doesn't run on first startup.
08:44 CIA-18 bioclipse: ospjuth * r4104 /trunk/playground/plugins/net.bioclipse.bio​moby.ui/src/net/bioclipse/biomoby/ui/model/ (3 files): Updated ViewObjects for new child creation process based on cached info
08:45 CIA-18 bioclipse: ospjuth * r4105 /trunk/playground/plugins/net.biocli​pse.biomoby.ui/src/net/bioclipse/bio​moby/ui/model/MobyViewCentral.java: New child creation process based on cached impl
08:45 CIA-18 bioclipse: ospjuth * r4106 /trunk/playground/plugins/net.biocl​ipse.biomoby.ui/src/net/bioclipse/b​iomoby/ui/BioclipseMobyModel.java: Use new cache dir in prefs page
09:07 olas bjarni: around?
09:19 egonw olas: http://chem-bla-ics.blogspot.com/2007/10/o​ffline-cdk-development-using-git-svn.html
09:20 egonw that might interest you
09:24 olas sounds interesting
10:27 EskilA joined #bioclipse
12:33 olas joined #bioclipse
12:36 bjarni olas: around.
12:37 CIA-18 bioclipse: ospjuth * r4107 /trunk/playground/plugins/net.bioclipse.biomoby.ui​/src/net/bioclipse/biomoby/ui/views/MobyView.java: Added search field that filters tree based on service name
12:38 olas bjarni: yes
12:38 olas bjarni: are you at BMC?
12:38 bjarni not yet
12:38 bjarni I'll be in for a while today though
13:13 CIA-18 bioclipse: ospjuth * r4108 /trunk/playground/plugins/net.biocli​pse.biomoby.ui/src/net/bioclipse/bio​moby/ui/model/MobyViewCentral.java: Replaced search bar with patternfFilter. Much nicer filtering now.
13:32 CIA-18 bioclipse: ospjuth * r4109 /trunk/playground/plugins/net.bioclipse.biomoby.ui​/src/net/bioclipse/biomoby/ui/views/MobyView.java: Filtered on whole name, not just from beginning
14:20 rojasm joined #bioclipse
14:21 rojasm hi, somebody experience with jri java r interface?
14:27 olas masak and bjarni are looking at it
14:27 olas bjarni in particular
14:27 rojasm That is what egon said me
14:27 olas to get R into Bioclipse
14:27 rojasm yes
14:28 olas bjarni is working on it, but has just started
14:28 rojasm but may be they are not at the moment
14:28 olas are not?
14:28 olas what do you mean?
14:29 rojasm I mean they are available
14:30 rojasm sorry I mean they are not available now
14:30 olas what is available?
14:30 olas ah bjarni you mean
14:30 olas well, let him answer when he gets back
14:31 rojasm ok :)
14:34 bjarni I'm here
14:34 bjarni how can I help you?
14:34 rojasm hi bjarni
14:34 bjarni hi rojasm
14:34 rojasm I am trying to run the jri from eclipse
14:35 bjarni me too
14:35 rojasm but it doesn't work for me
14:35 bjarni I haven't gotten that far
14:35 bjarni I'm learning eclipse first
14:35 bjarni <- C dude
14:39 rojasm but you tried to make running the example JAva GUI calling R from www.splusbook.com/Rintro/RCourseMaterial.html
14:39 rojasm because for it doesn't work either
14:40 rojasm for me!
14:40 bjarni I only tried the two test programs that came with JRI, which worked from the shell. I have not gotten so far that I have attempted to run anything from inside eclipse.
14:41 rojasm and you know when you made ./configure and after make
14:41 rojasm Can I know if it is good installed
14:42 bjarni the only test I am aware of is the two test programs included in the examples directory
14:42 bjarni the configure script and makefile seem to be a bit iffy
14:42 bjarni they fail for non-obvious reasons in some cases
14:43 bjarni I think they require R 2.6 and Java 1.5
14:43 bjarni R 2.2 does not work, and Java 1.4 or 1.6 does not work either
14:44 bjarni right now I have JRI installed by way of the portage package since I got tired of trying to build it from the original distribution
14:55 edrin joined #bioclipse
15:00 egonw olas: git is really cool
15:00 egonw highly recommended for those of us who work during travel
16:06 * bjarni is having trouble getting the external monitor to work and is putting it off until the weekend
16:45 CIA-18 bioclipse: ospjuth * r4110 /trunk/playground/plugins/net.bioclipse.biomoby/ (10 files in 3 dirs): Updated to new BioMoby 2007-10-31 and added some tests
17:04 rojasm joined #bioclipse
18:09 egonw joined #bioclipse
18:53 edrin hi egonw
18:54 egonw hi edrin
20:32 edrin bjarni: did you start as a Diploma student at the BMC =
20:32 edrin ?
21:17 edrin hhm
21:40 edrin left #bioclipse
21:40 edrin joined #bioclipse

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