Camelia, the Perl 6 bug

IRC log for #bioclipse, 2007-11-26

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All times shown according to UTC.

Time Nick Message
07:27 olas joined #bioclipse
07:28 olas egonw: congrats to the CMLSpect article
07:58 olas egonw: let's discuss biomart at some occasion
08:04 EskilA joined #bioclipse
08:44 steinbeck_ joined #bioclipse
08:44 steinbeck_ moin
08:45 olas moin stenibeck_
09:00 steinbeck__ joined #bioclipse
09:13 steinbeck__ joined #bioclipse
09:13 egonw steinbeck_any: your IP addres is changing all the time
09:13 egonw you got at least three different ones in <30minutes
09:17 steinbeck___ joined #bioclipse
09:18 egonw steinbeck___: that's the fourth I record
09:18 egonw 4th IP, that is
09:30 steinbeck___ my router is suffering from attacks and does not seem to be able to manage it.
09:30 steinbeck___ this is very annoying
09:31 jonalv joined #bioclipse
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09:36 egonw steinbeck___: annoying indeed
09:38 jonalv steinbeck___: is it most '_' win day today? :)
09:39 * egonw_______ joined the competition
09:44 jonalv :)
09:44 masak egonw_______: size doesn't matter
09:45 egonw_______ oh...
09:45 egonw if you say so
09:45 masak :)
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10:44 * olas is on lunch
10:48 EskilA joined #bioclipse
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11:57 CIA-18 bioclipse: ospjuth * r4329 /branches/bioclipse2/chemoinfo​rmatics/net.bioclipse.cdk.ui/ (15 files in 7 dirs):
11:57 CIA-18 bioclipse: Massive cleanup with uncommentings to make plugin compile. Everything is broken,
11:57 CIA-18 bioclipse: nothing fixed. JCPMPE and JCPEditor needs to be rewritten with completely
11:57 CIA-18 bioclipse: updated resource handling. Complete rewrite or restart with 1.1.x version might
11:57 CIA-18 bioclipse: be best alternative.
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13:09 CIA-18 bioclipse: biocoder * r4330 /trunk/plugins/net.bioclipse.chart/src​/net/bioclipse/chart/ChartUtils.java: Reworked all chart methods to work with SWT_AWT, in other words it's funkis.
13:19 CIA-18 bioclipse: biocoder * r4331 /trunk/plugins/net.bioclipse.chart/src​/net/bioclipse/chart/ChartUtils.java: minor fix
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14:43 CIA-18 bioclipse: ospjuth * r4334 /branches/bioclipse2/chemoinf​ormatics/net.bioclipse.jmol/ (3 files in 3 dirs): Upgraded to latest Jmol r8676 and used new methods in Outline to find parent.
14:44 egonw olas: time for a quick demo?
14:49 egonw olas: is the Jmol plugins using svn:externals or a .jar ?
14:53 olas .jar
14:53 olas quick demo of what?
14:53 egonw the jmol plugin outline
14:53 * olas is busy working
14:53 olas not yet
14:53 egonw mmm... can't find the jar in my checkout
14:53 egonw olas: ack, no worries...
14:53 egonw commits just look rather exciting
14:53 olas oh
14:54 olas not really
14:54 egonw http://bioclipse.svn.sourceforge.net/vi​ewvc/bioclipse/branches/bioclipse2/chem​oinformatics/net.bioclipse.jmol/jars/
14:54 egonw no Jmol.jar there
14:54 olas still needs some work
14:54 olas mom
14:54 CIA-18 bioclipse: ospjuth * r4335 /branches/bioclipse2/chemoinf​ormatics/net.bioclipse.jmol/ (jars/Jmol.jar src/net/bioclipse/jmol/editors/JmolEditor.java): Upgraded to latest Jmol r8676 with jar this time.
14:55 olas there
14:56 olas egonw: if you'd like, you can start working on the JCPEditor
14:56 olas needs a lot of attention
14:56 olas and I'm not the man to do it
14:57 egonw olas: i'd love too, but no idea where to start...
14:57 egonw I need a few pointers on how to access the data from the opened resources first...
14:57 egonw you got a good RCP tutorial on that?
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14:59 olas mom tel
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15:03 olas egonw: look at my new JmolEditor
15:05 egonw so, I need to implement two classes: the XEditor, and the XEditorContributor?
15:05 egonw that's all?
15:06 egonw and the XEditorContributor is for menu contributions etc, right?
15:06 edrin you are talking about bc2, right?
15:06 egonw yes
15:07 olas egonw: in principle, yes
15:07 olas if you want, you can do the MPE separately
15:08 olas so a JCPMPE to hold the JCPEditor on one tab and the TextEditor on the second
15:08 egonw why does the JmolContentOutlinePage not use the parent param in createControl() ?
15:08 olas but you can do as JmolEditor, which has it all in the same class
15:08 olas parent what?
15:09 egonw line 171
15:09 egonw in JmolContentOutlinePage.java
15:09 olas it does
15:09 olas line 173
15:09 olas or what do you mean?
15:11 egonw yeah, it is in 173... but why not in the viewer too?
15:11 egonw ah... now I see
15:11 egonw the getTreeViewer is a super. method...
15:11 egonw OK, never mind
15:11 olas nop
15:24 CIA-18 bioclipse: ospjuth * r4336 /branches/bioclipse2/chemoinformati​cs/net.bioclipse.jmol/src/net/biocl​ipse/jmol/editors/JmolEditor.java: It is now possible to select BioPolymers
15:29 CIA-18 bioclipse: ospjuth * r4337 /branches/bioclipse2/chemoinformati​cs/net.bioclipse.jmol/src/net/biocl​ipse/jmol/editors/JmolEditor.java: Updated selections. Model, BioPOlymer, and Monomer should now work fine.
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18:19 edrin n
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