Camelia, the Perl 6 bug

IRC log for #bioclipse, 2007-12-12

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All times shown according to UTC.

Time Nick Message
08:17 egonw joined #bioclipse
08:56 steinbeck joined #bioclipse
09:02 olas joined #bioclipse
09:05 steinbeck Moin Ola
09:05 steinbeck lest me know when you and Jarl are ready for the chat
09:06 olas I am
09:06 olas will call Jarl
09:07 steinbeck Shall I instantiate the skype conference call?
09:07 steinbeck I also told Egon to include him
09:09 olas let me carl Jarl first, but sure
09:10 olas he will go on skype now
09:10 olas please start the call
09:12 olas Jarl had some problems with his computer
09:12 steinbeck :-)
09:12 olas he'll be around in a minite or two
09:12 steinbeck ack
09:12 steinbeck Egon ist still searching his headset :-)
09:13 olas right, then I'll make myself a cup of coffee
09:13 olas start the call when you like
09:16 olas steinbeck: jarl_wikberg
09:16 steinbeck got it
09:17 olas it says "steinbeck not available" when priv msg to you
09:17 olas he is online
09:17 olas we're ready
09:17 steinbeck yes, saw him
09:17 steinbeck willl start now
09:28 EskilA joined #bioclipse
11:52 jonalv joined #bioclipse
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12:27 egonw joined #bioclipse
12:35 olas egonw: around?
12:35 egonw yes
12:35 olas how much will you work on the QSARProject in Bioclipse in the next weeks?
12:36 olas I will otherwise start do it
12:36 egonw not, I'm afraid
12:36 olas I awas afraid so
12:36 egonw stupid deadlines...
12:36 olas ok, just wanted to know
12:36 egonw and stupid stomach flu this weekend
12:37 olas I'm not sure how much work I can put into it but wanted to know anyway
12:37 egonw I printed things... shall we make this a nice open notebook science project?
12:37 olas printed what?
12:37 egonw so that we can both do bits of things?
12:37 olas please explain
12:37 egonw that PDF with Chapter 4 or so...
12:38 egonw oh wait...
12:38 olas what do you mean?
12:38 olas what PDF?
12:38 egonw that was about exporting/ant/auto-testing
12:38 egonw mixing things up
12:38 olas ok
12:38 olas what is an open notebook scienc project?
12:39 egonw where the whole development model is open...
12:40 olas how? where?
12:40 egonw so, we would use our blogs as classical notebook
12:40 olas oh
12:40 olas in fact, we would just blog abot progress, right?
12:40 egonw and progress *not* made
12:41 olas right
12:41 CIA-31 bioclipse: ospjuth * r4462 /branches/bioclipse2/chemoinformatics/ne​t.bioclipse.jmol/src/net/bioclipse/jmol/ (5 files in 3 dirs): Updated properties but selections in Jmol still is buggy.
12:43 olas will try to release 1.2.0 today
12:43 egonw happy to hear that...
12:43 olas did all QSAR work in Rc1?
12:43 olas it looked fine to me
12:44 egonw ok
12:44 olas egonw: can't answer your priv msgs
12:45 olas says you are not available
12:45 olas is that my of your fault?
12:45 olas egonw?
12:46 egonw weird
12:49 olas egonw: no worries
12:49 olas Looking forward to metabolomics in Bioclipse!
12:50 olas left #bioclipse
12:50 olas joined #bioclipse
12:50 olas no, still says you are not available in priv chat, egonw
12:51 egonw very weird...
12:51 olas yes
12:51 egonw well, not the end of the world
12:51 olas not really :-)
12:51 olas I could read :-)
12:52 * olas is preparing the new update site
12:53 * olas is building the new update site
12:55 * olas is testing on mac
12:57 * olas is fixing things
12:57 olas egonw: around?
12:57 olas I cannot find any uses of the Compute wizard
12:57 olas it is empty
12:58 olas in fact, no plugin requires it
12:58 olas Shall it really be in 1.2.0?
12:58 olas egonw?
12:58 olas I want to omit it
12:58 olas for now
12:59 olas as ghemical is not in bc1.2.0
12:59 olas how stable is ghemical?
12:59 olas Can be release a feature with it?
12:59 olas let me know when you get back
12:59 egonw_ joined #bioclipse
12:59 olas repost:
13:04 egonw_ I did not see anything reposted...
13:05 olas I cannot find any uses of the Compute wizard olas
13:05 egonw_ CASE
13:05 egonw_ Ghemical
13:06 olas as ghemical is not in bc1.2.0
13:06 egonw_ but non of these are in the main distrib
13:06 olas case is not in 1.2.0
13:06 egonw_ :)
13:09 olas how stable is ghemical?
13:09 olas near a release?
13:14 egonw no idea
13:18 olas egonw: are you OK with me dropping bc_compute for 1.2.0?
13:18 olas I don't like to have a toolbar itom that is empty
13:18 olas item
13:18 olas we just bundle bc_compute with the CASE feature if need be
13:18 egonw ok
13:20 CIA-31 bioclipse: ospjuth * r4463 /trunk/features/net.bioclipse-feature/feature.xml: Removed bc_compute from bioclipse-feature
13:20 olas egonw: one important task
13:20 egonw go on
13:20 olas could you please test that the mzData editor works in the RC1?
13:20 olas I have no idea how to test that
13:20 egonw no, unfotunately not...
13:20 egonw because neither do I
13:20 egonw that is...
13:20 olas then I will not include it in 1.2.0
13:21 egonw what it does now, is open a file, and show a tree of elements
13:21 egonw that is, AFAIK, the functionality
13:21 egonw and that works
13:21 olas does that work in 1.2.0 RC1?
13:21 egonw yes, tested that friday on that windows machine
13:21 olas I don't even have a test-file
13:21 egonw in bc_data
13:21 egonw ummm
13:21 egonw net.bioclipse.data
13:21 olas could you put a test file in sampleData?
13:21 egonw spectra...
13:22 olas ok..
13:22 egonw spectra/
13:22 olas what file?
13:22 egonw test.something
13:22 egonw mom
13:22 olas testCASE.cml?
13:23 olas please remove all non-working files from testdata
13:23 olas and what is NIST?
13:23 egonw no, test data is for testing...
13:23 olas yea
13:24 olas but this is sampleData
13:24 olas and sampleData should really work
13:24 egonw testCASE.cml?
13:24 egonw mm...
13:24 egonw it's not in the test data plugin?
13:24 olas testCASE.cml is there
13:24 olas what is that?
13:25 egonw where?
13:25 egonw http://bioclipse.svn.sourceforge.ne​t/viewvc/bioclipse/trunk/plugins/ne​t.bioclipse.data/data/sampleData/
13:25 egonw don'ts see it...
13:25 egonw ah...
13:25 egonw in spectra too...
13:25 olas in spectra
13:25 egonw that one is fine...
13:25 egonw it's not CASE...
13:25 egonw well... it's the input for a CASE
13:25 olas what can I test with the mxData editor?
13:25 egonw but a pure 100% spectrum
13:25 olas ok
13:26 egonw tt4.mzdata
13:26 olas ok
13:26 olas will test that then
13:26 egonw feel free to rename testCASE.cml
13:26 olas to what?
13:26 egonw no idea
13:26 olas ok
13:26 olas thx
13:28 * olas is building bioclipse 1.2.0 RC2
13:38 olas /renamed GriDEditor to Matrix Editor
13:39 CIA-31 bioclipse: ospjuth * r4464 /trunk/plugins/net.bioclip​se.statistics/plugin.xml: Renamed "Grid Editor" to "Matrix Editor"
13:49 olas egonw: mzData editor does not work for me
13:49 olas I get an error
13:49 olas The string resource '_UI_LocateValue_action' could not be located
13:49 olas egonw: need help
13:50 egonw umm... let me think...
13:50 egonw steffen neumann has updated the code...
13:50 egonw ok, can it be removed?
13:50 olas can you fix this now?
13:50 olas what?
13:50 olas the editor?
13:50 egonw yes?
13:50 olas sure
13:51 olas I can remove the entire mzData editor
13:51 egonw can't fix it right now...
13:51 olas from the spectrum feature
13:51 olas ok
13:51 olas will remove it then
13:51 egonw please do
13:51 egonw will talk with Steffen and Stefan to get an Bioclipse 1.2 update site for it in Halle
13:51 olas ok
13:52 CIA-31 bioclipse: ospjuth * r4465 /trunk/features/net.bioclipse.​spectrum-feature/feature.xml: Removed mzData from spectrum feature
13:53 CIA-31 bioclipse: ospjuth * r4466 /trunk/features/ (8 files in 8 dirs): Set dependencies only on features
13:56 egonw olas: FYI... the 3.3 compatible code is available from SVN at metware.svn.sourceforge.net
13:56 egonw but I have no idea at this moment, what Stefan did to integrated it into BC
13:57 olas ok
13:57 olas I guess we will only support it in Bioclipse2 then
13:57 olas which is OK for me
13:58 egonw yeah, would make sense or so...
13:58 olas so much easier to use if we are more like eclipse
13:58 olas if it works in eclipse, it should work in bioclipse
13:58 egonw right
13:59 egonw looking forward to that
13:59 egonw very much :)
13:59 olas me too
13:59 olas very VERY much
14:00 * olas is uploading new updatesite/dev
14:01 egonw going to upload RC2 to SF?
14:01 olas no
14:01 olas that is too slow
14:01 olas will upload to temp dir in bioclipse.net
14:01 olas and if it works, to SF tomorrow
14:01 olas at least that is the plan
14:03 egonw ok
14:22 egonw bbl
14:32 masak joined #bioclipse
14:46 CIA-31 bioclipse: carl_masak * r4467 /branches/bioclipse2/core/plugins/n​et.bioclipse.ui/src/net/bioclipse/u​i/views/ScriptingConsoleView.java:
14:46 CIA-31 bioclipse: [ScriptingConsoleView.java]
14:46 CIA-31 bioclipse: * implemented printMessage
14:57 egonw joined #bioclipse
15:14 EskilA olas: Jag kunde inte hitta chart plug-inet p� update sidan
15:25 olas this is an english site
15:26 olas and chart is not a feature, it'äs a plugin
15:26 olas hence you can't install it separately
15:27 olas left #bioclipse
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