Camelia, the Perl 6 bug

IRC log for #bioclipse, 2008-01-02

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All times shown according to UTC.

Time Nick Message
07:42 olas joined #bioclipse
09:03 jonalv joined #bioclipse
09:08 olas hej jonalv
09:08 olas oops
09:08 olas wrong lang
09:09 jonalv hi olas
09:11 olas hi jonalv
09:34 egonw joined #bioclipse
09:42 _thomas_k joined #bioclipse
11:08 CIA-20 bioclipse: ospjuth * r4592 /branches/bioclipse2/test/:
11:09 CIA-20 bioclipse: ospjuth * r4593 /branches/bioclipse2/test/olaRepo1/: Initial import.
11:10 CIA-20 bioclipse: ospjuth * r4594 /branches/bioclipse2/test/olaRepo1/qsar.xml: added file
11:11 CIA-20 bioclipse: ospjuth * r4595 /branches/bioclipse2/test/olaRepo1/ (11 files): Added more files
11:14 * jonalv @lunch
12:17 olas cool, just got SVN to work inside bioclipse2 :-)
12:17 olas Needed some fixes in subclipse but was pretty straight-forward
12:17 olas blog to come soon
12:20 jonalv wow
12:33 egonw very cool!
13:16 olas http://bioclipse.blogspot.com/2008​/01/subversion-in-bioclipse2.html
13:17 jonalv is there a note somewhere on how the logging is supposed to be done in biclipse2? (log3j or such)
13:20 olas haha
13:20 olas hmm
13:20 jonalv ?
13:20 olas will post on wiki if not exists
13:20 olas mom
13:20 jonalv k
13:21 olas http://wiki.bioclipse.net/index.php​?title=Creating_a_Bioclipse2_plugin
13:21 olas is that OK?
13:22 jonalv ah yes I think so
13:22 jonalv so I should pu a logger.properties somewhere?
13:22 olas yes, in root of plugin
13:23 olas copy one from another plugin
13:23 jonalv what happends if I don't?
13:23 olas and please make note on wiki pahe about that
13:23 olas you don't wanna know...
13:23 olas bad things
13:23 jonalv =)
13:23 * jonalv is testing...
13:25 jonalv aouch you have a special BioclipseActivator?
13:25 jonalv That won't work for me
13:31 jonalv I will use System.out.println for a while longer because I can't do that. My Activator is not a plugin Activator only a BundleActivator...
13:33 olas ok
14:07 egonw olas: cool screenshot
14:08 CIA-20 bioclipse: jonalv * r4596 /branches/bioclipse2/ (7 files in 5 dirs): Attempts at getting recording of API calls to work. It is not yet working...
14:39 CIA-20 bioclipse: ospjuth * r4597 /branches/bioclipse2/chemoinf​ormatics/net.bioclipse.qsar/ (24 files in 7 dirs): Added NewQSARProjectWizard that creates folders 'molecules', 'descriptors', and file qsar.xml from template.
14:42 CIA-20 bioclipse: ospjuth * r4598 /branches/bioclipse2/chemoinf​ormatics/net.bioclipse.qsar/ (3 files in 2 dirs): Renamed file
14:46 CIA-20 bioclipse: ospjuth * r4599 /branches/bioclipse2/chemoinformatics/​net.bioclipse.qsar/src/net/bioclipse/q​sar/wizards/NewQSARProjectWizard.java: Name on subtasks
14:51 CIA-20 bioclipse: ospjuth * r4600 /branches/bioclipse2/misc/net.bioclipse.pkpd/: Initial import.
14:53 CIA-20 bioclipse: ospjuth * r4601 /branches/bioclipse2/misc/net.bioclipse.pkpd/ (27 files in 11 dirs): Stub for a PK/PD plugin with a non-implemented builder for pkpd.xml.
14:57 CIA-20 bioclipse: ospjuth * r4602 /branches/bioclipse2/misc/net.bioclips​e.pkpd/src/net/bioclipse/pkpd/builder/ (PKPDBuilder.java PKPDNature.java): lowercase in ids
15:21 CIA-20 bioclipse: jonalv * r4603 /branches/bioclipse2/ (3 files in 3 dirs): More attempts at getting recodring to work. It fails silently now. (The worst kind...)
15:49 CIA-20 bioclipse: ospjuth * r4604 /branches/bioclipse2/misc/net.bioclipse.pkpd/ (plugin.xml src/net/bioclipse/pkpd/editors/PKPDEditor.java): Cleanup of editor
15:51 CIA-20 bioclipse: ospjuth * r4605 /branches/bioclipse2/misc/net.bioclipse.pkpd/s​rc/net/bioclipse/pkpd/editors/PKPDEditor.java: Some cleanup in doc
16:14 olas see: http://www.biojava.org/wiki/BioJava3_Proposal
16:15 olas could be worthwhile to follow
16:16 CIA-20 bioclipse: jonalv * r4606 /branches/bioclipse2/bioinformatics/plugi​ns/net.bioclipse.biojava.business.tests/ (6 files in 3 dirs): Wrote a test for loading of fasta sequence
16:23 CIA-20 bioclipse: jonalv * r4607 /branches/bioclipse2/bioinformatic​s/plugins/net.bioclipse.biojava.bu​siness/src/net/bioclipse/biojava/ (4 files in 2 dirs): renamed file
16:27 CIA-20 bioclipse: jonalv * r4608 /branches/bioclipse2/core/plugins/net.b​ioclipse.recording.tests/src/net/biocli​pse/recording/tests/RecordingTest.java: Test code currently not working but which might work with RC2 of Spring-dm project
16:33 CIA-20 bioclipse: jonalv * r4609 /branches/bioclipse2/core/plug​ins/net.bioclipse.recording/: clearing up some strange naming
16:33 CIA-20 bioclipse: jonalv * r4610 /branches/bioclipse2/core/plugins/ (net.bioclipse.record/ net.bioclipse.recording/): clearing up some strange naming
16:49 jonalv olas,  will you turn up in Uppsala tomorrow?
17:03 olas not really
17:03 olas need to write a lot
17:03 jonalv oki
17:03 olas anything important we need to discuss?
17:04 jonalv no I don't think so, I was just wondering...
17:04 olas ok
17:06 jonalv I am stuck with Spring again... :(
17:06 jonalv so it might be winter for a little while longer... ;)
17:12 olas jonalv: no news from masak?
17:12 jonalv no I don't know where he is
17:25 CIA-20 bioclipse: jonalv * r4611 /branches/bioclipse2/ (14 files in 6 dirs): Added copyright text to my classes
17:28 jonalv kaskelot++ //for pseudo tty's
17:28 kaskelot \o/
19:17 olas left #bioclipse
19:47 edrin joined #bioclipse
20:13 egonw joined #bioclipse
20:29 edrin hey egonw
20:29 egonw hi edrin
20:30 edrin to what email should i send the stuff?
22:01 edrin joined #bioclipse
22:30 CIA-20 bioclipse: edrin_t * r4612 /trunk/xws-client/src/net/bioclipse/xws/client/ (4 files in 4 dirs): some minor bugfixes (especially of invokeSync!)

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