Camelia, the Perl 6 bug

IRC log for #bioclipse, 2008-01-17

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All times shown according to UTC.

Time Nick Message
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10:53 jonalv CIA-20, out on secret missions again? :)
11:04 jonalv subclipse is so borken
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16:53 edrin joined #bioclipse
16:53 edrin hi
16:53 olas hi edrin
16:53 edrin hi olas
16:54 masak hi edrin
16:54 jonalv hi edrin
16:55 jonalv this works now:
16:55 jonalv js> o = biojava.createSequence(">asdf \n ACTGTCA");
16:55 jonalv js> o.getPlainSequence();
16:55 jonalv <jonalv> actgtca
16:56 masak how does createSequence know which format it's getting
16:56 masak ?
16:56 jonalv it's getting fasta
16:57 jonalv otherwise _I guess it dies but I don't know...
16:57 masak ah
17:00 jonalv I HATE SUBCLISPE
17:02 olas masak: you can give createSequence any format that BioJava can read
17:03 masak olas: yes, but how does it know which one it is?
17:03 olas it has a guesser/matcher
17:03 masak cool!
17:03 masak magic, even
17:05 olas :-)
17:05 olas have to go now
17:05 olas tomorrow I'll be in Uppsala
17:05 olas bye
17:05 masak c u
17:05 olas left #bioclipse
17:27 CIA-20 joined #bioclipse
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22:32 CIA-20 bioclipse: ospjuth * r4707 /branches/bioclipse2/core/​plugins/net.bioclipse.ui/ (bioclipse.product src/net/bioclipse/ui/Activator.java): Updated product and Activator for ui plugins.
22:32 CIA-20 bioclipse: ospjuth * r4708 /branches/bioclipse2/chemoinformatics/net.biocli​pse.qsar/src/net/bioclipse/qsar/Activator.java: Activator needs its own getDefault()
23:19 CIA-20 bioclipse: ospjuth * r4709 /branches/bioclipse2/bioinformati​cs/plugins/net.bioclipse.biojava/ (.classpath META-INF/MANIFEST.MF jars/biojava.jar): Temoved old jar and updated exported pkgs
23:20 CIA-20 bioclipse: ospjuth * r4710 /branches/bioclipse2/core/plugins/ne​t.bioclipse.core/src/net/bioclipse/c​ore/domain/ISequenceCollection.java: Added interface for multiple sequences
23:24 CIA-20 bioclipse: ospjuth * r4711 /branches/bioclipse2/bioinformatic​s/plugins/net.bioclipse.biojava.bu​siness/src/net/bioclipse/biojava/ (4 files in 2 dirs): Added BiojavaSequenceCollection for containing multiple sequences
23:26 CIA-20 bioclipse: ospjuth * r4712 /branches/bioclipse2/bioinformatics/plugins/​net.bioclipse.biojava.business.tests/tests/ (4 files in 2 dirs): Added test for containing multiple sequences

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