Camelia, the Perl 6 bug

IRC log for #bioclipse, 2008-01-29

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All times shown according to UTC.

Time Nick Message
05:34 masak joined #bioclipse
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07:34 Annzi joined #bioclipse
08:17 olas joined #bioclipse
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08:48 CIA-21 bioclipse: j_viklund * r4826 /trunk/playground/plugins/net.bioclipse.paml/ (44 files in 20 dirs): Added plugin net.bioclipse.paml
08:59 egonw PAML?
08:59 viklund Yes
09:00 egonw what is that?
09:00 viklund it's a maximum likelihood package for evolutionary studies
09:00 viklund we use it here, especially the Yn00 and CodonML programs
09:00 viklund for calculating dN and dS
09:01 viklund sometimes also called Ka and Ks
09:01 viklund it's short for "Phylogenetic Analysis by Maximum Likelihood"
09:01 egonw ah...
09:02 egonw at some point, I wrote some tools for visualization of phylogenetic trees in MatLab
09:02 viklund ;)
09:03 viklund tree visualization is actually a problem, there are lots of software that do it wrong
09:03 viklund when rerooting trees bootstrap values end up on the wrong branch and such
09:04 viklund ahh, well, afk: Coffee
09:06 CIA-21 bioclipse: jonalv * r4827 /branches/bioclipse2/ (8 files in 6 dirs): renamed net.bioclipse.core.buisness-​>net.bioclipse.core.business
09:07 egonw buisness :)
09:07 jonalv yes...
09:11 jonalv I am still awaiting a good suggestion of what to call it instead. People seem to want another name...
09:12 egonw rename what?
09:13 jonalv business
09:13 egonw what about .osgi ?
09:13 jonalv uhm that's not what it is...
09:15 * jonalv off to together with olas fix something with Bioclipse 2 plugin structure. Commits will (hopefully) come asap
09:16 olas business is really teh business layer
09:17 egonw http://www.youtube.com/watch?v=ClCmO42_tQ0
09:17 olas so it is an appropriate name
09:17 * egonw has no objections against other peoples business
09:17 egonw nice movie btw
09:17 egonw "Fuck Planet Earth"
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11:14 * jonalv @ lunch
11:41 CIA-21 bioclipse: ospjuth * r4828 /branches/bioclipse2/core/plu​gins/net.bioclipse.scripting/ (3 files in 3 dirs): Removed namespace EP.
11:42 CIA-21 bioclipse: ospjuth * r4829 /branches/bioclipse2/core/​plugins/net.bioclipse.ui/ (bioclipse.product plugin.xml): Update product and removed namespace extension.
11:47 olas EskilA: Är du där?
11:47 * olas antar EskilA är på lunch
12:08 rojasm joined #bioclipse
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12:35 EskilA olas: Jag ät tillbaka nu
12:36 olas EskilA: har du visat Annzi jigloo?
12:37 EskilA ja
12:38 EskilA kan du, jag och mek träffas idag?
12:38 olas ja
12:39 olas efter mötet kl 14 med viklund
12:39 olas då träffas vi
12:39 olas ok?
12:40 masak joined #bioclipse
12:45 EskilA olas: ok
13:23 egonw yes...
13:23 egonw we got autherntication working for MetWare
13:24 egonw using LDAP
13:24 egonw important milestone
14:47 masak joined #bioclipse
15:33 CIA-21 bioclipse: ospjuth * r4830 /branches/bioclipse2/core/p​lugins/net.bioclipse.core/ (3 files in 3 dirs): Removed logging from core. Use net.bioclipse.logging instead.
15:34 CIA-21 bioclipse: ospjuth * r4831 /branches/bioclipse2/core/plugins/ne​t.bioclipse.ui/META-INF/MANIFEST.MF: Import net.bioclipse.logging.
16:19 rojasm left #bioclipse
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17:54 CIA-21 bioclipse: Annzi * r4832 /branches/bioclipse2/chemoinf​ormatics/net.bioclipse.moss/ (5 files in 2 dirs): Sample wizards has been created are not functional at the moment
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