Camelia, the Perl 6 bug

IRC log for #bioclipse, 2008-03-27

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All times shown according to UTC.

Time Nick Message
04:12 CIA-22 bioclipse: rklancer * r5207 /bioclipse2/trunk/plugins/net.bioclipse.logger/: Initial import. net.bioclipse.logging is dead, long live net.bioclipse.logger!
04:21 CIA-22 bioclipse: rklancer * r5208 /bioclipse2/trunk/plugins/net.bioclipse.logger/ (19 files in 8 dirs): After a little fight with Subclipse, I have more files for you.
04:30 CIA-22 bioclipse: rklancer * r5209 /bioclipse2/trunk/ (3 files in 3 dirs):
04:30 CIA-22 bioclipse: Updated target platform and bioclipse.product to reflect net.bioclipse.logger;
04:30 CIA-22 bioclipse: updated command line args in bioclipse.product to a) enable assertions and b)
04:30 CIA-22 bioclipse: set default workspace location to ~/Library/Application Support/Bioclipse
04:30 CIA-22 bioclipse: Workspace/ for OS X users
04:32 CIA-22 bioclipse: rklancer * r5210 /bioclipse2/trunk/plugins/net.bioclipse​.biojava.ui.test/META-INF/MANIFEST.MF: cleanup: removed extraneous log4j imports (especially important b/c the new net.bioclipse.logger only exports org.apache.log4j at the moment, and none of the other log4j packages)
04:44 CIA-22 bioclipse: rklancer * r5211 /bioclipse2/trunk/plugins/net.b​ioclipse.ui/bioclipse.product: Oops fix to little problem with default workspace location on OS X - now goes to ~/Library/Application Support/Bioclipse/Default Workspace/ - not ~/Library/Application%20Support/​Bioclipse/Default%20Workspace...
06:08 CIA-22 bioclipse: rklancer * r5212 /bioclipse2/trunk/plugins/net.bioclipse.logg​er/src/net/bioclipse/logger/Activator.java: fixed unnecessarily complicated usage pattern of enum
06:43 CIA-22 bioclipse: rklancer * r5213 /bioclipse2/trunk/plugins/net.bioclipse.logg​er/src/net/bioclipse/logger/Activator.java: can't leave well enough alone ... found a prettier idiom for the enum
06:56 CIA-22 bioclipse: rklancer * r5214 /bioclipse2/trunk/plugins/net.bioclipse.logg​er/src/net/bioclipse/logger/Activator.java: This idiom actually works...
07:47 Annzi joined #bioclipse
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08:09 rojasm joined #bioclipse
08:24 olas joined #bioclipse
08:46 egonw joined #bioclipse
08:49 jonalv joined #bioclipse
09:12 jonalv okey, I got cycles in my build path after updating now
09:12 jonalv anyone else having similar problems?
09:45 olas will update now and check
09:47 masak joined #bioclipse
10:00 CIA-22 bioclipse: carl_masak * r5215 /bioclipse2/trunk/plugins/net.bioclipse.ui/src/n​et/bioclipse/ui/views/ScriptingConsoleView.java:
10:00 CIA-22 bioclipse: [ScriptingConsoleView.java]
10:00 CIA-22 bioclipse: * whitespace
10:09 CIA-22 bioclipse: ospjuth * r5216 /bioclipse2/trunk/plugins/net.bi​oclipse.ui/META-INF/MANIFEST.MF: Added net.bioclispe.logger as dep in net.bioclipse.ui. Don't know if this is correct but it resolves cyclic dependencies after the latest commit by rklancer regarding net.bioclipse.logger.
10:31 CIA-22 bioclipse: jonalv * r5217 /bioclipse2/trunk/plugins/net​.bioclipse.usermanager.tests/ (2 files in 2 dirs): fixed borken test
10:32 steinbeck joined #bioclipse
10:33 CIA-22 bioclipse: jonalv * r5218 /bioclipse2/trunk/plugins/net.​bioclipse.usermanager.tests/: added (by tests) generated data files to svn:ignore
11:17 edrin joined #bioclipse
11:20 edrin hi ola, hi egon
12:14 masak joined #bioclipse
12:14 jonalv hi edri
12:14 masak hi jonal
12:21 jonalv hi masa
12:22 edrin olas: , egon available?
12:25 egonw no
12:25 egonw got a meeting in 5 minutes...
12:25 egonw check around 16-17 or so
12:27 olas edrin: hi, I'm here
12:28 edrin just writing an email :)
12:28 olas ok
12:29 * olas is building new biomoby with maven, eclipse, m2eclipse, and buckminster
12:29 olas seems quite nice
12:29 olas don't understand half but is looks promising so far
12:44 CIA-22 bioclipse: jonalv * r5219 /bioclipse2/trunk/plugins/ (4 files in 4 dirs): test for situation where asking for info about loggedin user woithout being logged in
12:52 CIA-22 bioclipse: carl_masak * r5220 /bioclipse2/trunk/plugins/net.bioclipse.ui/src/n​et/bioclipse/ui/views/ScriptingConsoleView.java:
12:52 CIA-22 bioclipse: [ScriptingConsoleView.java]
12:52 CIA-22 bioclipse: * converted all /* */ comments to Javadoc comments
12:52 CIA-22 bioclipse: * added further and more detailed comments everywhere
12:52 CIA-22 bioclipse: * reordered methods -- abstract ones last
12:52 masak I will now proceed to address today's problem. stand by.
12:54 edrin olas, egonw, mail sent
13:09 olas edrin: read your mail
13:09 olas let me know if I can assist, but I'd prefer egonw writing that email
13:12 edrin yeah :)
13:19 rklancer joined #bioclipse
13:20 rklancer good morning all (well, here it is, anyway :)
13:20 rklancer olas ... only have a few minutes, but I saw your commit message regarding build cycles?
13:24 olas yes
13:24 olas any comment on that?
13:24 olas rklancer?
13:28 CIA-22 bioclipse: carl_masak * r5221 /bioclipse2/trunk/plugins/net.bioclipse.ui/src/n​et/bioclipse/ui/views/ScriptingConsoleView.java:
13:28 CIA-22 bioclipse: [ScriptingConsoleView.java]
13:28 CIA-22 bioclipse: * new line breaking solution
13:32 rklancer olas, sorry, making coffee
13:32 rklancer anyway.
13:33 rklancer I didn't see any build cycles - and I guess that you did? - so that may mean I made a change I didn't understand
13:35 rklancer do you know what caused the build cycle, or do you remember what the error message was?
13:37 * rklancer be non-interactive again for a few minutes
13:40 CIA-22 bioclipse: carl_masak * r5222 /bioclipse2/trunk/plugins/net.bioclipse.ui/src/n​et/bioclipse/ui/views/ScriptingConsoleView.java:
13:40 CIA-22 bioclipse: [ScriptingConsoleView.java]
13:40 CIA-22 bioclipse: * minor tweaks of whitespace handling
13:47 masak I think it's pretty strange that scripting is not in core, but recording is
13:48 olas hmm, true
13:49 * jonalv puts fingers in ears and goes "lalalalala"
13:49 masak jonalv: wha'? you no like bloated core?
13:49 rojasm joined #bioclipse
13:49 jonalv You do whatever you want to do, there
13:50 masak so, can I move scripting into net.bc.core? :)
13:50 jonalv I couldn't care less. If you can get it to work
13:50 olas was there a problem with that?
13:50 masak I don't think so
13:50 jonalv I honestly can't remember
13:50 olas I'd like to have it in core as well
13:51 masak I'll give it a try
13:51 olas sure
13:51 jonalv but please do that annotation stuff first would you?
13:51 masak if Eclipse crashes or something, I'll give up the idea
13:51 masak jonalv: oh, ok :/
13:51 masak (damn)
13:52 CIA-22 bioclipse: carl_masak * r5223 /bioclipse2/trunk/plugins/net.bioclipse.ui/src/n​et/bioclipse/ui/views/ScriptingConsoleView.java:
13:52 CIA-22 bioclipse: [ScriptingConsoleView.java]
13:52 CIA-22 bioclipse: * a bit more Javadoc
13:52 CIA-22 bioclipse: Annzi * r5224 /bioclipse2/trunk/plugins/net.bioc​lipse.moss/src/net/bioclipse/moss/ (5 files in 3 dirs): Changes in file and path settings
13:57 CIA-22 bioclipse: carl_masak * r5225 /bioclipse2/trunk/plugins/net.bioclipse.core/sr​c/net/bioclipse/recording/RecordingAdvice.java:
13:57 CIA-22 bioclipse: [RecordingAdvice.java]
13:57 CIA-22 bioclipse: * inlined local variable
13:58 rklancer olas, adding net.bioclipse.logger to manifest made a difference?
13:59 olas yes
13:59 olas dunno why
13:59 olas in net.bc.ui
13:59 olas it compålained about cyclic deps
13:59 olas couldn't understand why
13:59 rklancer yeah me either :)
13:59 rklancer when you exported ?
14:05 olas not tried export
14:05 rklancer huh... anyway, hope it's working for you now? I can't seem to reproduce the problem
14:06 * rklancer doesn't like it when he breaks something and can't figure out why
14:07 rklancer anyway, happier news, masak, did you notice I moved the log to ~/Library/Logs/Bioclipse in OS X?
14:07 rklancer so I removed one codinghorror .. .thanks for pointing me to that the other day!
14:12 masak rklancer: np
14:12 masak and thanks
14:15 CIA-22 bioclipse: jonalv * r5226 /bioclipse2/trunk/plugins/​net.bioclipse.usermanager/ (5 files in 5 dirs): Fixed bug wigh login problem for editing account info. The UserManager in bioclipse 2 is mature enough for some heavy testing. No (currently) known bugs remains.
14:17 masak some Java gury is welcome to help me with this problem: http://paste2.org/p/17697
14:18 masak so the problem is that the if condition is never true, even though I know of cases when it should be
14:20 masak s/gury/guru/
14:23 * rklancer would like to look, but has to leave
14:23 masak :/
14:32 masak hang on, it seems to have a "solution"
14:32 masak or at least an explanation
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14:51 CIA-22 bioclipse: ospjuth * r5227 /bioclipse2/trunk/plugins/net.bioclipse.biomoby/ (8 files in 3 dirs): Updated to Biomoby1.0.
14:52 CIA-22 bioclipse: ospjuth * r5228 /bioclipse2/trunk/plugins/ (5 files in 3 dirs): Updates for moby1.0.
14:53 CIA-22 bioclipse: ospjuth * r5229 /bioclipse2/trunk/plugins/net.bioclipse.bio​moby.tests/src/net/bioclipse/biomoby/tests/ (22 files in 2 dirs): Refactored old tests to dedicated package, will be updated to Junit4.
15:11 CIA-22 bioclipse: carl_masak * r5230 /bioclipse2/trunk/plugins/net.bioclipse.ui/sr​c/net/bioclipse/ui/views/JsConsoleView.java:
15:11 CIA-22 bioclipse: [JsConsoleView.java]
15:11 CIA-22 bioclipse: * filtered tab completed manager methods to only those recorded
15:11 CIA-22 bioclipse: * jonalv++ for moral/l/l/technical support in times of hardship
15:13 masak sorry for the duplicated l/'s
15:14 masak my font eats them so I can't see them
15:14 * masak disappears
15:32 edrin egon, got my mail?
15:37 Annzi left #bioclipse
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16:18 CIA-22 bioclipse: ospjuth * r5231 /bioclipse2/trunk/plugins/net.bioclipse.services/ (6 files in 4 dirs): Started working on databaseType and impl, and demonstrated menu contributed as objectContribution.
16:32 CIA-22 bioclipse: jonalv * r5232 /bioclipse2/trunk/plugins/n​et.bioclipse.structuredb/: Initial movement of net.bioclipse.structuredb to bc2
16:34 CIA-22 bioclipse: jonalv * r5233 /bioclipse2/trunk/plugins/net.bioclipse.biojava.​business.tests/net.bioclipse.structuredb.tests/: Initial copying of net.bioclipse.structuredb.tests into bc2
16:57 Annzi left #bioclipse
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17:05 CIA-22 bioclipse: jonalv * r5234 /bioclipse2/trunk/plugins/net.​bioclipse.structuredb.tests/: Initial copying of net.bioclipse.structuredb.tests into bc2
17:08 CIA-22 bioclipse: jonalv * r5235 /bioclipse2/trunk/plugins/net.bioclipse.biojava.​business.tests/net.bioclipse.structuredb.tests/: reverted borken commit
17:12 CIA-22 bioclipse: jonalv * r5236 /bioclipse2/trunk/plugins/net.bioclipse.hsqldb/: Introduced net.bioclipse.hsqldb into bc2
18:41 edrin left #bioclipse
19:32 CIA-22 bioclipse: Annzi * r5237 /bioclipse2/trunk/plugins/net.bioclipse.moss/doc/ (mossUsage.html readFiles.html): Added more help contents.
20:18 egonw joined #bioclipse
20:36 CIA-22 bioclipse: rklancer * r5238 /bioclipse2/trunk/ (22 files in 22 dirs): cleanup: added entries to build.properties files so that more projects actually work when launched as part of exported binary distribution of Bioclipse (vs. only working when Bioclipse is launched from within Eclipse)
20:42 CIA-22 bioclipse: rklancer * r5239 /bioclipse2/trunk/ (10 files in 10 dirs): Cleanup - deleted obsolete logger.properties files from the root of several projects
21:12 CIA-22 bioclipse: rklancer * r5240 /bioclipse2/trunk/plugins/net.bioclipse.logg​er/src/net/bioclipse/logger/Activator.java: little fixups to style, made BcPath enum public (exposes USERHOME, WORKSPACE, INSTALL_AREA, and DEFAULT_LOG_DIR system property key-and-value pairs)

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