Camelia, the Perl 6 bug

IRC log for #bioclipse, 2008-04-14

| Channels | #bioclipse index | Today | | Search | Google Search | Plain-Text | summary

All times shown according to UTC.

Time Nick Message
07:06 olas joined #bioclipse
07:50 jonalv joined #bioclipse
07:51 malick joined #bioclipse
07:59 edrin joined #bioclipse
08:01 edrin hi
08:01 edrin hi olas
08:03 CIA-43 bioclipse: ospjuth * r5409 /bioclipse2/trunk/plugins/net.bioclipse.services/s​rc/net/bioclipse/services/views/ServiceView.java: Log out on exceptions from service execution.
08:03 olas hi edrin
08:23 egonw joined #bioclipse
08:26 de_maas joined #BIOCLIPSE
08:34 edrin hi egonw
08:39 egonw hi edrin
08:39 edrin egonw, olas, I just sent you an email
08:40 EskilA joined #bioclipse
08:58 jvhaarst joined #bioclipse
10:32 EskilA_ joined #bioclipse
10:38 steinbeck joined #bioclipse
10:42 EskilA__ joined #bioclipse
11:42 CIA-43 bioclipse: Annzi * r5410 /bioclipse2/trunk/plugins/net.bioc​lipse.moss/src/net/bioclipse/moss/ (InputMolecule.java wizards/InputPage.java): Changing order of the table creation in InputPage
12:19 edrin joined #bioclipse
13:52 malick joined #bioclipse
14:02 CIA-43 bioclipse: ospjuth * r5411 /bioclipse2/trunk/plugins/net.bioc​lipse.services/src/net/bioclipse/s​ervices/business/ServiceJob.java: Added a ServiceJob to handle execution of services.
14:03 CIA-43 bioclipse: ospjuth * r5412 /bioclipse2/trunk/plugins/net.bioclip​se.services/src/net/bioclipse/service​s/views/ServiceViewDropAdapter.java: Updated drop adapter to use manger for service invocations.
14:05 CIA-43 bioclipse: ospjuth * r5413 /bioclipse2/trunk/plugins/net.bioclipse.services/ (7 files in 4 dirs):
14:05 CIA-43 bioclipse: Updated to get Runner to be invoked and get name from extensiopn point. Updated
14:05 CIA-43 bioclipse: ServiceManager to instantiate ServiceJobs, that instantiates the Runner and
14:05 CIA-43 bioclipse: delegates execution to implementing classes. ServiceJobs can now be modal or run
14:05 CIA-43 bioclipse: in background. Drag and drop of ISequence demonstrated to work.
14:08 rojasm joined #bioclipse
14:10 CIA-43 bioclipse: ospjuth * r5414 /bioclipse2/trunk/plugins/net.bioclipse.biomoby/ (13 files in 3 dirs):
14:10 CIA-43 bioclipse: * Updated MobyManager to use new Service calls.
14:10 CIA-43 bioclipse: * Implemented a generic IMobyRunnable
14:10 CIA-43 bioclipse: * Implemented a generic RunFastaService that accepts an ISequence
14:10 CIA-43 bioclipse: * Created a MobyConverter to decode results from Moby services
14:23 masak joined #bioclipse
14:23 jonalv hi masak!
14:23 masak well, hello there jonalv!
14:23 jonalv (masak sits 2.3 m away from jonalv...)
14:25 masak it's 2008, and talking through air grows ever more out of fashion...
14:56 CIA-43 bioclipse: ospjuth * r5415 /bioclipse2/trunk/plugins/net.bioclip​se.services/src/net/bioclipse/service​s/views/ServiceViewDropAdapter.java: Refactored drop adapter to be able to run junit tests on it
15:02 CIA-43 bioclipse: jonalv * r5416 /bioclipse2/trunk/plugins/net.biocl​ipse.services/src/net/bioclipse/ser​vices/views/model/ServiceType.java: fixed use of generics causing compile error on my machine
15:07 CIA-43 bioclipse: Annzi * r5417 /bioclipse2/trunk/plugins/net.bioc​lipse.moss/src/net/bioclipse/moss/ (3 files in 2 dirs): Changed class name from MossTestRunner to MossRunner
15:21 olas Annzi++
15:21 olas Nice to see your commits
15:21 olas please update wiki accordingly
15:30 masak` joined #bioclipse
15:41 egonw joined #bioclipse
15:43 CIA-43 bioclipse: ospjuth * r5418 /bioclipse2/trunk/plugins/net.bioclip​se.services/src/net/bioclipse/service​s/views/ServiceViewDropAdapter.java: More types of drops accepted
16:00 CIA-43 bioclipse: ospjuth * r5419 /bioclipse2/trunk/plugins/net.bioclipse.ser​vices/src/net/bioclipse/services/business/ (IServiceManager.java ServiceJob.java ServiceManager.java): Refactored ServiceManager to use run instead of runService. Added convenience methods for running different inputs.
16:02 CIA-43 bioclipse: ospjuth * r5420 /bioclipse2/trunk/plugins/net.bioclipse.s​ervices/src/net/bioclipse/services/views/ (ServiceView.java ServiceViewDropAdapter.java): Updated for service manager API changes.
16:03 CIA-43 bioclipse: ospjuth * r5421 /bioclipse2/trunk/plugins/net.bioclipse​.biomoby.tests/src/net/bioclipse/biomob​y/tests/services/TestDropActions.java: Added test for multiple objects to MobyService. Fails, but will not be fixed until cleared out API for Moby to handle multiple inputs in same call.
16:03 CIA-43 bioclipse: ospjuth * r5422 /bioclipse2/trunk/plugins/net.bioclips​e.biomoby.tests/META-INF/MANIFEST.MF: Added dep to Biojava.ui for testing parsing of sequence-files using the contentprovider on providing input to service.
16:18 CIA-43 bioclipse: ospjuth * r5423 /bioclipse2/trunk/plugins/net.bioclipse.​biomoby.tests/src/net/bioclipse/biomoby/​tests/services/TestFASTAServices.java: Wrote tests for 2 sequences that are converted from FASTA to ISequence to PIR format.
16:19 CIA-43 bioclipse: ospjuth * r5424 /bioclipse2/trunk/plugins/net.bioc​lipse.biomoby/src/net/bioclipse/bi​omoby/business/BioclipseJob.java: Removed unnecessary job.
16:20 CIA-43 bioclipse: ospjuth * r5425 /bioclipse2/trunk/plugins/net.bioc​lipse.biomoby/src/net/bioclipse/bi​omoby/business/MobyConverter.java: Moved namespace conversion to helper class
16:21 CIA-43 bioclipse: ospjuth * r5426 /bioclipse2/trunk/plugins/net.​bioclipse.biomoby/plugin.xml: Minor typo in service name in manifest.
16:21 CIA-43 bioclipse: ospjuth * r5427 /bioclipse2/trunk/plugins/net.bioclipse.bi​omoby/src/net/bioclipse/biomoby/business/ (BiomobyManager.java IBiomobyManager.java): Manager updates in moby to reflect new ServiceManager calls. Not operational yet.
16:42 malick left #bioclipse
16:49 olas left #bioclipse
19:43 malick joined #bioclipse

| Channels | #bioclipse index | Today | | Search | Google Search | Plain-Text | summary