Camelia, the Perl 6 bug

IRC log for #bioclipse, 2008-04-15

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All times shown according to UTC.

Time Nick Message
06:06 egonw joined #bioclipse
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07:17 olas joined #bioclipse
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08:00 jonalv joined #bioclipse
08:00 egonw jonalv: ah, right on time...
08:00 egonw jonalv: you did the log bot, right?
08:00 egonw got some pointers for me?
08:00 egonw we'd like to set one up for #metware
08:02 jonalv sry that was masak I think. Hang on
08:02 egonw oh, was it...
08:02 egonw sorry about that
08:02 masak joined #bioclipse
08:02 masak you rang?
08:02 egonw hi masak
08:02 egonw yes...
08:02 masak egonw: hello
08:02 egonw wanted to ask about the log bot
08:02 egonw we'd like to set one up for #metware
08:03 masak I see
08:04 masak perhaps you would more profitably ask on #irclogger
08:04 masak I'm not involved in the logging of #bioclipse, more than in the sense that I contacted the people who do logging
08:11 rojasm joined #bioclipse
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09:59 stain joined #bioclipse
09:59 stain malick: #taverna is the place to be, it was just not that populated yet.. but we'll advertise it now
10:01 egonw hi stian
10:07 stain hi..
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11:55 CIA-43 bioclipse: ospjuth * r5428 /bioclipse2/trunk/plugins/net.bioclipse.biomart/: Initial import of a plugin with aims to provide general access to Biomart instances.
11:55 CIA-43 bioclipse: ospjuth * r5429 /bioclipse2/trunk/plugins/net.bioclipse.biomart/ (29 files in 11 dirs): Initial import of a plugin with aims to provide general access to Biomart instances.
12:10 egonw joined #bioclipse
12:16 olas hi egonw
12:17 egonw hi olas
12:17 egonw sorry, no news from the JCP camp
12:17 steinbeck joined #bioclipse
12:17 olas oh
12:18 olas working on a biomart plugin for bioclipse
12:18 olas just a prototype but anyway
12:18 steinbeck cool
12:18 egonw yeah, saw your email to the mart-dev ML
12:18 olas nothing yet really, got some data from Web service only
12:18 egonw but sounds excellent for metware too
12:18 olas hope so
12:19 egonw steinbeck: d'you have links to people working on Mart at the EBI?
12:19 egonw BioMart
12:19 egonw steinbeck: btw, received the book! thanx!
12:19 egonw just started, but first pages are already an excellent read
12:19 steinbeck welcome - I hope it contains at least a bit of a good thought.
12:20 steinbeck Biomart:
12:20 CIA-43 bioclipse: ospjuth * r5430 /bioclipse2/trunk/plugins/net.bioclipse.services/s​rc/net/bioclipse/services/views/DummyMonitor.java: Marked DummyMonitor as deprecated.
12:20 steinbeck I think the core developers moved away, but not sure
12:20 * steinbeck is suffering from information overload
12:20 egonw yes, I can understand
12:21 egonw I have that two, and not even that amount of formal management you have
12:22 steinbeck :-)
12:50 olas I will present at Embrace AGM next week and people from biomart will be there
13:26 malick hello jonathan
13:27 malick I have a question about IRC logs heard in a IRC forum that you know how to do this
13:33 jonalv malick, who is Jonathan? me?
13:33 malick sorry jovalv
13:33 jonalv huh?
13:34 malick yes jonathan I thought = jonalv
13:34 jonalv yea that's true :)
13:34 malick which stands for jonathan alvarson sorry that I used youre real name
13:34 jonalv but I don't know much about IRC logs.
13:35 jonalv It's just that my IRC client tells me when someone uses my  nick so please use it if you want my attention...
13:35 malick O I thought there was a discussion yesterday about it in another IRC and someone pointed out that jonalv had a solution
13:35 jonalv half true. The guy having a solution is masak. But I can summon him here.
13:35 * jonalv summons masak
13:36 masak joined #bioclipse
13:36 masak *thump*
13:36 malick hello masak
13:36 masak oh, hi
13:36 malick I'm in the taverna IRC room and we are searching for a solution to
13:36 jonalv seems that everyone wants logging :)
13:36 masak seems everyone is nowadays
13:36 malick (03:18:14 PM) dozer: also, someone needs to take responsibility from the taverna dev group to once a week greppign the log for things that should be turned into help docs and FAQ entries
13:37 masak I see.
13:37 masak malick: so you have a log?
13:37 masak but would like to grep it occasionally?
13:37 malick no I don't I pointed to them that I heard egonw yesterday noting that masak know how to do this
13:38 masak that's only partly true
13:38 masak I know people who know how to do this
13:38 malick are they present
13:38 masak nope
13:38 masak first describe what it is you would like
13:39 masak I feel I'm coming right into a discussion here
13:41 masak the #bioclipse channel has two logging solutions. one is provided by a guy called moritz on #pugs, and the other provided by someone on #irclogger
13:41 masak I suggest trying #irclogger first
13:41 masak that is, if it's logging you're after
13:41 malick (03:17:24 PM) dozer: yeah, that's where they are great
13:41 malick (03:17:31 PM) dozer: you need to log this room
13:41 malick (03:17:45 PM) dozer: and post the logs - they get hit by google when ppl type in similar issues
13:41 malick (03:18:14 PM) dozer: also, someone needs to take responsibility from the taverna dev group to once a week greppign the log for things that should be turned into help docs and FAQ entries
13:42 masak malick: ah ok. then, see above.
13:43 malick thanx masak
13:43 masak np
13:43 masak good luck
13:43 egonw malick: you might have informed me that should not worry about getting a logger installed...
13:43 egonw malick: in an email to the devel list
13:44 egonw in reply to where I said I could take care of it...
13:44 egonw now you're duplicating effort
13:45 * masak usually duplicates 3 or 4 efforts before breakfast
13:45 egonw yeah, I have to pee several times a day too...
13:45 malick no not really you are rushing in the middle of a discussion I already said that I heard from egonw that there was a solution because in the #taverna IRC they are looking for it
13:46 masak egonw: me too! inefficient, that's what it is!
13:46 masak I'd prefer it to be a once-only task
13:47 jonalv focus gentlemen focus. please...
13:48 masak jonalv: actually, I think my work here is done. I'm slowly getting blurry at the edges
13:48 masak left #bioclipse
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16:33 CIA-43 bioclipse: ospjuth * r5431 /bioclipse2/trunk/plugins/net.bioclipse.biomart/ (17 files in 7 dirs): Created test that uses martservice to retrieve datasets. Started on structure for BiomartView.
16:41 CIA-43 bioclipse: ospjuth * r5432 /bioclipse2/trunk/plugins/net.bioclipse.services/ (9 files in 3 dirs): Deleted obsolete classes.
16:45 CIA-43 bioclipse: ospjuth * r5433 /bioclipse2/trunk/plugins/net.bioclip​se.biomart/src/net/bioclipse/biomart/ (7 files in 4 dirs): Deleted obsolete biomart model and cleaned up imports and comments.
16:50 rojasm joined #bioclipse
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17:30 CIA-43 bioclipse: ospjuth * r5434 /bioclipse2/trunk/plugins/net.bioclipse.biomart/ (21 files in 7 dirs): Extracted databases from Biomart.org, displays in BiomartView with labels and icons.
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