Camelia, the Perl 6 bug

IRC log for #bioclipse, 2008-05-08

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All times shown according to UTC.

Time Nick Message
07:04 egonw joined #bioclipse
07:13 egonw joined #bioclipse
07:25 rojasm joined #bioclipse
07:35 jonalv joined #bioclipse
07:40 * jonalv is downloading masaks mew order...
07:44 rojas1 joined #bioclipse
07:45 rojasm left #bioclipse
07:50 CIA-45 bioclipse: jonalv * r5597 /bioclipse2/trunk/plugins/ (2 files in 2 dirs): new name of local user is "local" instead of "admin"
07:55 olas joined #bioclipse
07:57 masak joined #bioclipse
08:37 edrin joined #bioclipse
08:40 CIA-45 bioclipse: carl_masak * r5598 /bioclipse2/trunk/plugins/net.bioclipse​.structuredb/src/net/bioclipse/structur​edb/business/IStructuredbManager.java: [IStructuredbManager.java] removed some more tabs
09:01 CIA-45 bioclipse: jonalv * r5599 /bioclipse2/trunk/plugins/net.bioclipse.ui/src/n​et/bioclipse/ui/views/ScriptingConsoleView.java: switched from update to redraw. It seems to work better.
09:03 CIA-45 bioclipse: jonalv * r5600 /bioclipse2/trunk/plugins/net.bioclip​se.structuredb/META-INF/MANIFEST.MF: imported stuff needed to make structuredb go. Now it starts from within Bioclipse! (still no gui)
09:03 masak jonalv++
09:05 egonw jonalv+5
09:05 olas jonalv+++
09:07 jonalv ah karma
09:08 jonalv egonw, I hop you meant jonalv+=5 ? :)
09:08 egonw jonalv | /dev/null
09:09 egonw the gui is something we can do ourselves...
09:09 egonw hahahaha :)
09:09 masak egonw: I hope you meant `jonalv > /dev/null` :)
09:09 egonw ummm, yes...
09:09 jonalv well there are still quite a few missing pieces but this was anyway a big step forward
09:21 * olas got a demo and it looks lice!
09:22 jonalv okey you better show us! :)
09:22 olas hmm
09:22 olas I looked at your demo
09:23 edrin hi olas hi egonw
09:23 edrin hi jonalv, hi masak
09:24 masak hiya edrin
09:26 olas hi edrin
09:27 jonalv hi edrin
09:38 olas egonw: in CDK SF site, if you click Project > Website you are linked to Almost.cubic
09:39 egonw olas: ah, good point
09:39 egonw please file a bug report :(
09:39 egonw christoph needs to set up a new one, but has little time...
09:41 olas yup
09:43 olas you have already filed this bug on CDK
09:43 olas egonw, that is
09:43 egonw have I?
09:43 olas now: lunch!
09:44 olas bug 1957125
09:44 olas prio 9
09:44 egonw ah, that was the other way around...
09:44 olas 4 days ago
09:44 egonw cdk.sf.net pointed to almost
09:44 masak let's lunch :)
09:44 olas that's the same bug
09:44 egonw and that now at least points to sf.net/projects/cdk
09:44 olas yes
09:44 egonw no, it's different
09:44 egonw but related :)
09:45 egonw ok, have a nice sauna!
11:00 CIA-45 bioclipse: jonalv * r5601 /bioclipse2/trunk/plugins/ (2 files in 2 dirs): teardown for strucutredbManager tests now removes database files
12:09 CIA-45 bioclipse: jonalv * r5602 /bioclipse2/trunk/plugins/ (3 files in 2 dirs): Wrote tests for loading old structuredb instances when starting and for deleting instances
12:28 CIA-45 bioclipse: carl_masak * r5603 /bioclipse2/trunk/plugins/net.bioclipse.scripting​/src/net/bioclipse/scripting/JsEnvironment.java: [JsEnvironment] pretty printing for List types
12:50 masak hrnh, that oughta have been 'pretty-printing'... :)
14:55 rklancer joined #bioclipse
14:56 rklancer hi all, hi jonalv - are you around? I have a few minutes...
14:57 masak rklancer: jonalv is around, but in discussion right now
14:57 masak I'll notify him as soon as appropriate
14:58 rklancer okay -- he asked me about something but I'm packing for a weekend trip now so I'm going to have to lurk
14:58 rklancer hope that's okay :)
14:58 masak I suppose it has to be :)
14:59 masak ...here he is now
14:59 jonalv hi
15:00 jonalv actually my problem seems to have resolved it self. (Actually I have no idea what's going on) but do you think we could maybe take the time and upgrade Spring DM sometime? :)
15:02 rklancer sure I'd like to keep my hand in bioclipse and that sounds like a good idea
15:02 rklancer right now I'm learning more about R and Bioconductor and Insight Miner which are proving more immediately relevant to my thesis :)
15:02 jonalv great! ^_^
15:02 jonalv aha
15:03 rklancer yeah I guess that's how it goes
15:03 egonw rklancer: what's your thesis about again?
15:03 rklancer btw did the logging problem sort itself out?
15:04 rklancer I'm going to try to relate usability metrics to scientific productivity among a group of people who are doing SNP based genotype association studies and microarray biomarker finding
15:05 rklancer there was a thought, earlier, that there might be more of a chemoinformatics angle
15:05 rklancer but probably not
15:06 egonw ok, I understand all the words...
15:06 egonw so, *what* are you going to measure?
15:06 egonw how good departments are?
15:06 rklancer open question
15:06 rklancer it's early
15:06 rklancer no no no
15:06 egonw but surely you will measure efficiency of methods, not research groups, correct/
15:06 egonw ?
15:07 rklancer a much smaller measure -- these studies involve lots of on the fly hypothesis generation and testing
15:08 egonw ok, fair
15:08 egonw microarray analysis is tricky
15:08 egonw but the SNP side sounds interesting...
15:09 rklancer i hope so, I'm unsure how i'll design a study as I'm only now learning the details of the two studies
15:09 rklancer (they're working from the same set of clinical data)
15:09 egonw ah, that's interesting...
15:09 egonw allows you to compare things against each other...
15:10 rklancer exactly, and I hope to compare at least two different UI/software designs and be able to say something meaningful about how they perform empirically
15:10 rklancer and then relate it to the science
15:10 egonw it's a start indeed
15:11 rklancer e.g., some survey of how many hypotheses a researcher can go through over a period of time, and relate that to usability-lab type metrics
15:12 rklancer i still need a good mentor in the usability side but there are lots of people in the boston area who ought to know something
15:12 rklancer anyway, enough about myself, as they say
15:21 olas joined #bioclipse
15:22 * olas is doing a massive update of Bioclipse after masaks commit
17:06 edrin left #bioclipse
19:43 rojasm joined #bioclipse
20:10 egonw joined #bioclipse

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