Camelia, the Perl 6 bug

IRC log for #bioclipse, 2008-05-14

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All times shown according to UTC.

Time Nick Message
04:39 egonw joined #bioclipse
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08:06 edrin hi egonw
08:07 egonw hi edrin
08:07 egonw sorry... lay sort of dead on the coutch last night...
08:07 egonw -t
08:08 edrin ok
08:36 masak joined #bioclipse
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08:44 olas hmm, seem to have been disconnected
08:44 olas hi everyone anyways
08:44 jonalv hi
08:46 edrin hi olas
09:06 jonalv hm net.bioclipse.cdk is still no compiling. egonw: Do you know what I can do about it?
09:07 olas hmm
09:07 olas my commit did not work
09:07 olas plz wait
09:07 olas slow nw
09:09 CIA-45 bioclipse: ospjuth * r5623 /bioclipse2/trunk/plugins/ (2 files in 2 dirs): Adopted to structural changes in CDK.
09:11 olas does that fix your prob?
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09:13 olas jonalv: prob solved?
09:13 jonalv olas: yes
09:14 egonw olas: not funny depds of cdk.ui on cdk10.jchempaint anymore?
09:15 olas no
09:15 olas refactored out
09:15 egonw perfect
09:15 olas required a lot of code duplication :-(
09:15 olas such as a CDK10Molecule
09:15 olas and a CDK10Manager
09:15 olas really bad
09:15 egonw good :)
09:15 olas but necessary
09:15 egonw no, it's not bad
09:15 olas took me long time
09:15 egonw it's simply two implementations of the molecule concept
09:15 olas I expect problems due to this...
09:16 olas but that's the way it is
09:19 egonw olas: not sure what you did...
09:19 egonw but the JCP editor is working fine now
09:19 egonw the view is now properly updated for the model changes!
09:19 egonw Gentleman! We got outselves a JCP editor in Bioclipse2 !
09:20 egonw olas: cheers! thanx for fixing that!
09:20 jonalv w00t
09:20 olas egonw: was not aware that I fixed it :-)
09:20 egonw there's a benzene ring dancing to the Frequence3 radio music!
09:20 egonw olas: brilliant!
09:20 olas but I did rewrite a lot
09:20 olas :-)
09:21 * olas is happy about that
09:21 masak egonw: url?
09:21 egonw masak: of what?
09:21 * masak wants to see that benzene ring
09:21 egonw F3?
09:21 masak yes
09:21 olas lol
09:22 egonw masak: if you can recommend a good linux screen capture tool?
09:22 masak hm
09:22 masak PrintScreen?
09:22 masak but that would not show it dancing, only in mid-motion
09:22 CIA-45 bioclipse: ospjuth * r5624 /bioclipse2/trunk/plugins/net​.bioclipse.cdk10.jchempaint/ (META-INF/MANIFEST.MF plugin.xml): Removed dep from cdk10 to cdk.business
09:24 * olas will make a screen cast of the SDFEditor tomorrow
09:24 jonalv egonw: Could you give me this SMILES molecule in SMARTS: "C1CCCCC1CCO" ?
09:24 * olas has a good screen capture tool for Mac
09:25 * jonalv really sucks att chemoinformatics... :(
09:25 olas left #bioclipse
09:25 egonw jonalv: see #cdl
09:25 egonw #cdk
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10:11 * jonalv @ lunch
11:27 egonw joined #bioclipse
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11:57 CIA-45 bioclipse: jonalv * r5625 /bioclipse2/trunk/plugins/net.bioclip​se.usermanager/src/net/bioclipse/user​manager/business/IUserManager.java: Added params to accountExists publication. Fixes bug #1963125
12:25 olas joined #bioclipse
12:43 CIA-45 bioclipse: egonw * r5626 /bioclipse2/trunk/plugins/net.bioclipse​.structuredb/src/net/bioclipse/structur​edb/business/StructuredbManager.java: Added code to count how much work needs to be done
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15:46 CIA-45 bioclipse: jonalv * r5627 /bioclipse2/trunk/plugins/ (7 files in 4 dirs):
15:46 CIA-45 bioclipse: Wrote console progressmonitor and hooked it up to addStructuresFromSDFFile in
15:46 CIA-45 bioclipse: structuredb only problem is that it doesn't update continously. Because the
15:46 CIA-45 bioclipse: console uses the main thread for running commands with the main thread doesn't
15:46 CIA-45 bioclipse: get around to updating the console view until after the command is done. It
15:46 CIA-45 bioclipse: should work once we fix that though.
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