Camelia, the Perl 6 bug

IRC log for #bioclipse, 2008-06-04

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All times shown according to UTC.

Time Nick Message
05:25 rojasm joined #bioclipse
06:40 rojasm joined #bioclipse
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07:18 Gpox joined #bioclipse
07:49 egonw joined #bioclipse
07:51 rojasm I am trying to fix a plugin for rdfeditor
07:56 egonw rojasm: BC1 or BC2?
07:56 egonw rojasm: anyway... won't say much today...
07:56 rojasm in BC2
07:56 egonw got my presentations for Thu and Mon to prepare...
07:56 rojasm me too!
07:56 egonw will you be in Utrecht tomorrow too?
07:56 rojasm yes
07:56 egonw ok, good
07:56 egonw we can talk about the plugin then in the afternoon
07:57 rojasm perfect it is a good point
08:00 olas joined #bioclipse
08:01 rojasm Hi olas
08:01 olas hi
08:02 rojasm I have a doubt conserning sdfEditor
08:02 rojasm If I would like to implement some think like sdfEditor but for rdf with reaction
08:03 rojasm should we change the model how sdfEditor is working or should we only copypaste the sdfEditor to rdfEditor but specific for reaction
08:05 olas I think we should have an RDFEditor
08:06 olas dedicated for reactions
08:17 * egonw is proud that some of his humble work lead to a riot in blogosphere :)
08:19 olas URL?
08:22 edrin joined #bioclipse
08:22 egonw last seems to be: http://www.simbiosys.ca/blog/2008/06/03/quali​ty-in-chemical-software-the-debate-continues/
08:23 egonw starting with this post:
08:23 egonw http://chem-bla-ics.blogspot.com/2008​/06/finding-differences-between.html
08:23 edrin hi
08:23 egonw http://cb.openmolecules.net/ front page...
08:23 egonw top three stories :)
08:24 edrin egonw: did you have time to fix the propsal(XEP) ?
08:24 egonw edrin: no sorry...
08:24 egonw got a presentation tomorrow and a final report on monday :(
08:24 egonw after monday I have tons of time (theoretically)
08:26 edrin so maybe I should just send it now?
08:27 egonw yes...
08:29 edrin ok
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09:03 CIA-46 bioclipse: ospjuth * r5796 /bioclipse2/trunk/plugins/net.bioclipse.cdk10.​jchempaint/src/net/bioclipse/cdk10/jchempaint/​ui/editor/JCPMultiPageEditorContributor.java: Read plugin ids from registry to allow loading of icons from defining plugins.
09:06 CIA-46 bioclipse: ospjuth * r5797 /bioclipse2/trunk/plugins/net.bioclipse.d​ata.sampledata/data/misc/Fragments2.sdf: Added a sample SDFile with a few molecules for testing.
09:10 CIA-46 bioclipse: ospjuth * r5798 /bioclipse2/trunk/plugins/net.bioclipse​.cdk10.jchempaint/src/net/bioclipse/cdk​10/jchempaint/ui/editor/JCPPage.java: Set tooltip for atoms showing the atom type. Mainly used for testing purposes (tooltips do not show yet).
09:11 CIA-46 bioclipse: ospjuth * r5799 /bioclipse2/trunk/plugins/net.bioc​lipse.cdk10.jchempaint/plugin.xml: Set icon for CPK colorer action.
09:23 EskilA joined #bioclipse
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10:06 egonw Uppsala: when do the school holiday start in Sweden?
10:45 olas more or less now
10:53 edrin left #bioclipse
10:53 edrin joined #bioclipse
10:53 edrin why?
10:55 edrin egon has holidays now?
11:04 olas shk3, egonw: is it possible to write custom text in JCP?
11:04 olas like for example, some info about the current molecule
11:21 shk3 no
11:21 shk3 sorry
11:21 CIA-46 bioclipse: goglepox * r5800 /bioclipse2/trunk/plugins/net.bioclipse.​cdk10.jchempaint/src/net/bioclipse/cdk10​/jchempaint/ui/editor/DrawingPanel.java: Enable tooltip drawing by adding Render2D as a MouseMotionListener
11:21 shk3 it's not a bug, it's a feature
11:21 shk3 the idea was only to have chemical meaningfull entities in there
11:21 shk3 no other stuff like in graphics programs
11:22 shk3 so you cannot paint an arrow from a molecule to another one
11:22 shk3 (which you can do in many molecular drawing programs)
11:22 shk3 but you say this is a product, this is an educt, and it get's represented as an arrow
11:23 shk3 you see the difference?
11:23 shk3 so the short answer is no
11:31 EskilA_ joined #bioclipse
11:36 CIA-46 bioclipse: goglepox * r5801 /bioclipse2/trunk/plugins/net.bioclipse.c​dk10.jchempaint/src/net/bioclipse/cdk10/j​chempaint/ui/editor/PopUpListener.java: Fixed ClassCastException for SDFEditor
11:37 thomas_ku joined #bioclipse
11:39 CIA-46 bioclipse: goglepox * r5802 /bioclipse2/trunk/plugins/net.bioclipse​.cdk10.jchempaint/src/net/bioclipse/cdk​10/jchempaint/ui/editor/JCPPage.java: Fix for tooltip generation (they should show now)
11:54 egonw joined #bioclipse
12:31 CIA-46 bioclipse: ospjuth * r5803 /bioclipse2/trunk/plugins/net​.bioclipse.cdk10.jchempaint/ (3 files in 3 dirs): Added ColorByCPK action.
12:33 * egonw notices some user wishes that get implemented
12:33 * egonw would have suggested to use editor settings/properties for these kind of things...
12:34 egonw and wonders how often people switch during an editor session
12:34 * egonw is also looking forward to the ColorBySMARTS action
12:34 * egonw will now shut up again
12:53 rojasm joined #bioclipse
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13:36 CIA-46 bioclipse: ospjuth * r5804 /bioclipse2/trunk/plugins/net.bioclipse.cdk10.​jchempaint/src/net/bioclipse/cdk10/jchempaint/​ui/editor/JCPMultiPageEditorContributor.java: Removed unused import.
15:25 malick left #bioclipse
15:56 rojasm see you later
16:31 edrin left #bioclipse
19:17 thomas_ku joined #bioclipse
19:41 rojasm joined #bioclipse

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