Camelia, the Perl 6 bug

IRC log for #bioclipse, 2008-06-09

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All times shown according to UTC.

Time Nick Message
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06:56 CIA-46 bioclipse: miguelrojasch * r5822 /bioclipse2/trunk/plugins/net.bioclipse.cdk10.rdf​editor/src/net/bioclipse/cdk10/rdfeditor/editor/ (ReactionSaveHelper.java ReactionTablePage.java): increase size of the column for reaction table
07:01 olas joined #bioclipse
07:02 olas hi all
07:15 rojasm Hi ola
07:16 rojasm I created a plugin for reaction
07:16 rojasm and I updated all method to center a reaction in cdk
07:16 rojasm hi olas!
07:26 olas hi rojasm
07:26 olas any luck with the plugin?
07:26 olas please write up a wiki page
07:26 olas preferably with a screenshot
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07:32 rojasm I tried to login in the wiki
07:32 olas_ joined #bioclipse
07:32 rojasm but not success
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07:34 rojasm olas_ I tried to login in the the bioclipsewiki
07:34 olas_ ok
07:34 rojasm but any success
07:34 rojasm I don't remember anymore
07:34 olas_ ok
07:35 olas_ your username?
07:35 rojasm and I think the email there is from Cologne which I don't have access
07:35 rojasm I think miguelrojasch
07:39 olas_ what's your preferred email, rojasm?
07:39 rojasm miguelrojasch@yahoo.es
07:41 olas_ ok
07:41 olas_ your user: rojasm
07:42 olas_ check your email for pwd
07:42 olas_ looking forward to reading about the plugins
07:46 rojasm perfect thanks
07:47 rojasm I am already in
07:47 rojasm :)
07:52 CIA-46 bioclipse: carl_masak * r5823 /bioclipse2/trunk/plugins/net.bioclipse.ui/​src/net/bioclipse/ui/editors/Aligner.java:
07:52 CIA-46 bioclipse: [Aligner.java] no longer renders a lot of sequences outside
07:52 CIA-46 bioclipse: of the viewport. now much faster.
07:55 rojasm a question! I saw that for rdf files in the Bioclipse Explorer you can see the individual structures! is it still possible?
07:55 olas_ kindof
07:56 olas_ you need cdk.ui
07:56 olas_ they are not rendered by cdk10
07:56 olas_ and not synchronized
07:56 rojasm achso
07:56 olas_ ja
07:56 olas_ so ist es
07:57 rojasm mmm that means the cdk.ui must migrate to cdk10.ui
07:57 olas_ or demigrate
07:58 olas_ should be fairly trivial
07:58 olas_ but it is a general problem
07:58 olas_ taht needs to be resolved
07:58 olas_ it should use the IMolecule interface
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08:02 jonalv net.bioclipse.cdk10 is not compiling
08:03 jonalv more precisely CDK10Reaction can not find: net.bioclipse.core.domain.IReaction
08:09 olas_ rojasm: please make sure that commits are complete by updating after them and verifying that things compiles
08:09 olas_ please make that a habit
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08:15 rojasm strange
08:15 rojasm I will have a look
08:15 edrin moin
08:16 rojasm mmm sorry I fond that
08:17 CIA-46 bioclipse: miguelrojasch * r5824 /bioclipse2/trunk/plugins/net.bioclipse.core/ (4 files in 3 dirs): Added reaction domain
08:17 rojasm found the mistake
08:17 rojasm done
08:17 rojasm olas try now please if all is correct
08:19 olas_ hi edrin
08:19 edrin hi olas_
08:19 olas_ rojasm, jonalv is keen on that
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08:21 jonalv yea well I like when my Bioclipse starts after I have updated... :)
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14:09 olas no commits today :-(
14:09 * olas is disappointed
14:15 edrin heh
14:15 masak olas: not true
14:16 masak I made 2, I think
14:16 masak among others my 20x speedup of the alignment editor
14:17 jonalv masak++
14:24 jonalv masak: sprintf inga decimaler hjälp mig
14:24 masak jonalv: english or #farmbio?
14:26 masak (your client sucks, btw)
14:26 jonalv masak, skit på dig
14:26 masak still speaking swedish?
14:27 jonalv aaaahhh this is #Bioclipse
14:27 jonalv sry
14:27 masak told you
14:27 masak your client sux
14:27 jonalv I am moving real soon now
14:27 masak do that
14:28 jonalv what should I use on OSX then+
14:28 masak ERC
14:28 edrin i am using jabber
14:30 edrin everything seems to work :)
14:39 olas edrin: how did you get that promo?
14:39 * olas wants to be promoted as well...
14:39 masak edrin: whoa
14:39 masak I'm switching to jabber
14:54 edrin that's because i got chan admin when i created the chanserv service in #bioclipse
15:00 edrin cant figure out how to modify the access list right now
15:00 edrin sorry :/
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