Camelia, the Perl 6 bug

IRC log for #bioclipse, 2008-06-17

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All times shown according to UTC.

Time Nick Message
05:03 berry_nl joined #bioclipse
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07:30 edrin joined #bioclipse
07:30 edrin hi
07:31 jonalv hi edrin
07:31 edrin hi jonalv
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07:34 olas hi all
07:35 edrin hey olas
07:41 olas bye edrin
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08:03 CIA-47 bioclipse: jonalv * r5849 /bioclipse2/trunk/plugins/ (net.bioclipse.hsqldb.tests/ net.bioclipse.moss/): Added bin to svn:ignore
08:11 edrin joined #bioclipse
08:23 CIA-47 bioclipse: ospjuth * r5850 /bioclipse2/trunk/plugins/net.bioclipse.jmol/ (3 files in 3 dirs): Synchronize selections in structureTable with jmol so 3D mols now are displayed in jmolView. Also made jmol script commands to execute in jmolView as well as JmolEditor.
08:26 CIA-47 bioclipse: ospjuth * r5851 /bioclipse2/trunk/plugins/net.biocl​ipse.ui.tests/META-INF/MANIFEST.MF: Updated deps for manifest.
08:27 CIA-47 bioclipse: ospjuth * r5852 /bioclipse2/trunk/plugins/net.biocli​pse.core/src/net/bioclipse/core/busi​ness/ChemicalStructureProvider.java: Removed ChemicalStructureProvider interface. Replaced with getAdapter(ICDKMolecule.class).
08:28 CIA-47 bioclipse: ospjuth * r5853 /bioclipse2/trunk/plugins/net.bioclipse.cdk10.sdf​editor/src/net/bioclipse/cdk10/sdfeditor/editor/ (StructureTableEntry.java StructureTablePage.java): Use getAdapter() instead of ChemicalStructureProvider.
08:28 CIA-47 bioclipse: ospjuth * r5854 /bioclipse2/trunk/plugins/net.biocl​ipse.cdk10.jchempaint/src/net/biocl​ipse/cdk10/business/RDFWriter.java: Catch uncaught exception.
08:28 CIA-47 bioclipse: ospjuth * r5855 /bioclipse2/trunk/plugins/net.bioclips​e.cdk.ui.tests/src/testFiles/mal.sdf: Updated test file.
08:29 CIA-47 bioclipse: ospjuth * r5856 /bioclipse2/trunk/plugins/net.biocli​pse.cdk.ui/src/net/bioclipse/cdk/ui/​views/MoleculeContentProvider.java: Removed unused code.
08:30 CIA-47 bioclipse: ospjuth * r5857 /bioclipse2/trunk/plugins/net.bioclips​e.cdk.business.test/src/net/bioclipse/​cdk/domain/tests/TestCDKMolecule.java: Added test with hardcoded CML as input. Tests CDK bug when persisting atom types.
08:30 CIA-47 bioclipse: ospjuth * r5858 /bioclipse2/trunk/plugins/net.biocl​ipse.biomoby.ui/src/net/bioclipse/b​iomoby/ui/views/SeaHawkView.java: Remove unused SeaHawkView.
08:34 egonw joined #bioclipse
08:49 edrin hi egonw
08:49 edrin egonw: did you notice this OpneSpime post in WS-XMPP mailing list?
09:17 egonw yes, saw the header...
09:17 egonw did not check what it is yet
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09:32 CIA-47 bioclipse: jonalv * r5859 /bioclipse2/trunk/plugins/​net.bioclipse.structuredb/ (3 files in 3 dirs): Removed sample view from structuredb plugin
11:30 CIA-47 bioclipse: ospjuth * r5860 /bioclipse2/trunk/plugins/net.bioclipse​.pcore/src/net/bioclipse/pcore/editors/ (3 files): Handle removal of queries, add button for execution of queries.
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11:57 CIA-47 bioclipse: ospjuth * r5861 /bioclipse2/trunk/plugins/net.bioclipse.pcore/s​rc/net/bioclipse/pcore/editors/PcorePage.java: Catch and report errors when adding file without molecules.
12:02 Gpox joined #bioclipse
12:06 CIA-47 bioclipse: ospjuth * r5862 /bioclipse2/trunk/plugins/net.bioclipse.pcore/s​rc/net/bioclipse/pcore/editors/PcorePage.java: Post selections to jmol
12:14 CIA-47 bioclipse: jonalv * r5863 /bioclipse2/trunk/plugins/net.bioclipse.s​tructuredb/src/net/bioclipse/structuredb/ (2 files in 2 dirs): First Gui thing (create local instance) for Structuredb now works but the dialog looks terrible on OSX... :(
12:46 Gpox joined #bioclipse
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13:04 CIA-47 bioclipse: ospjuth * r5864 /bioclipse2/trunk/plugins/net.bioclipse.pcore/s​rc/net/bioclipse/pcore/editors/PcorePage.java: Performs searching but got no molecules to test query with.
13:13 jonalv joined #bioclipse
13:25 CIA-47 bioclipse: ospjuth * r5865 /bioclipse2/trunk/plugins/net.bioclipse.pcore/s​rc/net/bioclipse/pcore/editors/PcorePage.java: Added functionality to check/decheck all in molViewer.
14:29 thomas_ku_ joined #bioclipse
14:30 CIA-47 bioclipse: carl_masak * r5866 /bioclipse2/trunk/plugins/net.bioclipse.ui/​src/net/bioclipse/ui/editors/Aligner.java:
14:30 CIA-47 bioclipse: [Aligner]
14:30 CIA-47 bioclipse: * fixed bug rep'd by jonalv++:
14:30 CIA-47 bioclipse: ** selection along consensus got squashed
14:30 CIA-47 bioclipse: ** now it selects all sequences
14:30 CIA-47 bioclipse: * semi-transparent selection
14:30 CIA-47 bioclipse: * whitespace improvements
15:15 CIA-47 bioclipse: jonalv * r5867 /bioclipse2/trunk/plugins/net.bioclipse.str​ucturedb.tests/tests/net/bioclipse/structur​edb/business/StructuredbManagerTest.java: The tests can now be run on MacOSX (hopes in linux too) thanks Gpox++
15:16 CIA-47 bioclipse: jonalv * r5868 /bioclipse2/trunk/plugins/net.bioclipse.st​ructuredb/src/net/bioclipse/structuredb/di​alogs/CreateStructureDatabaseDialog.java: The create local structuredb dialog now looks good in OSX too
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