Camelia, the Perl 6 bug

IRC log for #bioclipse, 2008-06-19

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All times shown according to UTC.

Time Nick Message
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07:44 olas moin
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08:21 edrin joined #bioclipse
08:22 edrin hi
08:26 malick joined #bioclipse
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09:20 CIA-48 bioclipse: ospjuth * r5879 /bioclipse2/trunk/plugins/net.bioclipse.jmol​/src/net/bioclipse/jmol/views/JmolView.java: Prepared for highlighting.
09:21 CIA-48 bioclipse: ospjuth * r5880 /bioclipse2/trunk/plugins/net.biocl​ipse.cdk.business/src/net/bioclipse​/cdk/domain/MoleculeSelection.java: Created a MoleculeSelection that can be retrieved via getAdapter() to highlight atoms and bonds in a view.
09:33 jonalv joined #bioclipse
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09:51 shk3 Hi all!
09:51 shk3 The Bioclipse-based NMRShiftDB-client has been released.
09:52 shk3 see http://sourceforge.net/foru​m/forum.php?forum_id=837153
10:44 edrin congratulation
10:44 masak shk3++
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11:56 CIA-48 bioclipse: jonalv * r5881 /bioclipse2/trunk/plugins/ (3 files in 2 dirs): refactored number of entries in a sdf file into a cdk-manager method
12:10 jonalv olas, egonw, for you information: I will take a few moments ordering up stuff in the cdk manager now
12:10 egonw huh?
12:11 jonalv I felt it might concern you... If not just ignore me :)
12:14 egonw well, I'm sure what you said you are going to do?
12:14 egonw ordering up? what's that?
12:14 egonw clean up?
12:14 jonalv publish methods, javadoc, and cleaning up yea :)
12:15 egonw ah, ok good!
12:16 jonalv egonw: is it "cdk" or "CDK" btw? :)
12:16 egonw CDK
12:16 egonw it's an acrynoym
12:16 egonw acronym
12:17 jonalv k
12:17 edrin hi egonw
12:18 egonw hi edrin
12:18 edrin quite happy that the xep went through
12:18 egonw yes, really good news
12:19 egonw important to roll out the applications now
12:19 egonw -the
12:22 edrin yes
12:22 edrin i will do code now again
12:29 jonalv edrin: welcome back :)
12:53 EskilA I'm trying to create a folder on the bioclipse svn for the port of the charting plugin to bioclipse 2, but I'm not allowed apparently
12:55 egonw does other write access work?
12:56 EskilA don't know, was a long time since i submitted anything to that repo
12:56 EskilA I get a message back about authorization failure
12:56 egonw try a typo fix somewhere...
12:57 egonw did you recently change your password?
12:57 EskilA yes
12:57 egonw that is, after that possible security breach...
12:57 egonw ok
12:58 EskilA I don't have any problem with logging in to SF
12:58 egonw SSH key still in order?
12:58 egonw did you update that too?
12:58 EskilA no
12:59 egonw check that they still have a key for you
12:59 egonw the deleted suspect keys, after that debian openssl bussiness
12:59 EskilA ah
12:59 EskilA how can I check it?
12:59 egonw your account page on SF, I guess
13:00 * egonw is going to relocate to his other desk
13:00 egonw bbl
13:04 CIA-48 bioclipse: jonalv * r5882 /bioclipse2/trunk/plugins/net.bioclipse.cd​k.business/src/net/bioclipse/cdk/business/ (CDKManager.java ICDKManager.java): cleaned up and published a bunch of methods in the cdk manager.
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13:20 EskilA I created an SSH key and submitted it to SF, is there anything more I need to do to get subclipse working?
13:22 EskilA I'm not listed as a Developer on SF either, is that important?
13:40 egonw not necessarily
13:40 egonw what's your SF account?
13:42 EskilA biocoder
13:42 egonw I'll check
13:42 EskilA thanks
13:43 egonw you are listed having SVN write access
13:43 EskilA oh, ok
13:43 egonw might take some time for the key to propagate to the SVN server
13:43 EskilA yeah, that's probably it
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14:22 olas EskilA: all working now with SVN?
14:22 EskilA let me check
14:24 EskilA no, but I only get to specify my username and password on creation, should'nt i be prompted for an SSH key or something?
14:24 egonw weird
14:25 EskilA do I need another version of subclipse or something?
14:26 egonw please try from the command line
14:27 EskilA I don't know how to use the command line svn properly, would you mind pasting the command(s) for creating a folder called net.bioclipse.chart in /bioclipse2/trunk/plugins ?
14:29 egonw cd /bioclipse2/trunk/plugins
14:29 egonw mkdir net.bioclipse.chart
14:29 egonw svn add net.bioclipse.chart
14:29 egonw svn commit -m "Added folder for the chart plugin" net.bioclipse.chart
14:29 masak we're developing a bot here at the Uppsala offices. I was wondering if anyone has a better suggestion than putting it somewhere in the bc repository
14:30 masak the bot will keep track of messages, karma and urls, and will produce various searches and janitor tasks
14:31 masak we already have a server where we can run it
14:32 masak just thinking about where the source code belongs -- in the bc repo or somewhere else
14:35 jonalv masak: https://bioclipse.svn.source​forge.net/svnroot/bioclipse/
14:35 masak jonalv: dz
14:38 egonw https://bioclipse.svn.sourceforge​.net/svnroot/bioclipse/bot/trunk/
14:40 masak egonw: even though this is not specific to bioclipse 1?
14:40 masak hm, nvm :)
14:40 masak I'll put it there
14:40 egonw right... that bioclipse is the project's root folder
14:41 masak 'xactly
14:41 masak I'm getting old
14:41 egonw :)\
14:47 EskilA just getting permission denied
14:47 olas left #bioclipse
14:50 masak I suppose there's no danger in editing things files while a checkout is in progress?
14:50 masak s/things //
14:52 egonw no idea
14:52 egonw EskilA: no idea what to try next...
14:52 EskilA ok
14:53 EskilA maybe I'm not doing something right, I can get some help on monday
15:32 CIA-48 bioclipse: carl_masak * r5883 /bot/ (. trunk/ trunk/zarah.pl): [bot] initial commit of zarah, the bioclipse bot
15:37 egonw bye all
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