Camelia, the Perl 6 bug

IRC log for #bioclipse, 2008-07-01

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All times shown according to UTC.

Time Nick Message
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07:53 jonalv hi all
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08:37 CIA-48 bioclipse: jonalv * r6019 /bioclipse2/branches/withSpring_1.0.2/net.b​ioclipse.target.platform/spring-osgi-1.0.2/ (2246 files in 987 dirs): Added Spring-osgi to target platform in branch ( I thought I had done this already, maybe the commit didn't stick :) )
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08:46 edrin m
08:46 edrin oin
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09:23 olas moin edrin
09:23 edrin hi olas
09:29 jonalv what is wrong with cdk10.jchempaint?
09:29 jonalv The constructor AtomEditor() is undefined
09:29 egonw jonalv: ping Stefan...
09:29 egonw he has been fixing things in cdk10
09:29 egonw and since he does not have Bioclipse2 up and running yet, I guess he did not spot the problem in cdk10.jchempaint
09:30 * egonw is relocating to Biometris
09:30 egonw bbl
09:30 olas shk3 seems not to be here...
09:30 jonalv nope he is not here...
09:31 jonalv olas: there is also something wrong with net.bioclipse.services
09:31 jonalv handlers
09:31 jonalv ClustalW
09:31 jonalv Do you see that too or is it just here?
09:46 CIA-48 bioclipse: ospjuth * r6020 /bioclipse2/trunk/plugins/net.bioclipse.jmol​/src/net/bioclipse/jmol/views/JmolView.java: After select all + script, issue select none (if not a selection argument). Also removed some debug outs.
09:48 CIA-48 bioclipse: ospjuth * r6021 /bioclipse2/trunk/plugins/net.biocl​ipse.pcore/src/net/bioclipse/pcore/ (4 files in 2 dirs): Added model for Hits for the HitsViewer.
09:49 CIA-48 bioclipse: ospjuth * r6022 /bioclipse2/trunk/plugins/net.biocl​ipse.pcore/src/net/bioclipse/pcore/ (4 files in 2 dirs): Use new hits model.
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10:27 edrin hi egon
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11:21 CIA-48 bioclipse: jonalv * r6023 /bioclipse2/trunk/ (43 files in 43 dirs): added a bunch of bin folders to svn:ignore
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11:47 CIA-48 bioclipse: carl_masak * r6024 /bioclipse2/trunk/plugins/net.bioclipse.ui/​src/net/bioclipse/ui/editors/Aligner.java: [Aligner] now selects immediately on mousedown
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12:11 CIA-48 bioclipse: jonalv * r6025 /bioclipse2/branches/withSpring_1.0.2/net​.bioclipse.target.platform/spring-osgi-1.​0.2/lib/log4j.osgi-1.2.15-SNAPSHOT.jar: [branch] removed log4j bundle from target platform in order to force the one in net.bioclipse.logger to be used. Now the logger plugin starts at least but still logger errors...
12:52 CIA-48 bioclipse: carl_masak * r6026 /bioclipse2/trunk/_playground_/net.bioc​lipse.templateUI/src/net/bioclipse/temp​late/actions/DummyActionHandler.java: [DummyActionHandler] removed superfluous imports, overrides
13:10 CIA-48 bioclipse: carl_masak * r6027 /bioclipse2/trunk/plugins/net.bioclipse.ui/​src/net/bioclipse/ui/editors/Aligner.java: [Aligner] now scrolls when selection drawn outside of viewport
13:24 CIA-48 bioclipse: jonalv * r6028 /bioclipse2/branches/withSpring_1.0.2/net.bio​clipse.target.platform/spring-osgi-1.0.2/lib/ (7 files):
13:24 CIA-48 bioclipse: [branch] Switched version of slfj over log4j jars from 1.4.3 to 1.5.0
13:24 CIA-48 bioclipse: This fixes the logging problems. Spring-dm 1.0.2 obviously shipped with an old buggy version...
13:26 jonalv egonw or olas: Could one of you take a look at the cdk in the Spring-osgi 1.0.2 branch in bioclipse. I can't get it to compile...
13:26 egonw jonalv: not now, sorry
13:26 egonw really busy getting some things together regarding my metabolomics stuff
13:27 jonalv not needed right this second but maybe you have some time later on?
13:28 CIA-48 bioclipse: jonalv * r6029 /bioclipse2/branches/withSpring_1.0.2/​_playground_/net.bioclipse.springBased​PrototypePlugin/META-INF/MANIFEST.MF: [branch] Changed to new plugin names used in spring-osgi 1.0.2
13:30 egonw try tonite
13:31 egonw but likely exhausted then
13:43 olas jonalv: please come here and show me how to test it
13:44 * jonalv is moving to olas then...
14:10 CIA-48 bioclipse: ospjuth * r6030 /bioclipse2/trunk/plugins/net.bioclipse.jmol​/src/net/bioclipse/jmol/views/JmolView.java: Some updates to coloring of multiple structures.
14:10 egonw olas: .classpath is autogenerated from teh META-INF/ correct?
14:10 egonw so, .classpath does not have to be in SVN, correct?
14:22 olas hmm
14:22 olas yes
14:22 olas should be
14:22 olas this is problematic IMO
14:22 olas will have to think about it
14:25 egonw ok
14:26 * egonw is converting some MetWare modules into RCP plugins
14:26 egonw to fix some classpath issues
14:27 egonw bbl
14:27 egonw catching my train now
14:29 CIA-48 bioclipse: ospjuth * r6031 /bioclipse2/trunk/plugins/net.biocl​ipse.pcore/src/net/bioclipse/pcore/ (7 files in 4 dirs): New dialog for matching, resultdialog, counter and stopwatch now operational. Also updated so all mols working with conformers.
14:55 CIA-48 bioclipse: jonalv * r6032 /bioclipse2/branches/withSpring_1.0.2/net.bio​clipse.target.platform/spring-osgi-1.0.2/lib/ (4 files): Added Spring jar files used primarily by Structuredb to target.platform
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