Camelia, the Perl 6 bug

IRC log for #bioclipse, 2008-08-21

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All times shown according to UTC.

Time Nick Message
04:47 egonw joined #bioclipse
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05:34 Gpox joined #bioclipse
05:34 Gpox hi
05:34 zarah hi Gpox
06:44 masak joined #bioclipse
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08:05 CIA-50 bioclipse: ospjuth * r6666 /bioclipse2/trunk/plugins/net.bioc​lipse.qsar/src/net/bioclipse/qsar/ (4 files in 2 dirs): Updated to support multiple array of results with labels.
08:06 CIA-50 bioclipse: ospjuth * r6667 /bioclipse2/trunk/plugins/net.bioclipse​.qsar.test/src/net/bioclipse/qsar/test/ (DummyCalculator.java business/TestQsarManager.java): All QSAR tests passes for DummyCalculator and bogus descriptor extensions.
08:07 egonw ha, commit 6666
08:07 egonw olas++
08:15 olas coolt
08:15 masak commit of the Beast!
08:16 masak six thousant six hundred threescore and six
08:34 masak olas: http://64.233.183.104/search?q=cache:eakHRmeWaqIJ:​www.jivesoftware.com/community/blogs/jivetalks/200​8/01/24/xmpp-aka-jabber-is-the-future-for-cloud-se​rvices+what+is+xmpp&hl=en&ct=clnk&cd=4
08:34 zarah masak's link is also http://tinyurl.com/5lupx5
08:36 CIA-50 bioclipse: ospjuth * r6668 /bioclipse2/trunk/plugins/net.bioc​lipse.qsar/src/net/bioclipse/qsar/​descriptor/DescriptorResult.java: Added support for descriptorresults to carry error message.
08:36 CIA-50 bioclipse: ospjuth * r6669 /bioclipse2/trunk/plugins/net.bioc​lipse.qsar/src/net/bioclipse/qsar/​descriptor/IDescriptorResult.java: Forgot to update interface for error message access.
08:43 jonalv http://www.albinoblacksheep.com/flash/french
08:43 zarah jonalv's link is also http://tinyurl.com/ypy39m
08:45 CIA-50 bioclipse: ospjuth * r6670 /bioclipse2/trunk/plugins/net.bioc​lipse.qsar/src/net/bioclipse/qsar/​descriptor/IDescriptorResult.java: Added some crucial javadoc.
08:56 CIA-50 bioclipse: ospjuth * r6671 /bioclipse2/trunk/plugins/net.bioclipse.qsar.test/ (3 files in 3 dirs): Added test for descriptor calculations that fail.
09:41 CIA-50 bioclipse: ospjuth * r6672 /bioclipse2/trunk/plugins/net.bioclipse.qsar/ (3 files in 3 dirs): Added support for "requires3D" in extension point.
09:41 CIA-50 bioclipse: ospjuth * r6673 /bioclipse2/trunk/plugins/net.bioclipse.qsar.test/ (3 files in 3 dirs): Added test for desc requiring 3D coordinates.
09:46 CIA-50 bioclipse: shk3 * r6674 /bioclipse2/trunk/plugins/net.bioclipse.spectrum/​src/net/bioclipse/spectrum/editor/ChartPage.java: added a jsplitpane
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10:09 CIA-50 bioclipse: shk3 * r6675 /bioclipse2/trunk/plugins/n​et.bioclipse.spectrum/src/ (4 files in 2 dirs): peak and continuous chart are synchronized
10:10 edrin hi
10:10 zarah hi edrin
10:41 egonw joined #bioclipse
11:18 olas hi edrin
11:18 olas hi egonw
11:18 * olas is back from a BIG lunch at Sven Dufva
11:18 egonw hi olas, all
11:18 egonw :)
11:19 edrin hi egonw, hi olas
11:25 CIA-50 bioclipse: carl_masak * r6676 /bot/trunk/zarah.pl: [zarah] now only replies if she is addressed with "zarah:" or "zarah,"
11:31 egonw zarah: so, do you?
11:31 zarah egonw: please rephrase or stop trying to be witty :)
11:32 maclean egon: I agree with you that any suggested changes to the PDBReader stuff should be done through testcases and patches.
11:32 maclean but, as a first step: http://gilleain.blogspot.c​om/2008/08/on-models.html
11:32 zarah maclean's link is also http://tinyurl.com/6qlsra
11:32 maclean now, to lunch!
11:33 CIA-50 bioclipse: ospjuth * r6677 /bioclipse2/trunk/plugins/net.bioclipse.qsar/ (3 files in 3 dirs): Implemented parameters for descriptors.
11:34 CIA-50 bioclipse: ospjuth * r6678 /bioclipse2/trunk/plugins/net.bioclipse.qsar.test/ (2 files in 2 dirs): Wrote tests for descriptor parameters. Also refactored large tests to smaller ones.
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12:26 CIA-50 bioclipse: shk3 * r6679 /bioclipse2/trunk/plugins/net.bioclipse.spectrum/ (6 files in 4 dirs): added peak labels
12:29 CIA-50 bioclipse: shk3 * r6680 /bioclipse2/trunk/plugins/net.​bioclipse.spectrum/.classpath: these classes must be included
12:44 zarah joined #bioclipse
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13:05 CIA-50 bioclipse: shk3 * r6681 /bioclipse2/trunk/plugins/net​.bioclipse.spectrum/src/spok/ (2 files in 2 dirs): better error handling
13:38 CIA-50 bioclipse: shk3 * r6682 /bioclipse2/trunk/plugins/n​et.bioclipse.spectrum/src/ (5 files in 3 dirs): more todos fixed
14:06 malick joined #bioclipse
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14:48 CIA-50 bioclipse: ospjuth * r6683 /bioclipse2/trunk/plugins/net.bioclipse​.qsar/src/net/bioclipse/qsar/business/ (IQsarManager.java QsarManager.java): Correctly handle error calculations.
14:49 CIA-50 bioclipse: ospjuth * r6684 /bioclipse2/trunk/plugins/net.biocli​pse.qsar.test/src/net/bioclipse/qsar​/test/business/TestQsarManager.java: Correctly test errors in single mols.
14:49 CIA-50 bioclipse: ospjuth * r6685 /bioclipse2/trunk/plugins/net.bioclipse.cdk.qsar/ (3 files in 3 dirs): Tests for calculation of Bpol descriptor passes.
14:50 olas left #bioclipse
15:07 CIA-50 bioclipse: carl_masak * r6686 /bioclipse2/trunk/plugins/​net.bioclipse.biojava.ui/ (8 files in 3 dirs): [net.bioclipse.biojava.ui] stubbed AlignmentEditor zoom feature
15:25 CIA-50 bioclipse: jonalv * r6687 /bioclipse2/trunk/plugins/ (8 files in 5 dirs): Made light weight sdf parsing use the bioclipse cache. Gpox++
15:27 egonw http://technology.timesonline.co.uk/to​l/news/tech_and_web/article4557935.ece
15:27 zarah egonw's link is also http://tinyurl.com/6745dj
15:27 egonw you just have to see this
15:27 egonw amazing
15:28 masak egonw: I've seen it. it's really nice.
16:27 CIA-50 bioclipse: jonalv * r6688 /bot/trunk/zarah.pl: zarah: just tell me...
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16:35 CIA-50 bioclipse: jonalv * r6689 /bot/trunk/zarah.pl: [zarah] boo! renders a message before restart
16:38 CIA-50 bioclipse: carl_masak * r6690 /bot/trunk/zarah.pl: [zarah] fixed last commit
16:38 zarah joined #bioclipse
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16:48 CIA-50 bioclipse: jonalv * r6691 /bot/trunk/zarah.pl: [zarah] sleeps before restarting so the message has time to show
16:48 zarah joined #bioclipse
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16:50 CIA-50 bioclipse: jonalv * r6692 /bot/trunk/zarah.pl: [zarah] sleeps longer...
16:50 zarah joined #bioclipse
17:12 CIA-50 bioclipse: carl_masak * r6693 /bot/trunk/zarah.pl: [zarah] remade things to make wiser use of the event model
17:13 zarah joined #bioclipse
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17:17 CIA-50 bioclipse: carl_masak * r6694 /bot/trunk/zarah.pl: [zarah] tried using "shutdown" instead of "quit"
17:18 zarah joined #bioclipse
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17:19 CIA-50 bioclipse: carl_masak * r6695 /bot/trunk/zarah.pl: [zarah] another vain attempt to figure stuff out
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