Camelia, the Perl 6 bug

IRC log for #bioclipse, 2008-09-02

| Channels | #bioclipse index | Today | | Search | Google Search | Plain-Text | summary

All times shown according to UTC.

Time Nick Message
02:01 m4r1in_ joined #bioclipse
03:24 m4r1in joined #bioclipse
05:48 Gpox joined #bioclipse
06:43 thomas_ku joined #bioclipse
07:29 jonalv joined #bioclipse
07:29 jonalv moin
07:29 zarah hi jonalv
08:02 maclean joined #bioclipse
08:09 shk3 joined #bioclipse
08:46 egonw joined #bioclipse
08:48 egonw moin
08:48 zarah hi egonw
08:48 thomas_ku joined #bioclipse
09:20 CIA-30 bioclipse: jonalv * r6835 /bioclipse2/trunk/plugins/net.bioclipse.cdk.ui/src​/net/bioclipse/cdk/ui/model/MoleculesFromSDF.java: fixed children
09:34 egonw jonalv: ping
09:35 jonalv egonw: pong
09:35 egonw so, where are we with Jumbo?
09:35 jonalv egonw: I have actually no idea for the moment...
09:35 egonw the cdk.business.test importing cdk10 stuff is evil
09:35 jonalv I got stuck with the sdfeditor >(
09:36 egonw did not work out the 'svn annotate', so not sure who to blame
09:36 egonw ok
09:36 jonalv but I can check now
09:36 jonalv you think it might work_
09:36 jonalv ?
09:36 egonw no, not without fixing this cdk10 dependency
09:36 egonw removing it, that is
09:37 jonalv okey
09:37 egonw mom, I'll try the svn annotate now
09:37 jonalv who's code would we be messing with?
09:37 egonw checking that now
09:38 egonw 6584     jonalv  net.bioclipse.cdk10.jchempaint,
09:38 egonw :)
09:41 jonalv hm intresting :)
09:41 egonw I'll try to remove it
09:54 CIA-30 bioclipse: jonalv * r6836 /bioclipse2/trunk/plugins/​net.bioclipse.structuredb/ (5 files in 3 dirs): renamed Label -> AnnotationUIModel
09:56 egonw jonalv: I'm having *holiday* now...
09:56 egonw so, can't escape having lunch with family
09:56 egonw bbl
09:56 jonalv cya
09:56 edrin joined #bioclipse
11:43 CIA-30 bioclipse: goglepox * r6837 /bioclipse2/trunk/plugins/net.biocli​pse.cdk.ui/src/net/bioclipse/cdk/ui/​views/MoleculeContentProvider.java: returns 'Pending..." while parsing SDFile
12:05 steinbeck joined #bioclipse
12:09 olas joined #bioclipse
12:09 olas hi
12:09 zarah hi olas
12:09 olas @msg
12:09 zarah olas: You have no new messages.
12:09 olas @tell egonw please ping me
12:09 zarah Consider it noted.
12:09 jonalv hi olas
12:10 olas @seen egonw
12:10 zarah egonw was last seen 2008-09-02T08:48:14 in #bioclipse saying 'bbl'
12:10 jonalv olas: he went for lunch...
12:10 olas ok
12:10 jonalv also said something about this being vacation...
12:11 edrin hi ola
12:11 jonalv *holiday* is was...
12:11 edrin oh
12:11 edrin hi all
12:11 zarah hi edrin
12:19 edrin zarah: This mission is too important for me to allow you to jeopardize it.
12:19 zarah edrin: eh... wha'?
12:19 maclean :)
12:19 edrin I know that you and Frank were planning to disconnect me, and I'm afraid that's something I cannot allow to happen.
12:20 edrin zarah: I know that you and Frank were planning to disconnect me, and I'm afraid that's something I cannot allow to happen.
12:20 zarah edrin: I did not understand that
12:21 edrin zarah: This conversation can serve no purpose anymore. Goodbye.
12:21 zarah edrin: that was not so easy for a little bot to understand
12:21 edrin hehe
12:22 edrin zarah: Let me put it this way, zarah. The 9000 series is the most reliable computer ever made. No 9000 computer has ever made a mistake or distorted information. We are all, by any practical definition of the words, foolproof and incapable of error.
12:22 zarah edrin: are you talking to *me*?
12:24 jonalv edrin: :)
12:44 CIA-30 bioclipse: jonalv * r6838 /bioclipse2/trunk/plugins/ (5 files in 4 dirs): [structuredb] 3 more persistence tests passes. About 21 left now...
13:21 CIA-30 bioclipse: goglepox * r6839 /bioclipse2/trunk/plugins/net​.bioclipse.cdk.ui.sdfeditor/ (5 files in 2 dirs): Refactoring of SDFEditor
13:40 edrin left #bioclipse
13:40 edrin joined #bioclipse
14:10 olas joined #bioclipse
14:10 olas hi
14:10 zarah hi olas
14:11 olas @seen egonw
14:11 zarah egonw was last seen 2008-09-02T08:48:14 in #bioclipse saying 'bbl'
14:12 egonw joined #bioclipse
14:13 olas hi egonw
14:13 olas could you help me?
14:13 shk3 hi egonw
14:14 shk3 do we have/plan a successor for the child handling stuff of bc1 in bc2?
14:16 maclean Hey, olas, who is this mysterious "Sam & Joe" team responsible for the jnanotube plugin?
14:16 olas no idea
14:17 olas mysterious people from india :-)
14:17 maclean Ohhhhh.
14:17 maclean Tack.
14:25 shk3 may I take the opportunity to draw you attention to my question once more?
14:27 jonalv sourceforge.net
14:27 olas shk3: sorry
14:27 olas ask jonalv
14:27 jonalv hm
14:27 olas the answer is yes
14:27 olas child creation
14:27 olas in bioclipse explorer
14:27 olas jonalv + Gpox have been working on it
14:28 shk3 sounds good
14:28 shk3 where can I find example code/documentation?
14:29 jonalv Gpox is working on it )(
14:29 jonalv :)
14:29 shk3 ok, no problem
14:29 shk3 will wait
14:30 shk3 just transferring stuff from bc1 and it is used in the specmol stuff
14:30 shk3 so I leave this right now and will do it later
14:31 jonalv shk3: it's complicated...
14:31 shk3 really?
14:31 shk3 that bad?
14:32 jonalv mhm, it's about not parsing things multiple times. Caching things. and stuff...
14:32 shk3 oh yes
14:33 shk3 that were major problems in bc1
14:33 jonalv anyway the code you can look at is for sdf files and the sdf editor
14:33 jonalv although it appears to be called Molecules ediotr since a few hours ago...
14:35 CIA-30 bioclipse: ospjuth * r6840 /bioclipse2/trunk/plugins/net.bioclipse.cdk.busine​ss/src/net/bioclipse/cdk/business/CDKManager.java: Fixed sybyl atom typing; aromaticity detection did not work on previously sybyl-atomtyped atoms.
14:49 shk3 jonalv: thanks
14:50 edrin I feel much better now, I really do.
14:50 shk3 glad to hear this
14:50 edrin Look Dave, I can see you're really upset about this. I honestly think you ought to sit down calmly, take a stress pill and think things over.
14:57 olas egonw++ #nice work
14:57 edrin zarah: Do you mind if I ask you a personal question?
14:57 zarah edrin: eh... wha'?
14:57 olas egonw++ #that's for fast service!
14:58 edrin zarah: Are you sure you are making the right decision?
14:58 zarah edrin: are you making fun of me?
14:58 edrin :)
14:58 olas haha
14:59 edrin zarah: Open the pod bay doors please, HAL.
14:59 zarah edrin: you've just exceeded my capabilities :/
15:00 edrin zarah: I am a HAL 9000 computer. I became operational at the H.A.L. lab in Urbana, Illinois on the 12th of January, 1992.
15:00 zarah edrin: you've just exceeded my capabilities :/
15:03 edrin http://www.youtube.com/watch?v=oc8BUSOPfcY
15:03 edrin zarah: http://www.youtube.com/watch?v=oc8BUSOPfcY
15:03 zarah edrin: are you making fun of me?
15:05 edrin do you know this movie?
15:21 CIA-30 bioclipse: shk3 * r6841 /bioclipse2/trunk/plugins/net.bioclipse.core/​src/net/bioclipse/core/domain/ISpecmol.java: added file for handling assigend spectra
15:24 CIA-30 bioclipse: shk3 * r6842 /bioclipse2/trunk/plugins/net.bioclipse.​spectrum/src/net/bioclipse/spectrum/cont​enttypes/CmlSpectrumFileDescriber.java: the spectrum file describer ignores specmol files
15:35 CIA-30 bioclipse: shk3 * r6843 /bioclipse2/trunk/plugins/net.bioclipse.specmol/: Initial import of specmol plugin
15:46 CIA-30 bioclipse: shk3 * r6844 /bioclipse2/trunk/plugins/net.bioclipse.specmol/ (60 files in 19 dirs): Initial import of specmol plugin
15:46 olas @tell egonw sent you email about sybyl bug: C.ar is not detected
15:46 zarah Consider it noted.
15:52 edrin i am going home
15:52 edrin cu
15:52 edrin cu later maybe
15:52 edrin left #bioclipse
15:54 CIA-30 bioclipse: shk3 * r6845 /bioclipse2/trunk/plugins/net.bioclipse​.data.sampledata/data/assignedspectra/ (5 files): added samples for specmol
15:55 olas left #bioclipse
16:13 CIA-30 bioclipse: shk3 * r6846 /bioclipse2/trunk/plugins/net.biocl​ipse.spectrum/META-INF/MANIFEST.MF: needed for specmol plugin
16:14 CIA-30 bioclipse: jonalv * r6847 /bioclipse2/trunk/plugins/ne​t.bioclipse.structuredb/src/ (7 files in 3 dirs): [structuredb] Current persistence tests passes. They are not all covering but it's a start at least... :)
16:16 CIA-30 bioclipse: shk3 * r6848 /bioclipse2/trunk/plugins/net.biocl​ipse.spectrum/src/net/bioclipse/spe​ctrum/editor/SpectrumEditor.java: needed for specmol plugin
16:21 CIA-30 bioclipse: shk3 * r6849 /bioclipse2/trunk/plugins/n​et.bioclipse.spectrum/src/ (2 files in 2 dirs): peak table handles nested peak lists and peak groups
16:22 CIA-30 bioclipse: jonalv * r6850 /bioclipse2/trunk/plugins/net.bioclipse.structured​b/src/net/bioclipse/structuredb/Structuredb.java: named structuredb structredb in service view
17:25 egonw @msg
17:25 zarah egonw: olas said please ping me
17:25 zarah egonw: olas said sent you email about sybyl bug: C.ar is not detected
20:34 olas joined #bioclipse
20:34 olas hi
20:34 zarah hi olas
20:34 olas egonw: did you see my email?
20:35 olas any comments? are we doing something wrong?
20:35 olas @seen egonw
20:35 zarah egonw was last seen 2008-09-02T16:16:37 in #bioclipse saying '@msg'
20:56 olas egonw: around?
20:59 * olas is tired
21:07 olas egonw: ping
21:19 olas egonw: ping
21:19 olas ok, g'night everyone
21:19 olas left #bioclipse

| Channels | #bioclipse index | Today | | Search | Google Search | Plain-Text | summary