Camelia, the Perl 6 bug

IRC log for #bioclipse, 2008-09-11

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All times shown according to UTC.

Time Nick Message
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08:06 jonalv moin
08:06 zarah hi jonalv
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09:17 CIA-32 bioclipse: goglepox * r6940 /bioclipse2/trunk/plugins/ (6 files in 4 dirs): Indexes in outline editor
09:23 malick joined #bioclipse
09:23 malick hello guys not the right place to ask such a question but I have a question about the fileformat mzxml maybe someone knows
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09:29 jonalv malick: I have never heard of it...
09:32 malick in mzxml the pairOrder can be "m/z-int" storing a base64 encoded stings of both mz-int pairs in mzdata the mz and int are separate base64encoded strings when I look at the base64 "m/z-int" pair its a blob of chars but the mess when I want to store this in SQL I'm sure someway there must be a routine with help of java to get the mz and int back to floating objects for mzdata but how should this be done when the base64 encoded data for "mz-int" in mzxml a
09:33 malick its really painfull
09:59 CIA-32 bioclipse: shk3 * r6941 /bioclipse2/trunk/plugins/net​.bioclipse.cdk.ui/plugin.xml: was multiple instead of single cml molecule
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10:31 CIA-32 bioclipse: shk3 * r6942 /bioclipse2/trunk/plugins/ne​t.bioclipse.cml/plugin.xml: the validate cml is now only visible for files
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11:10 olas hi
11:10 zarah hi olas
11:11 olas jonalv: great that you solved the jumbo problem
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12:16 CIA-30 bioclipse: ospjuth * r6943 /bioclipse2/trunk/features/net.bioclips​e.chemoinformatics-feature/feature.xml: Updated version for new release later today.
12:20 CIA-30 bioclipse: goglepox * r6944 /bioclipse2/trunk/plugins/ (3 files in 2 dirs): Updated double bond rendering
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15:00 shk3 hi olas
15:00 olas hi shk3
15:00 olas we are debugging cdk
15:01 olas big problems
15:01 shk3 so do i
15:02 shk3 I came across that atom typing problem again
15:02 shk3 but looks like I can fix the modelbuilder
15:02 shk3 fingers crossed
15:11 shk3 13/13 tests work for modelbuilder3d
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17:10 shk3 modelbuilder works
17:11 shk3 will add a proper menu entry to bioclipse tomorrow
17:17 CIA-30 bioclipse: jonalv * r6949 /bioclipse2/trunk/plugins/net.bioclip​se.structuredb/META-INF/MANIFEST.MF:
17:17 CIA-30 bioclipse: [structuredb]
17:17 CIA-30 bioclipse: Added dependency to sdfeditor plugin that is used to browse molecules
17:17 CIA-30 bioclipse: jonalv * r6950 /bioclipse2/trunk/plugins/net.bioclipse.core.​tests/src/net/bioclipse/core/MockIFile.java: made exists true for constructor taking inputstream
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