Camelia, the Perl 6 bug

IRC log for #bioclipse, 2008-09-17

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All times shown according to UTC.

Time Nick Message
04:25 CIA-30 joined #bioclipse
06:22 Gpox joined #bioclipse
06:36 malick joined #bioclipse
07:31 olas joined #bioclipse
07:31 olas moin
07:31 zarah hi olas
07:49 CIA-31 joined #bioclipse
08:01 jonalv joined #bioclipse
08:02 jonalv hi
08:02 zarah hi jonalv
08:05 rojasm joined #bioclipse
08:18 thomas_ku joined #bioclipse
09:51 CIA-32 joined #bioclipse
10:25 shk3 joined #bioclipse
11:32 jonalv joined #bioclipse
11:32 jonalv hi
11:32 zarah hi jonalv
11:33 thomas_ku joined #bioclipse
12:34 maclean joined #bioclipse
14:06 jonalv huh have we passed  7000 commits? I missed that...
14:07 jonalv bioclipse++
14:10 olas coolt
14:10 olas who di that?
14:11 olas ah, I did :-)
15:16 jonalv CIA-32: are you there?
15:48 steinbeck joined #bioclipse
15:48 steinbeck olas: around?
15:52 olas yes
15:52 olas steinbeck: yes
15:52 steinbeck Is Jarl in the institute today?
15:53 steinbeck I send him a request for a short support letter for the CDK-NIH grant.
15:53 steinbeck urgent one :-)
15:54 olas steinbeck: no
15:54 olas he is not in
15:54 olas works from home
15:54 olas (as usual :-) )
15:54 steinbeck ack - so maybe he gets the email there
15:54 olas he does
15:54 steinbeck ok, thanks
18:49 rojasm joined #bioclipse
19:00 CIA-30 joined #bioclipse
19:44 olas silent here
19:44 olas ok, I'm signing off now
19:44 olas see you tomorrow.
19:44 olas bye
19:44 olas left #bioclipse
20:47 CIA-30 joined #bioclipse
20:48 CIA-30 bioclipse: biocoder * r7023 /bioclipse2/trunk/plugins/net.bi​oclipse.chart/src/net/bioclipse/ (10 files in 5 dirs): Implemented listening feature in chart so that when data changes in a plotted cell the plot also changes.
20:48 zarah CIA-30: You have new messages. Write '@messages' to read them.
20:58 CIA-30 bioclipse: ospjuth * r6975 /bioclipse2/trunk/plugins/net.biocl​ipse.qsar.ui/src/net/bioclipse/qsar​/ui/editors/DescriptorsPage.java: Now displays parameters in viewer and allows for editing of values.
20:59 CIA-30 bioclipse: ospjuth * r6977 /bioclipse2/trunk/plugins/net.bioclipse.q​sar.ui/src/net/bioclipse/qsar/ui/wizards/ (5 files): Started working on import and export wizards. Pending answer on Eclipse newsgroup.
20:59 CIA-30 bioclipse: ospjuth * r6978 /bioclipse2/trunk/plugins/net.bioclipse.qsar.ui/ (META-INF/MANIFEST.MF plugin.xml): Missing declaration of import/export wizards.
21:20 CIA-30 bioclipse: ospjuth * r6974 /bioclipse2/trunk/plugins/net.bioclipse.qsar.ui/sr​c/net/bioclipse/qsar/ui/builder/QSARBuilder.java: Implemented sorting of results from QSAR analysis. Rows now in correct order.
21:42 CIA-30 bioclipse: ospjuth * r6980 /bioclipse2/trunk/plugins/net.biocl​ipse.cdk.qsar.test/src/net/bioclips​e/cdk/qsar/test/TestCDKQsar.java: Test new CDK descriptor calculations with atom typing and aromaticity.
21:43 CIA-30 bioclipse: ospjuth * r6982 /bioclipse2/trunk/plugins/net.biocl​ipse.cdk.qsar.test/src/net/bioclips​e/cdk/qsar/test/TestCDKQsar.java: Updated tests since I removed the parameter "checkAromaticity".
21:43 CIA-30 bioclipse: ospjuth * r6983 /bioclipse2/trunk/plugins/net.bioclip​se.cdk.qsar/src/net/bioclipse/cdk/qsa​r/impl/CDKDescriptorCalculator.java: changed if -> else if to avoid logging on all boolean occasions.
21:43 CIA-30 bioclipse: ospjuth * r6979 /bioclipse2/trunk/plugins/net.bioclipse.cdk.qsar/ (2 files in 2 dirs): Added the following routine to all CDK descriptor calculations: 1) Add explicit hydrogens, 2) Do atom typing, 3) Do aromaticity detection.
21:45 CIA-30 bioclipse: ospjuth * r6981 /bioclipse2/trunk/plugins/net.bioclipse.cdk.qsar/ (2 files in 2 dirs): Removed superfluous checkAromaticity parameter as always done now.
21:57 CIA-30 bioclipse: ospjuth * r6984 /bioclipse2/trunk/plugins/net.bioclip​se.cdk.qsar/src/net/bioclipse/cdk/qsa​r/impl/CDKDescriptorCalculator.java: Refactored out preprocessing of molecules.
21:57 CIA-30 bioclipse: carl_masak * r6985 /bot/trunk/zarah.pl: [zarah] now knows about the keyword "botsnack"
21:57 CIA-30 bioclipse: ospjuth * r6986 /bioclipse2/trunk/plugins/net.bioclipse.qsar.ui/sr​c/net/bioclipse/qsar/ui/builder/QSARBuilder.java: Now actually calculates with parameters. Wrong API call before.
22:05 CIA-30 bioclipse: ospjuth * r6987 /bioclipse2/trunk/plugins/net.biocl​ipse.qsar.ui/src/net/bioclipse/qsar​/ui/editors/DescriptorsPage.java: Updated relation between GUI elements on DescriptorPage.
22:11 CIA-30 bioclipse: ospjuth * r6988 /bioclipse2/trunk/plugins/net.bioclipse.q​sar.ui/src/net/bioclipse/qsar/ui/editors/ (DescriptorsPage.java MoleculesPage.java ResponsesPage.java): Pages are now updated with selectionprovider when switched to.
22:11 CIA-30 bioclipse: shk3 * r6989 /bioclipse2/trunk/plugins/net.bioclipse.core/s​rc/net/bioclipse/core/domain/IBibliodata.java: added a format for bibliographic data
22:11 CIA-30 bioclipse: shk3 * r6990 /bioclipse2/trunk/plugins/net.bioclipse.bibtex/ (15 files in 7 dirs): added manager etc.
22:11 CIA-30 bioclipse: shk3 * r6991 /bioclipse2/trunk/plugins/net.bioclipse.specmol/ (19 files in 5 dirs): added bibtex stuff to specmol
22:35 CIA-30 bioclipse: shk3 * r6992 /bioclipse2/trunk/plugins/net.bioc​lipse.specmol/html/maintopic.html: moved help to the right place
22:35 CIA-30 bioclipse: shk3 * r6993 /bioclipse2/trunk/plugins/net.b​ioclipse.bibtex/doc/about.html: moved help to the right place
22:39 CIA-30 bioclipse: ospjuth * r6994 /bioclipse2/trunk/plugins/net.bioclipse.cd​k.business/src/net/bioclipse/cdk/business/ (CDKManager.java ICDKManager.java): Implemented parsing of SmilesFiles.
22:40 CIA-30 bioclipse: ospjuth * r6995 /bioclipse2/trunk/plugins/net.b​ioclipse.cdk.business.test/src/ (3 files in 3 dirs): Cleanud up tests. Added test for Smiles file.
22:41 CIA-30 bioclipse: ospjuth * r6996 /bioclipse2/trunk/plugins/net.bioclipse.q​sar.ui/src/net/bioclipse/qsar/ui/editors/ (6 files): Removed unused classes.
23:47 CIA-30 bioclipse: ospjuth * r6997 /bioclipse2/trunk/plugins/net.bioc​lipse.qsar.ui/src/net/bioclipse/qs​ar/ui/editors/MoleculesPage.java: Made it possible to drop Files containing molecules to molViewer in Molecules page. If located in another project, resources are copied into "molecules" folder of the QSAR project.

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