Camelia, the Perl 6 bug

IRC log for #bioclipse, 2008-09-19

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All times shown according to UTC.

Time Nick Message
05:07 thomas_ku joined #bioclipse
06:38 rojasm joined #bioclipse
07:07 Gpox joined #bioclipse
07:32 CIA-30 bioclipse: goglepox * r7043 /bioclipse2/trunk/plugins/net.bioclipse.cdk.u​i.sdfeditor/src/net/bioclipse/cdk/ui/sdfedito​r/editor/MoleculesEditorContentProvider.java: Replaced NA with index
07:50 jonalv joined #bioclipse
07:50 jonalv hi
07:50 zarah hi jonalv
07:58 CIA-30 bioclipse: jonalv * r7044 /bioclipse2/trunk/plugins/net.bioclip​se.scripting.ui/src/net/bioclipse/scr​ipting/ui/views/JsConsoleView.java: Set working directory for R when R starts
08:25 edrin joined #bioclipse
08:25 jonalv hi edrin
08:42 jonalv edrin: Do you remember where in the bc1 source tree your JavaScript examples can be found?
08:59 CIA-30 bioclipse: goglepox * r7045 /bioclipse2/trunk/plugins/ (2 files in 2 dirs): Added check to draw dots instead of atom symbols when isCompact is set
09:05 CIA-30 bioclipse: goglepox * r7046 /bioclipse2/trunk/plugins/net.bioclipse.cdk.u​i.sdfeditor/src/net/bioclipse/cdk/ui/sdfedito​r/editor/MultiPageMoleculesEditorPart.java: Changed tab names to 'Single 2D' and 'Single 3D'
09:27 CIA-30 bioclipse: goglepox * r7047 /bioclipse2/trunk/plugins/net.bioclipse.cdk.​jchempaint/src/net/bioclipse/cdk/jchempaint/ (3 files in 2 dirs): Dose a updateOnResize() when changing input. Fixes overly large symbols when switching to single2D tab in molecules editor.
09:45 shk3 joined #bioclipse
09:53 edrin hi jonalv, I don't know
09:53 jonalv edrin: oki
09:53 jonalv (Actually I already found em...)
09:54 jonalv :)
09:54 edrin jonalv: in any case I still have them
09:56 edrin jonalv: r u preparing the manuscript?
09:56 jonalv edrin: sry what manuscript?
09:56 jonalv I just wondered if you had any copyright information in them...
09:56 jonalv But you didn't
09:57 edrin you can add copyright info if you want
09:57 edrin on the other hand, why add?
09:58 jonalv no I was writing a JavaScript of my own and wanted to see how you did...
09:58 edrin ah ok
09:58 edrin what does it do?
10:00 jonalv creates molecules from smiles ans stores them in Structuredb and then performs a substructure search among them
10:02 CIA-30 bioclipse: jonalv * r7049 /bioclipse2/trunk/plugins/net.bioclipse.data.sa​mpledata/data/Javascripts/StructuredbScript.js: Added example JavaScript script using structuredb
10:03 edrin jonalv: it's cool, isn't it?
10:04 jonalv edrin: JavaScript is very cool yea :)
10:04 edrin you can do almost everything like with java
10:05 jonalv yea
10:53 thomas_ku joined #bioclipse
11:19 CIA-30 bioclipse: goglepox * r7050 /bioclipse2/trunk/plugins/net.bioclipse.core/src/​net/bioclipse/core/ResourcePathTransformer.java:
11:19 CIA-30 bioclipse: Added behavior for when a file already exist in Virtual.
11:19 CIA-30 bioclipse: It will try to create a unique name;
11:36 CIA-30 bioclipse: goglepox * r7051 /bioclipse2/trunk/plugins/ (6 files in 3 dirs): Made SMI-files expandable and extracted IMoleculesFromFile interface from MoleculesFromSDF and MoleculesFromSMI.
11:39 CIA-30 bioclipse: goglepox * r7052 /bioclipse2/trunk/plugins/net​.bioclipse.cdk.ui/plugin.xml: Enabled SMI-file expansion
12:44 CIA-30 bioclipse: goglepox * r7054 /bioclipse2/trunk/plugins/net.bioclipse.core/src/​net/bioclipse/core/ResourcePathTransformer.java: Fix for returning null when it should continue running
13:31 CIA-30 bioclipse: shk3 * r7055 /bioclipse2/trunk/plugins/net.bioclipse.cd​k.business/src/net/bioclipse/cdk/business/ (CDKManager.java ICDKManager.java): added code for 3d coordinate generation
13:35 CIA-30 bioclipse: shk3 * r7056 /bioclipse2/trunk/plugins/net.bioclipse.cdk.ui/ (2 files in 2 dirs):
13:39 CIA-30 bioclipse: jonalv * r7057 /bioclipse2/trunk/plugins/net.bioclipse.s​tructuredb/src/net/bioclipse/structuredb/ (Database.java business/StructuredbManager.java):
13:39 CIA-30 bioclipse: Fixed divide by 0 error but realized that the real problem is something I need to go back to the drawing board with.
13:39 CIA-30 bioclipse: Also fixed naming of a variable
13:40 CIA-30 bioclipse: goglepox * r7058 /bioclipse2/trunk/plugins/net.bioclipse.core/src/​net/bioclipse/core/ResourcePathTransformer.java: Fixed uri comparison by removing superfluous '/' in uri creation
13:54 egonw joined #bioclipse
14:20 masak joined #bioclipse
15:19 edrin egon is already in .se ?
15:22 edrin left #bioclipse
15:25 shk3 yes
15:27 masak @tell edrin re "egon is already in .se ?": yes
15:27 zarah Consider it noted.
15:31 CIA-30 bioclipse: jonalv * r7060 /bioclipse2/trunk/plugins/net.bioc​lipse.services/src/net/bioclipse/s​ervices/business/ServiceJob.java: refactured isModal method, optimized for sanity
15:34 masak` joined #bioclipse
16:22 CIA-30 bioclipse: shk3 * r7061 /bioclipse2/trunk/plugins/n​et.bioclipse.webservices/: I am adding the webservices plugin, since I need the axis libraries in nmrshiftdb plugin. Note that all code offering functions to users is not included in build.
16:28 CIA-30 bioclipse: shk3 * r7062 /bioclipse2/trunk/plugins/​net.bioclipse.webservices/ (107 files in 44 dirs): I am adding the webservices plugin, since I need the axis libraries in nmrshiftdb plugin. Note that all code offering functions to users is not included in build.
16:30 CIA-30 bioclipse: shk3 * r7063 /bioclipse2/trunk/plugins/​net.bioclipse.nmrshiftdb/: Initial import.
21:49 rojasm joined #bioclipse

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