Camelia, the Perl 6 bug

IRC log for #bioclipse, 2008-09-22

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All times shown according to UTC.

Time Nick Message
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09:19 shk3 hi all
09:19 zarah hi shk3
09:32 shk3 does anybody know about the concept of the virtual project in bc2?
09:32 shk3 can I expect a project called virtual to exist?
09:49 Gpox thats the idea, you should use net.bc.core.Activator.getVirtualProject() to get it
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10:15 shk3 Gpox: thanks
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12:11 olas hi
12:11 zarah hi olas
12:11 olas hi jonalv
12:11 * olas and jonalv is at Euro QSAR 2008
12:15 jonalv hi olas
12:36 jonalv shk3: I see you imported the services plugin from bc1. I guess we will have to adapt it to the new world order...
12:37 jonalv *weservices plugin
12:38 jonalv If you are only using the axis code perhaps we should make an axis pluign instead?
12:43 jonalv bbl
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13:42 jonalv hi
13:42 zarah hi jonalv
13:44 gilleain Does anyone know if there is an equivalent in bc2 to the compute plugin?
13:44 gilleain And if not, is it reasonable to port it over?
13:44 gilleain (I have looked, but I thought it might have changed name)
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14:32 jonalv gilleain: What does it do? :)
14:33 gilleain It depends the seneca plugin.
14:33 jonalv This sounds familiar...
14:33 jonalv go on
14:34 gilleain No, no it's not a wrapper.
14:37 gilleain Sigh. Why does the word "mish-mash" echo in my mind...
14:37 jonalv I don't know...
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14:46 * gilleain goes for a cup of tea
15:02 shk3 loader constraint violation: loader (instance of org/eclipse/osgi/internal/bas​eadaptor/DefaultClassLoader) previously initiated loading for a different type with name "org/xmlcml/cml/element/CMLMolecule"
15:02 shk3 could that be the problem with cml libraries we had before?
15:03 shk3 but my plugin does not depend on cdk10
15:08 jonalv I have not seen exactly that one before
15:10 shk3 hm, sounds like different versions of cmlmolecule exist
15:10 shk3 would be my interpretation
15:10 jonalv But I have switched jar file for jumbo now
15:10 jonalv that could be related...
15:11 jonalv probable is related...
15:11 shk3 i made sure the one in org.openscience.cdk is the same as net.bc.xml
15:11 shk3 net.bc.cml
15:11 shk3 any other place where a jumbo jar is in`?
15:11 gilleain it may or may not be relavant, but there's a mail on the cdk-devel list about the jumbo plugin from rajarshi.
15:12 gilleain (a mail from him, not a plugin from him)
15:13 shk3 hm, I am using trunk (not 1.2.x) for bioclipse
15:15 gilleain oh, right. not relevant then.
15:24 jonalv shk3: you switched my fixed version out? (my fixed version is renamed btw)
15:25 egonw shk3: I think the svn:externals for BC2 is pointing to CDK 1.2.x
15:25 shk3 you mean cdk 1.2.x
15:25 shk3 yes, it does
15:25 shk3 somehow
15:25 shk3 but i removed 1.2.x from my workspace
15:25 jonalv gilleain: Yea that mail is about the version switching I have been up to... :/
15:25 shk3 just trunk in there
15:26 gilleain ahh.
15:26 shk3 so it should use trunk, if it uses anything
15:29 jonalv hm shk3 are you or are you not using my "fixed" jumbo?
15:32 gilleain he's gone somewhere
15:33 shk3 the loo
15:33 shk3 i am using trunk
15:34 shk3 with jumbo 5.4.2-b2
15:35 jonalv ould you mind trying with the branch for me?
15:35 shk3 pardon?
15:35 shk3 ah, sorry
15:35 shk3 will do so
15:44 egonw shk3: yes, only yhe branch has the fix for the class loading problem
15:44 egonw until I manage to merge 1.2.x with trunk
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15:56 shk3 jonalv: same problem
15:57 shk3 cdk-1.2.x contains two jumbo jars (?).
15:57 shk3 Is this correct?
16:21 shk3 sorry, i have to leave
16:21 shk3 let's discuss this tomorrow
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