Camelia, the Perl 6 bug

IRC log for #bioclipse, 2008-10-13

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All times shown according to UTC.

Time Nick Message
07:07 Gpox joined #bioclipse
07:08 egonw joined #bioclipse
07:08 Gpox joined #bioclipse
07:19 rojasm joined #bioclipse
07:49 olas joined #bioclipse
07:51 olas moin
07:51 zarah hi olas
07:51 zarah olas: You have new messages. Write '@messages' to read them.
07:51 olas @msg
07:51 zarah olas: 2 d 15 h 45 m 41 s ago, masak said http://homepage.mac.com/typetrainer4mac/Menu1.html
07:52 egonw hi olas
07:52 olas egonw: you holding pres tomorrow?
07:52 olas GIT + what you've done before?
07:53 egonw only Git
07:53 egonw that's should be enough for one day...
07:53 egonw will do 'what I've done before' when Jarl is back?
07:53 olas 15 mins, right?
07:53 egonw that makes more sense I think
07:53 egonw yeah, something like that
07:53 olas sounds excellent
08:19 jonalv joined #bioclipse
08:22 jonalv hi
08:22 zarah hi jonalv
09:39 gilleain joined #bioclipse
09:43 egonw jonalv, Gpox: lunch in lunch room upstairs?
09:44 jonalv I don't thik Gpox is in Uppsala...
09:44 egonw ah, OK
09:44 jonalv And I don't have anything with me to eat...
09:44 egonw OK
09:44 jonalv also I am at the hospital
09:44 egonw :)
09:44 jonalv But I need to eat soemthing...
09:44 jonalv you have sandwhicehs?
09:45 egonw no
09:45 egonw left overs
09:45 jonalv k
09:46 egonw bbl
09:50 * olas is in sthlm with no food either
09:55 jonalv gah panic! I get a toally random classnotfoundexception in Brunn
09:55 jonalv For a class that I know is there and that has been there the whole time
09:55 olas press the red button
09:56 olas (panic button)
09:57 jonalv yea I donät have that one...
10:03 minunea_konsole joined #bioclipse
10:03 minunea_konsole left #bioclipse
10:05 jonalv olas: is the standard product updated to correspond to the bioclipse_feature?
10:11 egonw olas: quick update on the mozilla-listening... the event interface you showed does not give me access to Browser :(
10:46 CIA-30 bioclipse: gilleain * r7284 /bioclipse2/trunk/plugins/net.bioclipse.compute/: Initial import.
10:49 jonalv http://xkcd.com/488/
10:49 CIA-30 bioclipse: gilleain * r7285 /bioclipse2/trunk/plugins/net.bioclipse.seneca/: Initial import.
10:50 gilleain Yeah, but I buy on cd, then rip.
10:52 jonalv is that still legal?
10:52 egonw and then sell the cd?
10:52 egonw jonalv: in NL it would be legal
10:52 gilleain No, I toss the empty husk of a cd onto a dusty pile, after sucking out the rich digital core.
10:53 * egonw just listens to radio
10:54 jonalv last.fm
10:54 jonalv but that's probably illegal too
10:55 gilleain I applied for a job with them. Musical data mining.
10:55 * egonw had a nasty struggle with SWT stuff this weekend... writing a GitToDo RCP client :(
10:55 * jonalv has a nast struggle right now
10:55 egonw getting all sorts of ugly layout issues when combining a JFace TableViewer with regular SWT widgets...
10:55 jonalv Something has happened that maekks Brunn not work
10:55 jonalv I am afraid it might be in Bioclipse...
10:56 jonalv oh
10:56 jonalv gui layouts is complex...
10:56 gilleain For sure.
10:56 gilleain "Why won't you display!!?"
10:56 CIA-30 bioclipse: gilleain * r7286 /bioclipse2/trunk/plugins/net.bioclipse.compute/ (59 files in 16 dirs): Minimal-change port of the Bioclipse1 plugin as it was needed for the Seneca plugin.
10:58 jonalv I am not sure I love this minimal change ports of Bioclipse 1 stuff. I hope Biolicpse 2 doesn't became too large before I get some order to automagic job creations from annotation...
10:58 gilleain Huh. "Your message to Bioclipse-commit awaits moderator approval"
10:58 egonw olas: is there a list of things to do for the 2.0-RC2 release?
10:58 egonw gilleain: too large, I think
10:58 olas not really
10:58 egonw olas: which reminds me... please email me the bioclipse ML pwds, so that I can approve message too
10:58 jonalv egonw: We haven't even got RC1 out yet...
10:58 olas I've done that twice
10:59 egonw did you?
10:59 egonw mmm... the mines his email archive
10:59 gilleain jonalv: I know, I would prefer to improve things rather than just move them :(
10:59 gilleain But I needed compute.
10:59 olas we should compile a list towards bc2
10:59 olas but first we need to get rid of cdk10
10:59 olas which means new JCP is the most urgent
11:00 egonw OK
11:00 egonw that's the sort of list items I was tihnking about
11:00 jonalv For me the most urgent thing is to get Brunn running again... :(
11:01 charlgren joined #bioclipse
11:04 CIA-30 bioclipse: gilleain * r7287 /bioclipse2/trunk/plugins/net.bioclipse.seneca/ (86 files in 21 dirs): Most functionality recovered in a Bioclipse2 environment. Logging commented out.
11:04 jonalv what's javax.vecmath?
11:04 gilleain vector maths package
11:05 egonw originating from Java3d
11:05 gilleain Tuple2d, Tuple3d, Vector2d, etc.
11:05 egonw the one used by CDK is a public domain version implemented by some Japanese guy a long time ago
11:05 jonalv cool
11:05 gilleain Oh, the 12th Century package?
11:06 egonw much older, actually...
11:06 gilleain I hear it was written in calligraphy-Java.
11:06 egonw yeah, I had a hard time converting it to ASCII :)
11:06 jonalv I am trying to take a trip back in time to pree 150-cdk-plugins times with svn in order to figure out what causes Brunn to not work...
11:08 olas egonw: how do I locate 'make' on my computer?
11:08 olas use find?
11:08 olas how?
11:08 gilleain "locate make"
11:08 gilleain ?
11:08 egonw apt-get install make ?
11:08 olas egonw: do I look like I have ubuntu?
11:08 olas MAC for god's sake!
11:08 olas :-)
11:09 egonw :)
11:09 gilleain "port install make"
11:09 jonalv command-space write make?
11:09 egonw apple.com/?search=make
11:09 egonw or:
11:09 egonw google.com/?search=make&site:apple.com
11:09 zarah egonw: No hits.
11:09 olas I installed gcc
11:10 egonw google make site:apple.com
11:10 zarah egonw: http://www.apple.com/trailers/w​einstein/zackandmirimakeaporno/
11:10 egonw OMG
11:10 gilleain ha!
11:10 egonw of course... every discussion ends in either hitler or porn
11:10 gilleain I'm so not clicking on that link.
11:11 egonw google resource site:bioclipse.net
11:11 zarah egonw: http://wiki.bioclipse.net/index.php%3Ftitle%3DNew​_Resource_Scheme_%2526_BioResourceChangedListener
11:12 egonw mmm
11:12 egonw google IAtomContainer site:cheminfo.informatics.indiana.edu
11:12 zarah egonw: http://cheminfo.informatics.indiana.edu/​~rguha/code/java/nightly/api/org/opensci​ence/cdk/interfaces/IAtomContainer.html
11:12 egonw cool :)
11:12 egonw let me just repeat that over at #cdk
11:15 jonalv something has happened in Bioclipse between the 6:th of October and today which breakes Brunn!
11:15 jonalv What have you guys been up to?
11:16 egonw OK, lets'
11:16 egonw OK, let's talk about the test server tomorrow after my Git talk
11:17 jonalv egonw: sounds like a plan
11:23 Gpox joined #bioclipse
11:29 malick joined #bioclipse
11:38 jonalv -me is beginning to feel a bit hungry now..
11:38 olas @tell jonalv eat
11:38 zarah Consider it noted.
11:39 egonw what bank did I go to???
11:39 egonw I have to pay for every payment I make??
11:39 egonw is that normal??
11:40 egonw do they actually have people verify the payment??
11:41 jonalv egonw: sounds strange...
11:41 zarah jonalv: You have new messages. Write '@messages' to read them.
11:41 jonalv zarah: just tell me...
11:41 zarah jonalv: 2 m 18 s ago, olas said eat
11:41 jonalv olas: good point. I probably should eat something...
11:41 olas yup
11:41 jonalv I am pinpointing the exact commit that breaks brunn and it looks like my last commit from friday... =)
11:42 jonalv :/
11:45 egonw hahaha :)
11:45 egonw git has a bisect feature
11:45 egonw to track down regressions
11:45 egonw but I have no diea how that works yet
11:45 egonw idea
11:46 jonalv what would that do?
11:47 egonw olas: that's tomorrow, right? I'll be there too
11:47 * jonalv is gonna try to get somethign to eat now...
11:48 olas could we rechedule your talk to wednesday?
11:48 olas or earlier tuesday?
11:50 egonw 9:00 is not early enough?
11:51 olas ?
11:52 olas are you having your GIT pres at 09.00?
11:52 egonw yeah, not?
11:52 olas too early for me
11:52 egonw I assumed that
11:52 olas 09.15 is better
11:52 olas have you announced it?
11:52 olas email the uppsala bioclipse people
11:52 olas can masak attend then?
11:52 olas and jonalv?
11:53 olas better check with them first
11:54 olas egonw: no
11:55 olas yes, all
11:55 olas ack
11:55 olas no
11:56 olas :-)
11:56 olas must be fun for all to read this
11:56 edrin joined #bioclipse
11:56 edrin hi
11:56 zarah hi edrin
11:58 olas hi edrin
11:58 edrin hi olas
12:00 egonw olas: I did get one private msg
12:00 olas saying?
12:01 egonw that I have no idea why you put all other replies on this channel
12:05 shk3 joined #bioclipse
12:10 olas egonw: because I have forgotten my nick to freenode
12:11 olas or not my nic, my pwd
12:11 olas no idea how to get it back :-(
12:11 olas ideas?
12:13 egonw ah, ic
12:14 egonw ummm... contact people from freenode
12:14 egonw check www.freenode.net
12:16 olas no time
12:16 rojasm olas I had the same problem and I sent time ago a mail but not answer! But I now that if some body it is not using more of 1 month you can apply for the nick again
12:17 olas yes, read 60 days
12:19 egonw olas: http://ieeexplore.ieee.org/sear​ch/wrapper.jsp?arnumber=4620091
12:19 zarah egonw's link is also http://tinyurl.com/4u7kv9
12:19 egonw "
12:19 egonw Composing RESTful Services
12:19 egonw and Collaborative Workflows
12:19 egonw "
12:19 olas interesting
12:19 olas will read that
12:19 olas we have access?
12:20 olas can you send pdf?
12:20 egonw done
12:20 olas thx
12:25 olas shk3: http://wiki.bioclipse.net/index.php?t​itle=How_to_add_menus_and_actions#Add​_context_menu_for_a_certain_Context
12:25 zarah olas's link is also http://tinyurl.com/55gl83
12:27 shk3 ah
12:27 zarah shk3: You have new messages. Write '@messages' to read them.
12:27 shk3 thanks
12:27 shk3 @messages
12:27 zarah shk3: 3 h 15 m 26 s ago, egonw said Maybe jcp.sf.net can point to: http://apps.sourceforge.net/mediaw​iki/cdk/index.php?title=JChemPaint
12:42 CIA-30 bioclipse: jonalv * r7288 /bioclipse2/trunk/plugins/net.bioclipse.​usermanager/META-INF/spring/context.xml: Removed createJobadvice from usermanager. It created strange problems and wasn't really very thought through in that position anyway...
12:43 CIA-30 bioclipse: jonalv * r7289 /bioclipse2/trunk/plugins/net.bioclipse.tests/: Added bin to svn:ignore
13:00 olas jonalv: I REALLY need that wiki page describing how jobs in managers work
13:00 olas could you please write it asap?
13:00 jonalv olas: as of now they don't... :(
13:00 olas what!?
13:00 olas are you working on it?
13:01 jonalv or rather it's not finnisehed yet
13:01 jonalv I got Brunn running again so I guess I could spend the rest of the day on it...
13:01 jonalv we where working on that last friday you know...
13:02 jonalv we didin\t qiute finnish...
13:03 jonalv do you know some ui call that calls a manager method that should be run as a job_
13:03 jonalv ?
13:03 jonalv olas: Something to try on would be good...
13:03 jonalv And structuredb is sort of totally borken for the moment which was the only thing I had trying on before...
13:04 olas jonalv: please write the wiki page describing the functionality
13:04 olas title: how to run manager metchods in jobs
13:04 jonalv olas: I don't know if there is any functionality for the moment... :/
13:04 olas desired functionality?
13:05 olas annotate with @job?
13:05 jonalv yea I guess I could write up what I am aiming at
13:05 olas please explain what you want to achieve!
13:05 olas yes
13:05 jonalv you need to do something ?
13:05 olas please write the wiki page
13:05 jonalv you need it?
13:05 olas YES
13:05 olas I need to run a manager call in a job
13:05 jonalv great
13:06 jonalv then we can use that call as example
13:06 olas I can create my own job
13:06 jonalv or?
13:06 olas use any job call
13:06 olas I don�t mind
13:06 jonalv I know of none
13:06 olas you could add @job to a CDKManager method and test with that?
13:06 olas why would that not work?
13:07 jonalv they finnish so fast that you wouldn't see the job...
13:07 olas add a sleep()
13:07 olas really a lot easier than me explaining what I do right now
13:08 jonalv oh you have that complex stuff going on?
13:08 jonalv cool :)
13:08 olas always ;-)
13:08 jonalv okey I will look at cdk... :)
13:08 edrin jonalv, masak: did anyone have time to fix the scripting console formating bug?
13:08 jonalv not me...
13:09 jonalv it's not my field of Bioclipse exactly either
13:14 masak joined #bioclipse
13:15 edrin hi masak
13:15 masak hello edrin
13:16 edrin masak: did you have time to look in the console String formating bug?
13:16 masak edrin: sadly no. I don't have very many leads, and more clear-cut bugs got my attention first.
13:16 masak edrin: I haven't forgotten it, though.
13:37 edrin good
14:18 maclean joined #bioclipse
14:28 jonalv http://wiki.bioclipse.net/index.php?ti​tle=How_to_run_manager_methods_in_jobs
14:28 zarah jonalv's link is also http://tinyurl.com/3sc3vo
15:17 edrin olas: did you have time to think about  my mail?
15:23 jonalv shk3, maclean, olas + all the rest: Do anyone of you know a gui functionality in bioclipse 2 that calls a method on the cdk manager that I could annotate with @Job and try stuff on?
15:23 jonalv It seems that the editor opening doesn't call the mangaer...
15:25 maclean generate2dCoordinates?
15:26 jonalv I tried generate 3d coordinates but got a nullpointereception on a line that compared if something was == false
15:26 jonalv please don't write that so I can stumble upon it. such code hurts my eyes...
15:26 masak why do people keep comparing booleans to false?
15:27 masak it's not like there are very many possible boolean values...
15:27 maclean Er, so you mean "if (isFinished == false) {...}"?
15:27 maclean Instead of "if (!isFinished) {...}"
15:27 masak aye.
15:27 maclean Ow.
15:28 maclean And grrr.
15:28 masak besides, for that to generate a NullPointerException, isFinished would have to be something other than a primitive boolean.
15:28 masak I think it would have to be a Boolean.
15:28 jonalv I said it was on that row..
15:28 jonalv I didn't say the error had anything to do with that code
15:28 jonalv but that code hurt my eyes...
15:28 malick left #bioclipse
15:29 olas edrin: I read it
15:29 masak jonalv: it hurts the environment, and small cute kittens too
15:29 olas have not had time to think much
15:29 olas really not so experienced with those technologies
15:29 * olas likes small cute kittens
15:29 olas don't hurt them!
15:30 shk3 jonalv: can you send me the files where 3d generation gives you trouble?
15:30 jonalv /me++ //I actually got use of the Action history right now :)
15:30 maclean wow. "26 matches in the workspace" for "== false".
15:30 shk3 did you try 2d for manager
15:30 masak maclean: that's just sad.
15:30 masak olas: that's 26 kittens!
15:30 masak olas: would someone please think of the kittens!
15:31 edrin masak: do you use reflection to get Class' methods in the console?
15:31 masak edrin: no need.
15:31 masak rhino does that for us.
15:31 edrin why?
15:31 edrin i know
15:32 masak er, oh, we use a little reflection.
15:32 edrin but i mean the auto completion
15:32 masak aye, just a smidgeon.
15:32 masak very little.
15:32 masak practically none.
15:32 edrin that's what i meant
15:32 olas lol
15:32 jonalv shk3: did you write the create 2d/3d actions?
15:32 shk3 i must admit, yes, i did
15:33 masak :)
15:33 edrin masak: is this reflection already supported in a javascript editor?
15:33 masak brave man.
15:33 maclean Heh. "assertTrue(random == true || random == false);"
15:33 masak edrin: don't think so.
15:33 masak maclean: haha
15:33 masak actual code?
15:33 jonalv shk3: How come I can create 2d coordinates in a file and then create 2d coordinates again? Does it fail to create 2d coordinates silently and thus allows me to repeat that no op a zillion of times?
15:33 maclean In testRandomBoolean!
15:34 masak hahahaha
15:34 CIA-30 bioclipse: shk3 * r7290 /bioclipse2/trunk/plugins/net.bioclipse.s​pecmol/src/net/bioclipse/specmol/editor/ (AssignmentPage.java SpecMolEditor.java): avoids errors when the molecule does not have 2d coordinates
15:34 * maclean hates unit tests, I must admit.
15:34 masak what's a random boolean?
15:34 maclean A coin flip?
15:34 shk3 jonalv: it shouldn
15:34 shk3 't fail
15:35 masak I sure hope it doesn't!
15:35 shk3 it should ask if you want to create a new file or set coords in old file
15:35 jonalv so how come I can keep calling create 2d coordinates even though I have already created 2d coordinates?
15:35 shk3 if there are already 2d in old file and you write there, not much should change
15:35 shk3 yes
15:35 shk3 it well replace coords and therefore have no real effect
15:35 jonalv oh hang on
15:36 jonalv the action is always there? Regardless of wheter there actually are any 2d coordinates or not?
15:36 jonalv I don't like that
15:36 shk3 yes
15:36 shk3 you might want to do a cleanup
15:36 shk3 if you have bad coordinates
15:36 jonalv That's very counterintuituve. Totally fooled me
15:37 shk3 I found it obvious
15:37 jonalv shk3: you wrote it...
15:37 masak that usually helps.
15:37 jonalv shk3: off course you found it obvious you wrote it..
15:37 masak jonalv: you should try writing it, too! maybe it'll be clearer.
15:37 maclean But not always. I sometimes wonder what I was thinking when I wrote stuff...
15:38 jonalv may I suggest that we call the action recalculate 2d coordiantes if the molecule already ahve 2d coordiantes?
15:38 masak +1
15:38 jonalv so create if there are none and recalculate if there already are
15:39 shk3 jonalv: sounds good
15:39 shk3 will do this
15:40 jonalv good, ( and please, could you remove that == false check too? :)
15:41 masak think of the kittens!
15:41 edrin question: is bc2 thought to work with non sun java 1.5 runtimes ?
15:41 masak aye.
15:41 edrin for example ibm...
15:41 jonalv edrin: officially: no, if you ask me: why not?
15:41 masak I think it could, if it's not unreasonably difficult.
15:42 masak Java 1.5 should be Java 1.5, regardless of distributor
15:42 masak but getting it to actually work is another thing. let us know how that works out for you.
15:43 shk3 should be
15:43 shk3 != is
15:43 CIA-30 bioclipse: shk3 * r7291 /bioclipse2/trunk/plugins/net.bioclipse.c​dk.ui/src/net/bioclipse/cdk/ui/handlers/ (Create2dHandler.java Create3dHandler.java): saved the kittens
15:43 olas *phew*
15:43 jonalv shk3++
15:44 jonalv (saved kittens)++
15:44 masak let's all agree not to put the kittens in any more danger, shall we?
15:46 maclean Of course, some languages let you have "unless" :)
15:46 masak those are usually quite agreeable languages
15:46 masak though I must admit I don't use unless/until that often...
15:47 masak I prefer `if (! $cond)`
15:47 maclean I prefer "if not condition:", but hey.
15:47 CIA-30 bioclipse: shk3 * r7292 /bioclipse2/trunk/plugins/net​.bioclipse.cdk.ui/plugin.xml: menus now are called "(re)create {2|3}d"
15:48 masak maclean: that's fairly nice too.
15:48 masak and people are way too hung up on that indentation thing.
15:48 maclean true.
15:48 maclean although it can make copy/paste from emails tricky.
15:49 masak copy/paste from emails already is tricky :)
15:49 masak well, gotta go
15:49 jonalv masak: huh, did you just say that indentation isn't important?
15:50 masak jonalv: no. I mean that indentation policy is not enough reason for me to avoid a language
15:50 jonalv python?
15:50 maclean yup.
15:50 masak jonalv: you guessed it.
15:52 jonalv uhm did anyone happend to read me wiki post?
15:53 maclean I took a look.
15:53 jonalv Ijust realised that this return issue is important...
15:53 maclean What the "void methods only" policy?
15:53 jonalv well yea
15:54 jonalv but we can't really ahve only void methods..
15:54 jonalv so a solution must be found..
15:54 maclean "No shoes, no shirt, return type: no service!"
15:54 shk3 was wondering about the return type as well
15:55 jonalv I wonder if I can run a job in the gui thread ans still get progressmonitor updates...
15:55 jonalv perhaps this is the wrong way of doing things...
15:56 maclean I really have no idea. The closest to this I have come is filling a JTable with an anonymous Thread that wrapped a search.
15:56 maclean It made my head hurt.
15:56 jonalv good
15:57 jonalv uhm I mean then you realise why my head hurts
15:57 maclean Yes, yes I do.
15:57 maclean What do you really want the @Job to do?
15:57 jonalv maclean: exactly: I think taht is the question that I ahve to ask myswlf
15:57 maclean One plugin running another plugin's Manager methods?
15:58 jonalv It was something that I started using while working on structuredb and it actually worked quite well I thiugh. But right now it feels like there is something I have forgotten...
15:58 jonalv maclean: not really no
15:58 maclean Oh.
15:58 maclean What did it do for structuredb?
15:59 jonalv created a progressmonitor when importing things for example
16:00 maclean Huh, I see. How does this relate to org.eclipse.core.runtime.jobs.Job?
16:00 jonalv but that was a void method I think... :)
16:00 maclean Ah.
16:00 jonalv The problem is that you can't really return from a job
16:01 jonalv that sort of removes the point of havign a job in the first palce...
16:01 maclean It seems like this is some sort of parallelism.
16:02 maclean Multiple threads, blocking, and so on.
16:02 jonalv yea I guess you could say that
16:02 jonalv exactly
16:02 maclean So if you did want the return value, you would have to store it some place, and poll for the job's finish?
16:03 maclean (Er, I think)
16:03 jonalv well but you can't keep the gui thread doing polling either
16:04 maclean Oh.
16:04 jonalv the manager method should do everything and retur void
16:04 jonalv then it works
16:04 maclean So then only void methods?
16:05 maclean Seems to be the conclusion.
16:05 jonalv well all methods that can take time to execute should be void methods and have Job annotation yea
16:06 maclean I'm interested in this topic as I am looking at the seneca plugin which does a long running job, and produces various outputs.
16:06 maclean I guess they would ideally be written to file, and then maybe "tailed" in views.
16:06 maclean But I don't know yet.
16:07 jonalv yea this is true for jobs in general. You can't very well have the gui thread hanging around and waiting because that's equivalent to having the gui thread doing the job...
16:08 jonalv maclean: oh you can ahve the job updateing the views by putting update actions on the gui threads quese
16:08 jonalv queue
16:08 jonalv the Display.getDefault().asyncExec( you knoe
16:08 jonalv |know
16:08 maclean Hmmm. Interesting.
16:09 maclean I knoe.
16:09 maclean (well, I've seen that call before)
16:13 shk3 just saw that there is a net.bc.cdk.business.test folder in svn
16:13 shk3 right in trunk
16:13 shk3 not in plugins
16:13 shk3 is that intended?
16:23 edrin jonalv: because I am thinking about ways to compile and load code at runtime...
16:27 edrin olas: how did you bind your xml schema for your xws function?
16:27 olas not done that yet
16:27 olas problems converting between EMF and DOM
16:28 edrin emf is really a questionmark for me
16:28 edrin but the other xml binding libs are not very comfortable, too...
16:29 edrin for API tutorial docu XStream looks best, however it does not xls to class compilations...
16:32 jonalv edrin: sry I was away a bit. I am not sure I follow you though...
16:32 jonalv shk3: that sounds bad..
16:33 edrin jonalv: you asked why i want to know about the sun java runtime thing
16:33 jonalv edrin: ah yea okey
16:33 * jonalv has a headache today..
16:36 jonalv shk3: did you jsut rename the actions to recreate now?
16:36 jonalv &me feels that his point might have been lost...
16:36 * jonalv feels...
16:37 edrin olas: what are you doing at the moment?
16:37 olas lots of things
16:38 olas tomorrow I will look at xws again in Uppsala and try to get that server up
16:38 edrin fine :)
16:40 jonalv no it looks right :)
16:40 jonalv phew
16:40 jonalv :)
16:40 olas ok
16:40 olas edrin: ok
16:43 jonalv shk3: it's not quite working for me... :(
16:43 shk3 jonalv
16:43 shk3 just renamed
16:44 shk3 what's not working for you?
16:44 jonalv okey I copied 0037.cml from 2D structures into the cirtual project
16:44 jonalv |virtual
16:44 jonalv then I right clicked on it and choose create 3d coordinates
16:44 jonalv choose to shancge the file
16:45 jonalv it still says create 3d coordinates and when I try again things acts crazy and I ahve a java.lang.RuntimeException: Resetting to invalid mark
16:45 jonalv exception
16:50 rojasm joined #bioclipse
16:50 jonalv okey I am heading home now.
16:57 shk3 sorry
16:57 shk3 will have a look at this
17:01 shk3 cml is tricky
17:01 shk3 it can have both
17:01 shk3 might be this is the reason
17:01 shk3 but i will have a look
17:33 edrin ok, I am going home
17:33 edrin cu
17:33 edrin left #bioclipse
20:01 CIA-30 bioclipse: edrin_t * r7293 /bioclipse2/trunk/plugins/net.bioclipse.xws4j/ (4 files in 2 dirs): Added menu item to handle XWS management
20:23 CIA-30 bioclipse: edrin_t * r7294 /bioclipse2/trunk/plugins/net.bioclipse.xws4j/ (plugin.xml src/net/bioclipse/xws4j/XwsConsole.java): added support for "XMPP Console" in console menu
23:37 olass joined #bioclipse

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