Camelia, the Perl 6 bug

IRC log for #bioclipse, 2008-10-29

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Time Nick Message
05:52 thomas_ku joined #bioclipse
07:21 Gpox joined #bioclipse
08:08 egonw joined #bioclipse
08:10 Julio joined #bioclipse
08:11 Julio left #bioclipse
08:25 olass joined #bioclipse
08:30 egonw olass: since last nite a few bugs in CDK 1.2.x have been fixed, so would like to update the exported plugins for BC2
08:30 egonw per your approval
08:30 olass sure
08:31 olass export not done yet
08:31 egonw ok
08:39 olass egonw: '.' was not in bin.includes either
08:39 olass :-(
08:39 olass at least I found the problem
08:39 olass if you come here I'll show you build update site and some troubleshooting
08:39 olass egonw?
08:39 egonw ok... mmm... memories of ClassPath Horror ...
08:39 olass source.. = src
08:39 olass bin.includes = META-INF/,\
08:39 olass bin/,\
08:39 olass .
08:39 egonw mom...
08:44 egonw_ joined #bioclipse
08:58 edrin joined #bioclipse
08:58 edrin hi
08:58 zarah hi edrin
08:58 edrin olass: I think I fixed the ; issues with xws
08:59 CIA-52 bioclipse: egonw * r7502 /bioclipse2/trunk/cdk-externals/trunk/ (137 files in 90 dirs): Synched with CDK 1.2.x r12862
08:59 edrin if you checkout current xws plugin, it should work. although: u must update the location of target_dir again
08:59 edrin to /temp/xws or what you were choosing...
08:59 edrin (i would recommend the workspace for now ;)
08:59 edrin cu later
09:16 egonw__ joined #bioclipse
09:18 CIA-52 bioclipse: egonw * r7503 /bioclipse2/trunk/cdk-externals/trunk/org.​openscience.cdk.atomtype/src/org/openscien​ce/cdk/atomtype/SybylAtomTypeMatcher.java: Readded the starting slashes... really need to test that upstream...
09:18 CIA-52 bioclipse: egonw * r7504 /bioclipse2/trunk/cdk-externals/trunk/o​rg.openscience.cdk.reaction/src/org/ope​nscience/cdk/reaction/type/parameters/ (4 files): Added stuff which I forgot to add
09:23 CIA-52 bioclipse: egonw * r7505 /bioclipse2/trunk/cdk-externals/trunk/ (40 files in 40 dirs): Added missing trailing slash
09:25 shk3 joined #bioclipse
09:34 CIA-52 bioclipse: ospjuth * r7506 /bioclipse2/trunk/features/n​et.bioclipse.feature-patch/: Initial import.
09:36 CIA-52 bioclipse: ospjuth * r7507 /bioclipse2/trunk/features/n​et.bioclipse.feature-patch/ (.project build.properties feature.xml): A simple feature-patch. A20081028 version.
09:59 olass joined #bioclipse
10:07 shk3 hi olass
10:07 olass hi shk3
10:07 olass I just published the release
10:08 olass you may now depend on feature 20081028
10:08 olass or plugins 20081028
10:08 olass they are on bioclispe update site
10:08 olass let me know if you have problems
10:09 shk3 i will try
10:10 shk3 that's 2.0.0.A20081028, right?
10:10 olass you naturally will need 2 update sites, the bioclipse one and the speclipse one, in order to be able to "select required"
10:10 olass yes
10:10 olass ok, verified from update site as well
10:11 olass release done
10:11 olass I will now announce this on blog and ML
10:11 egonw good
10:11 egonw olass: I'll try to set up a Jmol Feature update site for people from jmol-devel to play with
10:11 egonw not this week, but while you're gone
10:12 olass egonw: a good thing to practive on
10:12 egonw yes, thought so too
10:12 egonw fairly simple one... just two plugins
10:12 egonw nothing can go wrong
10:12 egonw hahahaha
10:12 olass lol
10:12 olass Exporting can be a pain
10:12 olass but if you know what you're doing, it's not overly complicated
10:12 olass just time consuming
10:13 olass egonw: please tag bioclipse SVN for 20081028
10:13 olass asap
10:13 egonw ack
10:13 olass thx
10:14 egonw https://bioclipse.svn.sourceforge.net/svnroo​t/bioclipse/bioclipse2/tags/2.0.0.A20081028
10:15 egonw commit pending
10:16 CIA-52 bioclipse: egonw * r7508 /bioclipse2/tags/2.0.0.A20081028/: Tagged release 2.0.0.A20081028.
10:17 olass egonw: is the next JCP version 3?
10:18 shk3 i am getting
10:18 shk3 svn: '/svnroot/bioclipse/bioclipse2/trunk/fe​atures/net.bioclipse.speclipse-feature' path not found: 404 Not Found (https://bioclipse.svn.sourceforge.net)
10:18 shk3 when I try a commit.
10:18 olass no idea
10:18 shk3 is sf down?
10:18 olass 11:18 egonw committed...
10:19 olass (see above)
10:19 shk3 hm
10:20 egonw_ joined #bioclipse
10:23 shk3 hm, the path exists
10:24 shk3 when browsing svn
10:24 olass egonw: is there a wiki page for the JCP3 development?
10:24 egonw_ no, don't think so
10:24 olass shk3: is there a wiki page for the spectrum development and installation instructions?
10:24 egonw_ there is a LaunchPad tree
10:25 olass egonw_: I'd like to link to something in the release blog
10:25 shk3 there is the use case page etc.
10:25 olass shk3: I'd like to link to something in the release blog
10:25 olass shk3: url?
10:25 shk3 I will do one
10:25 olass ok
10:25 egonw_ olass: mom
10:25 shk3 trying to do the release right now
10:25 shk3 somehow svn is making trouble
10:25 egonw_ http://chem-bla-ics.blogspot.co​m/2008/10/chemical-editing.html
10:25 shk3 btw, should I check in the update site project
10:26 olass what has svn to do with a release?
10:26 zarah egonw_'s link is also http://tinyurl.com/5dvoeu
10:26 egonw_ olass: that page some some pointers
10:26 shk3 olass: not much, still would like to commit
10:27 olass egonw_: nah, that was not what I was after
10:27 shk3 so I am sending the update site to external services first
10:27 olass ok, will do without
10:27 olass it's not overly important
10:27 olass thought you had a wiki page with progress and development plan
10:28 olass http://bioclipse.blogspot.com/2008/10​/bioclipse-200a20081028-released.html
10:28 zarah olass's link is also http://tinyurl.com/5mqoqm
10:28 edrin olass: did you read my last message?
10:28 shk3 sorry, will work on it today
10:28 olass edrin: no
10:28 olass no worries
10:28 olass (was for egonw too :-))
10:28 edrin [09:58:22] <edrin> olass: I think I fixed the ; issues with xws
10:28 edrin [09:59:09] <edrin> if you checkout current xws plugin, it should work. although: u must update the location of target_dir again
10:28 edrin [09:59:26] <edrin> to /temp/xws or what you were choosing...
10:28 edrin [09:59:46] <edrin> (i would recommend the workspace for now ;)
10:29 olass great
10:29 olass will set it to the WS
10:29 olass will work on this after lunch
10:29 olass did you update xws4j-binding jar in net.bc.xws plugin too?
10:29 olass edrin?
10:30 edrin yes
10:30 edrin it's all up to date i think...
10:31 edrin and
10:31 edrin i added the eclipse compiler again because on my eclipse installation i could not get it with in the plugin
10:33 edrin btw, why is jonalv and masak not around here, anymore?
10:36 shk3 olass: should I check in the update site project?
10:36 olass why not?
10:36 olass sure
10:36 olass but only site.xml
10:36 olass the rest can be generated
10:36 olass the jars will just take up space
10:38 CIA-52 bioclipse: shk3 * r7509 /bioclipse2/trunk/features/net.biocl​ipse.speclipse_feature/feature.xml: fixed stuff in the feature
10:39 CIA-52 bioclipse: shk3 * r7510 /bioclipse2/trunk/net.biocl​ipse.speclipse-updatesite/: Initial import.
10:40 shk3 there is also an artifacts.xml and content.xml
10:40 shk3 are these generated as well?
10:41 shk3 looks like
10:41 CIA-52 bioclipse: shk3 * r7511 /bioclipse2/trunk/net.biocl​ipse.speclipse-updatesite/ (.project site.xml): Initial import.
10:48 shk3 just looked at the http://wiki.bioclipse.net/​index.php?title=Bioclipse2 page
10:48 zarah shk3's link is also http://tinyurl.com/6h4zlk
10:48 shk3 there is a section "Use cases for bc2"
10:49 shk3 but it does not contain or link to
10:49 shk3 http://wiki.bioclipse.net/index.php​?title=Use_Cases_for_Bioclipse_2.0
10:49 zarah shk3's link is also http://tinyurl.com/6ew7tl
10:49 shk3 should that be in there?
10:49 gilleain joined #bioclipse
10:50 edrin http://xkcd.com/494/
10:51 egonw_ shk3: please ping me when Speclipse Update is online...
10:51 egonw_ so that I can test it
10:51 shk3 will do so
10:52 olass egonw: could you tag CDK with a tag that we used in this release for bioclipse?
10:52 olass preferable 20081028...
10:52 egonw_ ok
10:52 olass let me know
10:53 shk3 olass: do we have pages on all features in the wiki?
10:53 olass no
10:53 olass but we should
10:53 shk3 where should the speclipse one be linked from?
10:53 olass release page?
10:53 olass we should update wiki
10:53 olass all plugins should also have pages
10:54 olass all in due time :-)
10:54 olass egonw: what is the tag name?
10:56 egonw_ lunch?
10:56 egonw_ I'm really hungry, and got a box
11:03 CIA-52 bioclipse: shk3 * r7512 /bioclipse2/trunk/net.biocl​ipse.speclipse-updatesite/: added stuff to svn ignore
11:18 * edrin is hungry, too. but have no food
11:28 CIA-52 bioclipse: shk3 * r7513 /bioclipse2/trunk/features/net.biocl​ipse.speclipse_feature/feature.xml: fixed stuff in the feature
11:33 shk3 I updated the bc2 page on the wiki with respect to use cases and added a section on features
11:33 shk3 feel free to add features and fill the pages
11:41 shk3 speclipse update site is at http://www.ebi.ac.uk/steinbeck/speclip​se/net.bioclipse.speclipse-updatesite/
11:41 zarah shk3's link is also http://tinyurl.com/6s9yvz
11:45 charlgren joined #bioclipse
11:49 gilleain errrr. In the CDKManager line 904:
11:49 gilleain "; // yes, setting null's here is important"
11:49 gilleain !!
11:49 gilleain Do not want.
11:51 egonw_ gilleain: huh?
11:52 gilleain The text in quotes is line 904.
11:53 gilleain And I get an error on line 865. about the org.o.cdk.atomtype.Activator.class
11:53 gilleain updating that plugin...
11:54 gilleain updating all cdk plugins :( ...
11:56 gilleain wow, this is a lot of changes.
11:58 gilleain oh good, now they are all borken.
12:01 egonw_ clean classpath?
12:01 gilleain probably. resolve conflicts first.
12:03 gilleain I think that it is mostly the manifest files.
12:04 gilleain hooray! success.
12:08 egonw_ good :)
12:10 gilleain oh btw, egonw : did stefan say that we visited Peter M-R and Jim Downing yesterday?
12:11 shk3 joined #bioclipse
12:16 egonw joined #bioclipse
12:18 egonw gilleain: umm, no
12:18 egonw how was it?
12:19 gilleain good. we talked about spectrum stuff, and about jcp a bit too.
12:20 gilleain but you should probably talk to them about the rendering stuff they are doing, so that I don't mis-translate the details.
12:20 egonw peter has shown me some nice things when we met in August
12:23 gilleain I mentioned that you had briefly (and not seriously) looked at wii-motes, and they talked of xboxes :)
12:23 egonw gilleain: found an easy to use java lib
12:23 egonw have not tried it yet...
12:23 egonw but will do so before the end of the year: make Jmol Wiimote-capable
12:24 gilleain Hmmm. Jmol, actually that would make some sense... (but only if you had nothing else to do! :)
12:24 egonw now I only have to wait until they add IR lights to laptop screens by default
12:24 egonw oh yes, it makes sense...
12:25 edrin wiimote capable!?
12:25 egonw yes :)
12:25 edrin so you can turn the molecule?
12:25 egonw fly through, actually
12:25 edrin oh
12:25 edrin wow
12:25 edrin hehe
12:25 egonw use the wiimote as helicopter control
12:25 egonw edrin: just in planning, for now :)
12:26 edrin but interesting
12:26 edrin the paper i am reading is interesting, too
12:26 olass edrin: did you add my RFE for adding jars to XWS classpath in the config file?
12:27 edrin olass: no, sorry, not added yet
12:27 olass ok
12:27 * olass wants to vote for that RFE
12:27 shk3 joined #bioclipse
12:28 egonw olass: talk in 15 mins about the WS presentation?
12:28 olass now or later
12:28 olass else I have 15 mins of nothing to do
12:28 gilleain oh, and egonw: they talked about a new CML version. There was a branch/merge diagram on the whiteboard.
12:28 egonw ok, excellent
12:28 edrin olass: just sent a mail to myself
12:28 * egonw makes a mentaol node he needs to work on the pom stuff...
12:29 egonw thomas_ku: I'd like you to test it too, at some point
12:29 edrin /regarding this thing
12:29 egonw olass: ok, now
12:29 olass ok
12:29 olass JArls office?
12:29 olass with whiteboard ans bigscreen?
12:30 olass let's fire up the wireless router there
12:30 egonw ok
12:30 egonw yes, let's do that
12:30 olass would be good anyways
12:30 egonw guys, bbl
12:30 * olass too
12:31 thomas_ku egonw: what to test?
12:39 egonw joined #bioclipse
12:40 egonw and we're back
12:40 thomas_ku [13:31:09] <thomas_ku> egonw: what to test?
12:40 egonw cdk pom files
12:40 egonw .pom files
12:41 egonw will likely have those next week
12:41 thomas_ku ok good to know
12:48 edrin egon, this was fast, how could you did this?
12:56 egonw edrin: can we invoke soap services in bc2?
12:56 egonw if so, do you have a demo js script?
12:57 edrin egonw: i dont think there is a plugin with this feature yet
13:00 edrin why? you are planing a special web service feature?
13:18 gilleain joined #bioclipse
13:25 edrin egonw: sorry, this is not fully correct, i think shk2 ported the web service plugin from bc1. however it seems the EBI SOAP WSDL has changed again.
13:25 edrin Have to adapt it again
13:25 edrin beside this the axis lib in the plugin is an old one, maybe it's possible to switch to a newer one.
13:27 edrin so far it was not supporting SOAP in general to the bc2., just supporting Sequence requests to database of NHI or EBI
14:01 egonw joined #bioclipse
14:15 edrin egon?
14:31 egonw yes?
14:32 egonw I'm going to write a coffee machine now
14:33 egonw edrin: ola and I were exploring what to see in next weeks Embrace meeting
14:33 egonw so, no SOAP
14:33 egonw so, no SOAP/Bioclipse
14:34 edrin egonw: so, no SOAP? what exactly do you mean?
14:34 egonw no SOAP/Bioclipse in the presentation
14:35 edrin ah
14:35 edrin u will give a presentation? or ola?
14:35 egonw I will
14:35 egonw ola will be scubba diving :)
14:36 edrin ah :)
14:52 edrin egonw: you are going to write a coffee machine now again?
14:52 egonw yes
14:53 egonw just checking out xws from SVN
14:53 egonw whcih is done now
14:54 edrin ah :)
14:54 olass joined #bioclipse
14:54 olass edrin: I have now put my service online at ws1
14:55 olass it's run on teh server as well, and will continue that
14:55 olass so feel free to try it out
14:55 edrin ah cool
14:55 olass will try it from bioclipse jsconsole now
14:55 edrin :)
14:56 olass edrin: do you happen to know how I can use it while logged into jabber.org?
14:56 edrin no clue
14:56 olass oh
14:56 olass seems I can now :-)
14:56 edrin no i cannot
14:56 olass hmm, maybe not
14:57 edrin but u have your other jabber account set up
14:57 edrin in bc 2
14:57 olass sure
14:57 olass but want to solve it
14:57 olass works for ayena
14:57 olass not for ws1
14:57 edrin from @ws1.bmc.uu.se it works
14:57 olass yes
14:58 edrin in a small conference now,ll be back later
14:58 olass ok
15:13 egonw edrin: ping
15:13 egonw ok
15:13 egonw :(
15:20 olass edrin: we now connect two components to xws.ws1.bmc.uu.se
15:20 olass that does not work
15:20 olass how do we achieve that?
15:21 olass can we have multiple components to the same xws.ws1.bmc.uu.se?
15:22 olass and is the xws.ws1.bmc.uu.se really a service, or is it the point for hooking in XWS services into ejabberd?
15:23 olass I am afraid I need to manualle add things in ejabberd config each time I want to connect a different component
15:23 olass is that so?
15:24 olass edrin: ping me when you get back
15:29 egonw [16:28] <CIA-36> cdk: egonw * r12873 /cdk-xws/ (. branches/ tags/ trunk/): Added place to store source code for XWS webservices for the CDK
16:02 edrin back
16:05 edrin hm...
16:06 edrin maybe it is a problem to load multiple .jar(s) in parallel that all have the same package.Functions class where the component tries to load the stuff...
16:06 edrin maybe the loading code is not good
16:06 edrin [16:22:12] <olass> and is the xws.ws1.bmc.uu.se really a service, or is it the point for hooking in XWS services into ejabberd? <- this i do not understand
16:07 olass egonw is testing
16:07 edrin but in general as soon as ejabberd was once set up to accept con from the xws you need no update of ejabberd conf anymore
16:08 edrin huh?
16:08 olass hmm, then there's something wrong
16:08 edrin what did he do?
16:08 olass egonw is NOT testing
16:08 olass he was talking right out in the air about what he was doing
16:08 egonw I was testing xws-cdk-services
16:08 olass (dunno why)
16:08 olass so, how do we resolve this, edrin?
16:08 egonw which has a net.bioclipse.xws.component.function.Functions
16:09 egonw I actually had a different java pkg first
16:09 egonw but then it complained
16:09 edrin egonw: is it working solely alone, without HIV thing?
16:09 egonw no idea
16:09 egonw with PSI we see both
16:09 egonw show up
16:09 edrin can you try?
16:09 egonw sure
16:09 edrin oh
16:09 egonw shall I boot my service?
16:09 edrin yes, please
16:10 egonw ok, booted
16:11 edrin olass, egon, only one instance of component can run at once. it must load all .jar, seprarte the .jar file path in cfg with; i think...
16:11 egonw edrin: right
16:11 edrin ok
16:11 egonw that's we found out too...
16:11 egonw so, how do we get *two* components?
16:11 egonw [17:11] <CIA-36> cdk: egonw * r12875 /cdk-xws/trunk/xws-cdk-services/ (21 files in 13 dirs): Architecture for XMPP/IO-DATA-based webserservices
16:12 edrin ah? sure, to have two components you will have to config another component jid and con component port in ejabberd2
16:12 edrin for example cdk.ws1.bmc.uu.se
16:13 edrin but
16:13 egonw ah, we tried that
16:14 egonw I had this:
16:14 egonw in coffee.cfg:
16:14 egonw COMPONENT_JID=coffee.ws1.bmc.uu.se
16:14 olass but the ejabberd server config states xws.ws1.bmc.uu.se
16:14 egonw because that indeed sounded logical
16:14 egonw (to me)
16:14 edrin oh
16:14 edrin nono
16:14 olass nono?
16:14 olass nono to who?
16:15 olass me?
16:15 olass egonw?
16:15 edrin the component_jid must be the same in ejabberd as in component cfg...
16:15 olass right
16:15 edrin component_jid is linked to port and key
16:15 olass does that mean only one component?
16:15 egonw so, we must run one ejabberd per component?
16:15 edrin no
16:15 egonw so two components -> two ejabberds?
16:15 olass no to who?
16:15 edrin you just have to add another component config line...
16:16 olass right, which means you have to edit ejabberd.cfg
16:16 egonw looking like?
16:16 egonw and to which file?
16:16 olass [17:10] < edrin> but in general as soon as ejabberd was once set up to accept con from the xws you need no update of ejabberd conf anymore
16:16 olass so the above is not true?
16:16 edrin like:
16:16 edrin xws.ws1.uu.se port 5555 key secret1
16:16 edrin cdk.ws1.uu.se port 2433 key secret2
16:17 CIA-52 bioclipse: shk3 * r7514 /bioclipse2/trunk/plugins/net.bioclipse.nmrs​hiftdb/src/net/bioclipse/nmrshiftdb/wizards/ (6 files): added window titles
16:17 olass so an entry in the ejabberd.cfg is only for one component
16:17 olass which means, if we have 100 components, 100 ports on the server to open
16:18 olass must it really be this way?
16:18 edrin olass: well, as long as you want diverse functions (multiple function .jars) to be hosted by the single xws.ws1.uu.se
16:18 CIA-52 bioclipse: shk3 * r7515 /bioclipse2/trunk/plugins/net.biocli​pse.spectrum/src/net/bioclipse/spect​rum/wizards/NewSpectrumWizard.java: added window titles
16:18 olass so the xws in xws.ws1... is a component = a service
16:18 edrin yes
16:18 edrin and the service can provide multiple functions
16:19 olass mine should be called hivpred.ws1.bmc.uu.se then
16:19 egonw yes
16:19 olass and I should set up cdk.ws1.bmc.uu.se
16:19 egonw please do
16:19 olass and open more ports in the firewall
16:19 edrin you can add more and more functions to the component by adding more and more .jar to the component cfg - at least this was the plan
16:19 olass which I can't
16:19 olass edrin: but still, the functions are only for a service
16:20 olass you can't group different functions in same service
16:20 olass hivpred might have 5 functions
16:20 edrin i agree
16:20 CIA-52 bioclipse: shk3 * r7516 /bioclipse2/trunk/plugins/net.bioclipse.s​pecmol/src/net/bioclipse/specmol/wizards/ (4 files): added window titles
16:20 olass it's like hivpred -> brew coffee doesn't make sense
16:20 edrin in this case i would recommend multiple components, indeed
16:20 olass one component, one logical piece of service with multiple functions
16:20 olass on teh other hand
16:21 edrin it's a question of stability, too. would be good to still have new coffee if you reboot service HIV
16:21 egonw edrin: theoretically, can a service not be an account which would log in, like a client would?
16:21 edrin egonw: yes
16:21 edrin would be possible, too. but why?
16:21 egonw because then we would not have to care about making firewall holes
16:22 edrin is it a firewall hole?
16:22 edrin well
16:22 olass we need a firewall hole in order to run a component to the server
16:22 edrin you can run the component locally...
16:22 egonw [17:19] <olass> and open more ports in the firewall
16:22 olass we are talking deployment now
16:22 olass on a live server
16:22 edrin you can restrict the access to certain IPs
16:23 edrin MAC addresses
16:23 edrin a socket itself is not always bad :/
16:24 edrin and adding new components: i think most jabber servers allow configuration at runtime, too...
16:24 edrin are you aware that ejabberd has a http config site for example?
16:24 olass how do you make ejabberd re-read the config file at runtime?
16:24 olass no?
16:24 olass what is it?
16:25 olass please explain
16:25 edrin something like the cups http config at runtime...
16:25 edrin it is uggly and i never understood how to use it
16:25 olass please elaborate
16:25 edrin :)
16:25 olass ok
16:25 olass how reread condfig file at runtime then in ejabberd?
16:25 olass edrin?
16:27 edrin olass: it looks like this: http://www.ejabberd.im/files/e​files/mod_statsdx_node_yes.png
16:27 zarah edrin's link is also http://tinyurl.com/5zte6l
16:27 edrin you can access it via http://ws1.bmc.uu.se at some obscure port i forgot...
16:28 edrin and it must be activated in ejabberd cfg
16:28 edrin and
16:28 olass [17:28] < olass> how reread condfig file at runtime then in ejabberd?
16:28 edrin beside this you can also control ejabberd at runtime with PSI
16:29 edrin by service discovery and ad hoc commands the ws1.bmc.uu.se but only adminstraro can use/see these commands
16:29 edrin olass: ejabberd config is really complicated
16:29 edrin i am not much into it
16:29 olass you have never restarted ejabberd?
16:29 edrin we have a seminar now, i will be back in ~1 h, sorry
16:29 olass ok
16:29 olass cu tomorrow then
16:30 edrin olass: i just know that config is possible at runtime, too. but i tink stuff is saved differently...
16:30 edrin please read ejabberd manual. i cannot help you much here
16:30 edrin and if it is too complicated you can also try other jabber daemons
16:30 edrin cu later
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16:56 olass edrin: we now have 2 services (=components) running
16:56 olass we can deploy inside firewall
17:01 olass edrin: still no luck with binding
17:01 olass http://paste2.org/p/93985
17:01 olass please try binding at home for the service
17:01 olass hivpred.ws1.bmc.uu.se at port 8764
17:02 olass (hmm, port does not seem to be needed in client, right?)
17:10 olass where should I set the refreshWorkspace() thingy?
17:10 olass edrin?
17:11 olass @tell edrin: need I need a pointer to where workspac eshould be refreshed
17:11 zarah Consider it noted.
17:11 CIA-52 bioclipse: ospjuth * r7517 /bioclipse2/trunk/plugins/net.bioclipse.xws4j/ (3 files in 3 dirs): Now uses workspace for created bindings, creates a project 'XWS'. Manual refresh so far, need pointer where project should be refreshed.
17:17 olass edrin: let me know by email
17:17 olass bye all
18:13 edrin left #bioclipse
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21:00 edrin joined #bioclipse
22:30 CIA-52 bioclipse: edrin_t * r7518 /bioclipse2/trunk/plugins/net.bioclipse.xws4j/ (6 files in 4 dirs): updated binding lib; cleaned code
22:31 CIA-52 bioclipse: edrin_t * r7519 /xws/trunk/xws4j-binding/src/net/bioclipse​/xws/binding/tools/IoFactoryBuilder.java: fixed obvious errors
22:49 CIA-52 bioclipse: edrin_t * r7520 /bioclipse2/trunk/plugins/net.biocl​ipse.xws4j/src/net/bioclipse/xws4j/ (DefaultBindingDefinitions.java business/XwsManager.java): added update resource in explorer

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