| Time |
S |
Nick |
Message |
| 06:53 |
|
|
Gpox joined #bioclipse |
| 06:54 |
|
|
masak joined #bioclipse |
| 07:24 |
|
|
Gpox joined #bioclipse |
| 08:09 |
|
|
egonw joined #bioclipse |
| 08:31 |
|
egonw |
moin |
| 08:31 |
|
zarah |
hi egonw |
| 08:32 |
|
masak |
y0 |
| 08:32 |
|
zarah |
hi masak |
| 08:32 |
|
masak |
zarah: you don't need to salute everone, you know. |
| 08:32 |
|
zarah |
masak: are you making fun of me? |
| 08:32 |
|
masak |
zarah: a little. |
| 08:32 |
|
zarah |
masak: please rephrase or stop trying to be witty :) |
| 08:33 |
|
egonw |
so your commit about bug #12 |
| 08:33 |
|
masak |
ok :) |
| 08:35 |
|
masak |
egonw: well, I added bug-to-URL capabilities to Smart Girl, as you suggested. but currently, it recognizes only the exact format 'bug NN' -- I should probably add '#' to that. also, it only triggers on commit bot utterances. |
| 08:35 |
|
masak |
maybe that's too restrictive? |
| 08:35 |
|
masak |
I don't want zarah to blabber, is all. |
| 08:36 |
|
egonw |
no, happy with it to only react on CIA-53 |
| 08:36 |
|
egonw |
CIA-bla |
| 08:36 |
|
masak |
goodie. |
| 08:36 |
|
egonw |
yes, the hash would be good |
| 08:37 |
|
CIA-53 |
bioclipse: carl_masak * r7614 /bot/trunk/zarah.pl: [zarah] now also accepts "bug #NN" |
| 08:37 |
|
egonw |
so your commit about bug #12 |
| 08:37 |
|
egonw |
crap |
| 08:37 |
|
egonw |
zarah: reboot |
| 08:37 |
|
egonw |
zarah: die |
| 08:37 |
|
masak |
zarah: reboot |
| 08:38 |
|
|
zarah joined #bioclipse |
| 08:38 |
|
egonw |
saw your commit about bug #12 |
| 08:38 |
|
egonw |
ok... |
| 08:38 |
|
masak |
egonw: but if you expect a response to that, |
| 08:38 |
|
egonw |
oh right |
| 08:38 |
|
egonw |
ok, ok |
| 08:38 |
|
egonw |
the does it... |
| 08:38 |
|
masak |
I don't think you understood what I said about zarah only responding to CIA-NN |
| 08:39 |
|
egonw |
I have officially a *very* *bad* day |
| 08:39 |
|
masak |
egonw: sorry to hear that. |
| 08:39 |
|
egonw |
no, just short term memory issues |
| 08:40 |
|
masak |
egonw: but do feel free to throw in some "bug #12"-like things in commit comments :) |
| 08:41 |
|
egonw |
yes, working on that |
| 08:44 |
|
masak |
http://nopaste.snit.ch/14545 |
| 08:44 |
|
stain |
imagine.. bug #12! |
| 08:45 |
|
masak |
no matter how many times you try, she still won't listen :) |
| 08:45 |
|
stain |
either you're spoilt having very few bugs, or you have pulled up some good old dusty stuff |
| 08:45 |
|
masak |
stain: we just reset our bug db |
| 08:45 |
|
egonw |
stain: no, we just switched to bugzilla |
| 08:45 |
|
stain |
"Look, we have no bugs!" |
| 08:45 |
|
egonw |
and did not copy all old bugs |
| 08:45 |
|
stain |
you switched *to* bugzilla? :) |
| 08:45 |
|
egonw |
yes |
| 08:45 |
|
egonw |
from SourceForge |
| 08:45 |
|
masak |
stain: :) |
| 08:45 |
|
stain |
well, ok! |
| 08:45 |
|
stain |
then I understand ;) |
| 08:46 |
|
masak |
stain: there are degrees in hell. |
| 08:46 |
|
egonw |
Eclipse Mylyn integration is great |
| 08:46 |
|
stain |
I just love Jira.. I can't go back |
| 08:46 |
|
egonw |
masak: celsius? |
| 08:46 |
|
* masak |
looks up Jira |
| 08:46 |
|
masak |
egonw: must be Farenheit, no? |
| 08:46 |
|
egonw |
opensource? ubuntu package? |
| 08:46 |
|
stain |
http://www.mygrid.org.uk/dev/i[…]sorter/order=DESC |
| 08:46 |
|
zarah |
stain's link is also http://tinyurl.com/6z8yku |
| 08:47 |
|
masak |
http://www.atlassian.com/software/jira/ |
| 08:47 |
|
zarah |
masak's link is also http://tinyurl.com/7bd56 |
| 08:47 |
|
* masak |
kinda likes RT, too. |
| 08:47 |
|
masak |
email integration is great. |
| 08:47 |
|
stain |
emails would be to disruptive for me.. I filter away the emails from Jira ;) |
| 08:48 |
|
stain |
RT is all right, isn't it.. but more for support, right? |
| 08:49 |
|
masak |
stain: not at all. |
| 08:49 |
|
masak |
stain: definitely for bugs and feature requests. |
| 08:50 |
|
masak |
http://bestpractical.com/rt/ |
| 09:01 |
|
|
jonalv joined #bioclipse |
| 09:02 |
|
jonalv |
hi |
| 09:02 |
|
zarah |
hi jonalv |
| 09:02 |
|
zarah |
jonalv: You have new messages. Write '@messages' to read them. |
| 09:02 |
|
jonalv |
@messages |
| 09:02 |
|
zarah |
jonalv: 1 h 37 m 49 s ago, masak said http://chem-bla-ics.blogspot.c[…]sts-in-blogs.html |
| 09:04 |
|
masak |
hi jonalv |
| 09:04 |
|
jonalv |
masak: hi |
| 09:22 |
|
CIA-53 |
bioclipse: carl_masak * r7615 /bot/trunk/zarah.pl: [zarah] now treats "me", "me.", "me.." etc identically in "tell me..." |
| 09:36 |
|
CIA-53 |
bioclipse: carl_masak * r7616 /bot/trunk/zarah.pl: [zarah] refactoring of @tell, @ask and @ping. these now work the same way |
| 09:37 |
|
|
zarah joined #bioclipse |
| 09:37 |
|
|
zarah joined #bioclipse |
| 09:38 |
|
CIA-53 |
bioclipse: carl_masak * r7617 /bot/trunk/zarah.pl: [zarah] fixed typo |
| 09:38 |
|
|
zarah joined #bioclipse |
| 09:40 |
|
|
jonalv joined #bioclipse |
| 09:43 |
|
|
charlgren joined #bioclipse |
| 09:51 |
|
jonalv |
egonw: I have problems with non compiling IJChemPaintManager... :( |
| 09:59 |
|
jonalv |
egonw: ping |
| 10:06 |
|
egonw |
pong |
| 10:06 |
|
egonw |
was in a meeting |
| 10:06 |
|
jonalv |
okey |
| 10:07 |
|
jonalv |
egonw: but what's up with IJCempaintManager? |
| 10:08 |
|
jonalv |
it seems to have made it's way into the central parts of Bioclipse dependencies + it doesn't compile... |
| 10:08 |
|
egonw |
mom |
| 10:09 |
|
egonw |
no, should not be a central dep at all... |
| 10:09 |
|
egonw |
where did you find that dep... I need to fix that then |
| 10:09 |
|
egonw |
no idea where that came from... :( |
| 10:10 |
|
jonalv |
I haven't followed it up but it got it'sef into my default set of plugins... |
| 10:24 |
|
jonalv |
zarah: tell masak Did you even try your last console hack on your computer before commiting? Now tab completions i borken on mac's too... :( |
| 10:24 |
|
zarah |
Consider it noted. |
| 10:25 |
|
CIA-53 |
bioclipse: egonw * r7618 /bioclipse2/trunk/plugins/net.bioclipse.core.tests/src/net/bioclipse/core/tests/AbstractManagerTest.java: Refactored out general methods |
| 10:44 |
|
egonw |
jonalv: can reproduce the compile problem |
| 10:44 |
|
egonw |
jonalv: but I cannot reproduce any core plugin to depend on IJChemPaintManager |
| 10:45 |
|
jonalv |
egonw: uhm perhaps it wasn't a core plugin. is it in the chemoinformatics fetarue? |
| 10:46 |
|
egonw |
yes |
| 10:47 |
|
jonalv |
that's probably what I did then |
| 10:48 |
|
jonalv |
anyway, you are fixing the compile problem I trust? :) |
| 10:48 |
|
* jonalv |
-> lunch |
| 10:48 |
|
egonw |
yes |
| 10:48 |
|
egonw |
commit pending |
| 10:49 |
|
CIA-53 |
bioclipse: egonw * r7619 /bioclipse2/trunk/plugins/net.bioclipse.cdk.jchempaint.business/src/net/bioclipse/cdk/jchempaint/business/IJChemPaintManager.java: Fixed for class name change; Eclipse must have overlooked that when I had it rename the class |
| 12:03 |
|
|
jonalv joined #bioclipse |
| 12:10 |
|
|
malick joined #bioclipse |
| 12:25 |
|
egonw |
jonalv: ping |
| 12:26 |
|
jonalv |
egonw: pong |
| 12:26 |
|
egonw |
is there a IBioclipseManager.getImplementedInterface() |
| 12:26 |
|
egonw |
that would return ICDKManager.class for CDKManager? |
| 12:26 |
|
egonw |
that would be damn useful |
| 12:26 |
|
jonalv |
I don't know |
| 12:26 |
|
egonw |
now I need to rely on class name conventions |
| 12:27 |
|
jonalv |
hm |
| 12:27 |
|
jonalv |
perhaps add one? |
| 12:27 |
|
egonw |
which is fine, but just not convenient |
| 12:27 |
|
egonw |
yeah, might do |
| 12:31 |
|
|
edrin joined #bioclipse |
| 12:41 |
|
egonw |
jonalv: ping |
| 12:42 |
|
jonalv |
egonw: pong :) |
| 12:42 |
|
egonw |
:) |
| 12:42 |
|
egonw |
what was that third parameter, IRunnable? |
| 12:42 |
|
jonalv |
ah yea |
| 12:42 |
|
egonw |
mmm... |
| 12:42 |
|
egonw |
where do I find that? |
| 12:42 |
|
egonw |
which plugin? |
| 12:42 |
|
jonalv |
We want to add a possibility to run code usign the gui thread after the job has finnisehd |
| 12:43 |
|
egonw |
yes, I know |
| 12:43 |
|
jonalv |
For updating... |
| 12:43 |
|
egonw |
but cannot find IRunnable |
| 12:43 |
|
jonalv |
oh |
| 12:43 |
|
jonalv |
hang on |
| 12:44 |
|
jonalv |
that should be java.lang.Runnable |
| 12:44 |
|
jonalv |
not IRunnable |
| 12:44 |
|
egonw |
ah, ok |
| 12:44 |
|
egonw |
good |
| 12:46 |
|
egonw |
zarah: here comes |
| 12:46 |
|
zarah |
egonw: excuse me? |
| 12:47 |
|
egonw |
zarah: well, do your thing |
| 12:47 |
|
zarah |
egonw: please rephrase or stop trying to be witty :) |
| 12:47 |
|
egonw |
CIA-53: you too, please |
| 12:48 |
|
CIA-53 |
bioclipse: egonw * r7620 /bioclipse2/trunk/plugins/net.bioclipse.core.tests/src/net/bioclipse/core/tests/AbstractManagerTest.java: Added second API test for managers (addresses bug #112) |
| 12:48 |
|
zarah |
http://pele.farmbio.uu.se/cgi-[…]ow_bug.cgi?id=112 |
| 12:48 |
|
egonw |
zarah: tack |
| 12:48 |
|
zarah |
you're welcome, egonw :) |
| 12:55 |
|
CIA-53 |
bioclipse: egonw * r7621 /bioclipse2/trunk/plugins/net.bioclipse.core.tests/src/net/bioclipse/core/tests/AbstractManagerTest.java: Fixed gettting names of classes: don't getClass on a Class |
| 12:59 |
|
CIA-53 |
bioclipse: egonw * r7622 /bioclipse2/trunk/plugins/net.bioclipse.cdk.business/src/net/bioclipse/cdk/business/CDKManagerHelper.java: Removed output to STDOUT |
| 13:00 |
|
CIA-53 |
bioclipse: egonw * r7623 /bioclipse2/trunk/plugins/net.bioclipse.core.tests/src/net/bioclipse/core/tests/AbstractManagerTest.java: Removed output to STDOUT |
| 13:03 |
|
jonalv |
zarah: pelezilla |
| 13:03 |
|
zarah |
[Bug 77] paths in windows slash problems http://tinyurl.com/578aen |
| 13:03 |
|
zarah |
[Bug 78] CR/LF problems on windows http://tinyurl.com/6eznsa |
| 13:03 |
|
zarah |
[Bug 70] Faulty instanceof as IMolecu... http://tinyurl.com/5u7vag |
| 13:03 |
|
zarah |
[Bug 73] Bioclipse 2.0.0 final is not... http://tinyurl.com/6phlff |
| 13:03 |
|
zarah |
[Bug 113] The js console says "unexpe... http://tinyurl.com/5hey86 |
| 13:03 |
|
zarah |
Entire list at http://tinyurl.com/59wwod |
| 13:04 |
|
egonw |
@pelezilla cheminformatics |
| 13:04 |
|
zarah |
[Bug 17] Chemoinformatics is so 90-ti... http://tinyurl.com/66wrxc |
| 13:04 |
|
zarah |
[Bug 49] Cheminformatics icons http://tinyurl.com/5prvut |
| 13:04 |
|
zarah |
[Bug 56] Set up feature for CDK-Debug http://tinyurl.com/6e28yk |
| 13:04 |
|
zarah |
Entire list at http://tinyurl.com/5wucw4 |
| 13:05 |
|
egonw |
@pelezilla egonw |
| 13:05 |
|
zarah |
[Bug 90] missing unit test for saveCM... http://tinyurl.com/6l8aeo |
| 13:05 |
|
zarah |
[Bug 91] missing unit test for saveMD... http://tinyurl.com/6saofw |
| 13:05 |
|
zarah |
[Bug 94] missing unit test for create... http://tinyurl.com/674rgn |
| 13:05 |
|
zarah |
[Bug 106] missing manager unit test f... http://tinyurl.com/5s4wyd |
| 13:05 |
|
zarah |
[Bug 29] Backups as Git on server http://tinyurl.com/6rcqk8 |
| 13:05 |
|
zarah |
Entire list at http://tinyurl.com/5kjqxt |
| 13:06 |
|
egonw |
@pelezilla #117 |
| 13:07 |
|
zarah |
Cannot detect feed type |
| 13:07 |
|
jonalv |
@pelezilla "#117" |
| 13:07 |
|
zarah |
Cannot detect feed type |
| 13:10 |
|
edrin |
hi |
| 13:10 |
|
zarah |
hi edrin |
| 13:17 |
|
CIA-53 |
bioclipse: egonw * r7624 /bioclipse2/trunk/plugins/net.bioclipse.core.tests/src/net/bioclipse/core/tests/AbstractManagerTest.java: Implemented last two API pattern tests (closes #112) |
| 13:20 |
|
egonw |
Gpox: ping |
| 13:20 |
|
egonw |
meeting in my room? |
| 13:20 |
|
egonw |
do you bring you laptop? |
| 13:21 |
|
Gpox |
ok |
| 13:26 |
|
edrin |
jonalv: i have seen commits from masak. did he fix the newline problem of the console? |
| 13:27 |
|
jonalv |
edrin: no he tried to but totally broke it instead... :( |
| 13:27 |
|
edrin |
ic |
| 13:27 |
|
edrin |
happend to me |
| 13:27 |
|
edrin |
when i tried it |
| 13:27 |
|
edrin |
*also |
| 13:28 |
|
jonalv |
I whish I knew why he commited it though... |
| 13:28 |
|
jonalv |
:/ |
| 13:28 |
|
edrin |
heh |
| 13:58 |
|
egonw |
jonalv, edrin: solution is easy |
| 13:58 |
|
egonw |
revert his patches and commit |
| 13:58 |
|
egonw |
then file a bug report pointing to the reverts |
| 13:59 |
|
jonalv |
egonw: yea I guess. I haven't felt it important enough but if someone does then please so it :) |
| 14:01 |
|
CIA-53 |
bioclipse: egonw * r7625 /bioclipse2/trunk/plugins/ (3 files in 3 dirs): Have it extend AbstractManagerTest |
| 14:07 |
|
edrin |
well... in my opinion it's not worth it to revert. it was corrupt before, too... |
| 14:08 |
|
edrin |
egonw: did you have to read thing through ? |
| 14:08 |
|
egonw |
nope, sorry |
| 14:08 |
|
egonw |
family arrived at our place last nite, and really, really tired |
| 14:09 |
|
edrin |
ok :) |
| 14:30 |
|
CIA-53 |
bioclipse: egonw * r7626 /bioclipse2/trunk/plugins/ (5 files in 3 dirs): Moved depictSybylAtomTypes to cdkdebug (closes #28) |
| 14:42 |
|
egonw |
brb |
| 14:44 |
|
|
egonw joined #bioclipse |
| 15:09 |
|
CIA-53 |
bioclipse: egonw * r7627 /bioclipse2/trunk/plugins/net.bioclipse.jmol.test/src/net/bioclipse/jmol/test/CoverageTest.java: Removed @Override annotation |
| 15:13 |
|
CIA-53 |
bioclipse: egonw * r7628 /bioclipse2/trunk/plugins/ (31 files in 17 dirs): Added two test suites: for cml and ui.business |
| 15:37 |
|
egonw |
jonalv: btw, did you know your gist made it to FriendFeed: http://friendfeed.com/rooms/bioclipse |
| 15:37 |
|
zarah |
egonw's link is also http://tinyurl.com/6bbxz5 |
| 15:37 |
|
jonalv |
nope I did not |
| 15:43 |
|
CIA-53 |
bioclipse: egonw * r7629 /bioclipse2/trunk/ (3 files in 2 dirs): Added method to output the CDK atom types |
| 15:51 |
|
CIA-53 |
bioclipse: egonw * r7630 /bioclipse2/trunk/plugins/net.bioclipse.scripting.ui.tests/ (15 files in 8 dirs): Added test suite for scripting.ui |
| 15:53 |
|
jonalv |
Brunn is borken I am have a live demo planned tomorrow... |
| 15:54 |
|
jonalv |
It\s not show stopeer borken but it's not 100% working either... |
| 15:54 |
|
jonalv |
:( |
| 15:56 |
|
egonw |
indeed |
| 15:56 |
|
egonw |
anything I can do? |
| 15:56 |
|
jonalv |
probably not |
| 15:57 |
|
* jonalv |
hates Hibernate! |
| 15:57 |
|
egonw |
ummm... same here |
| 15:57 |
|
egonw |
didn't I tell you so? |
| 15:57 |
|
jonalv |
egonw: no... |
| 15:57 |
|
CIA-53 |
bioclipse: egonw * r7631 /bioclipse2/trunk/plugins/ (3 files in 3 dirs): Added scripting.ui coverage test |
| 15:57 |
|
egonw |
ok, hereby I do... |
| 15:57 |
|
egonw |
don't use Hibernate |
| 15:57 |
|
egonw |
it sucks |
| 15:58 |
|
egonw |
yes, *very* *bad* timing to say so, I know |
| 15:58 |
|
egonw |
sorry about that |
| 15:59 |
|
egonw |
never mind me |
| 15:59 |
|
egonw |
anyway... I hate it too |
| 15:59 |
|
egonw |
tried it in Cologne... |
| 15:59 |
|
egonw |
made some progress, but really cumbersome |
| 16:00 |
|
jonalv |
Brunn is based on Hibernate... ;/ |
| 16:01 |
|
egonw |
well, there are worse things... |
| 16:11 |
|
CIA-53 |
bioclipse: egonw * r7632 /bioclipse2/trunk/plugins/net.bioclipse.ui.business.tests/src/net/bioclipse/ui/business/tests/ (JmolManagerTest.java UIManagerTest.java): More reasonable name |
| 16:12 |
|
CIA-53 |
bioclipse: egonw * r7633 /bioclipse2/trunk/plugins/net.bioclipse.core.tests/src/net/bioclipse/core/tests/coverage/AbstractCoverageTest.java: Fixed message for recent rename |
| 16:13 |
|
CIA-53 |
bioclipse: egonw * r7634 /bioclipse2/trunk/plugins/ (4 files in 3 dirs): Added TestClasses annotation |
| 16:44 |
|
jonalv |
egonw: Can you recommend something else instead of Hibernate? |
| 16:45 |
|
jonalv |
egonw: I can: ibatis |
| 16:45 |
|
CIA-53 |
bioclipse: egonw * r7635 /bioclipse2/trunk/plugins/net.bioclipse.cdk.debug/src/net/bioclipse/cdkdebug/business/CDKDebugManager.java: Reworked code to not stop perception after the first fail |
| 16:45 |
|
jonalv |
This is why I am using iBaits for structuredb |
| 16:45 |
|
egonw |
I'd go for MyChem or PgChem |
| 16:45 |
|
jonalv |
sure it means working with two different ORMs at the same time but it's worth it. I really hate Hibernate! |
| 16:45 |
|
CIA-53 |
bioclipse: carl_masak * r7636 /bot/trunk/zarah.pl: [zarah] now @plan and @replan change last-worked-on task |
| 16:46 |
|
|
zarah joined #bioclipse |
| 16:46 |
|
egonw |
you have to show me the details about iBatis |
| 16:48 |
|
jonalv |
egonw: sure |
| 16:54 |
|
|
zarah joined #bioclipse |
| 16:54 |
|
CIA-53 |
bioclipse: carl_masak * r7637 /bot/trunk/zarah.pl: [zarah] fixed slight bug in last commit |
| 16:54 |
|
egonw |
have to run to catch the bus |
| 16:54 |
|
egonw |
bbol |
| 17:01 |
|
CIA-53 |
bioclipse: carl_masak * r7638 /bot/trunk/zarah.pl: [zarah] now matches "fixes" and "closes" as synonyms for "bug" in "bug #NN" |
| 17:08 |
|
CIA-53 |
bioclipse: carl_masak * r7639 /bot/trunk/zarah.pl: [zarah] now un-sets last-worked-on when user deletes a task |
| 17:12 |
|
|
zarah joined #bioclipse |
| 18:16 |
|
|
edrin left #bioclipse |
| 19:28 |
|
|
egonw joined #bioclipse |
| 21:07 |
|
|
charlgren joined #bioclipse |
| 21:45 |
|
|
charlgren joined #bioclipse |
| 21:45 |
|
|
egonw joined #bioclipse |
| 21:45 |
|
|
zarah joined #bioclipse |
| 21:45 |
|
|
CIA-53 joined #bioclipse |
| 21:45 |
|
|
ilogger2 joined #bioclipse |
| 21:45 |
|
|
stain joined #bioclipse |
| 21:46 |
|
|
ChanServ joined #bioclipse |
