| Time |
S |
Nick |
Message |
| 07:29 |
|
|
egonw joined #bioclipse |
| 08:24 |
|
|
olass joined #bioclipse |
| 08:24 |
|
olass |
hi all |
| 08:24 |
|
zarah |
hi olass |
| 08:29 |
|
egonw |
hi olass |
| 08:29 |
|
olass |
hi egonw |
| 08:30 |
|
olass |
egonw: feeling better? |
| 08:30 |
|
egonw |
better than thursday, yes |
| 08:30 |
|
egonw |
but still very tired |
| 08:30 |
|
olass |
but not super? |
| 08:30 |
|
olass |
I see |
| 08:30 |
|
egonw |
no |
| 08:30 |
|
egonw |
you need super powers today? |
| 08:30 |
|
olass |
nasty bug that |
| 08:31 |
|
olass |
:-) |
| 08:31 |
|
olass |
I'll have a look at the MoleculesTable, trying top display SDF properties |
| 08:31 |
|
* egonw |
is getting his new laptop up and running |
| 08:31 |
|
olass |
cool |
| 08:32 |
|
egonw |
nice machine |
| 08:32 |
|
olass |
did you get the windows laptop? |
| 08:32 |
|
olass |
from my office? |
| 08:32 |
|
egonw |
really small, and light weight |
| 08:32 |
|
egonw |
no, not yet |
| 08:32 |
|
egonw |
my bag was full |
| 08:32 |
|
olass |
ask Magnus if you need a windows cd |
| 08:32 |
|
olass |
and/or antivirus |
| 08:32 |
|
egonw |
yes, no worries |
| 08:32 |
|
olass |
hope you get it up and running |
| 08:32 |
|
olass |
it might or might not need reinstallation of windows |
| 08:33 |
|
olass |
donät remember |
| 08:33 |
|
egonw |
we'll see... |
| 08:33 |
|
egonw |
no worries about that |
| 09:03 |
|
|
Julio joined #bioclipse |
| 09:08 |
|
|
shk3 joined #bioclipse |
| 09:08 |
|
|
Julio joined #bioclipse |
| 09:46 |
|
* egonw |
is booting a second Eclipse |
| 09:46 |
|
egonw |
with 4GB of memory, to instances should be OK |
| 09:47 |
|
|
jonalv joined #bioclipse |
| 09:48 |
|
jonalv |
hi |
| 09:48 |
|
zarah |
hi jonalv |
| 09:50 |
|
egonw |
hi jonalv |
| 09:50 |
|
jonalv |
masak lost his computer. A guy with a knife has it... :( |
| 09:52 |
|
egonw |
Mmmm... here in save old Uppsala? |
| 09:52 |
|
egonw |
save -> safe |
| 09:52 |
|
jonalv |
No I think it was at the central station in Stockholm |
| 09:53 |
|
jonalv |
there had been lots of witnesses... |
| 09:53 |
|
egonw |
but it was not a trade fortunately? |
| 09:53 |
|
egonw |
that is... he the laptop, carl the knife? |
| 09:53 |
|
egonw |
you know, somewhere down his belly |
| 09:54 |
|
jonalv |
hm make that Göteborg |
| 09:56 |
|
jonalv |
egonw: you lost me... |
| 09:56 |
|
egonw |
nevermind |
| 09:56 |
|
egonw |
carl's OK? |
| 09:59 |
|
jonalv |
yea he seem ok |
| 09:59 |
|
jonalv |
as ok as you can be when you lost your computer to a guy with a knife... |
| 09:59 |
|
|
Julio joined #bioclipse |
| 09:59 |
|
egonw |
sure |
| 10:07 |
|
egonw |
olass: you asked me last week to move something around? |
| 10:07 |
|
egonw |
don't think I've done that yet |
| 10:07 |
|
egonw |
what was it again? |
| 10:07 |
|
egonw |
cdk10 to something, right? |
| 10:21 |
|
|
egonw_ joined #bioclipse |
| 10:22 |
|
egonw |
ok, "outdated" |
| 10:27 |
|
egonw |
shk3: do you have all cdk10 deps resolved? |
| 10:27 |
|
egonw |
see -devel ML about moving cdk10 plugins to trunk/outdated |
| 10:28 |
|
shk3 |
yes |
| 10:28 |
|
egonw |
OK, thanx |
| 10:28 |
|
egonw |
OT, I think only Miguel's RDF editor is now depending on it... |
| 10:29 |
|
egonw |
see his blog for what this plugin does... |
| 10:34 |
|
jonalv |
egonw: working from home today? |
| 10:35 |
|
egonw |
yes |
| 10:36 |
|
jonalv |
okey, might you show me some git-svn some other day? |
| 10:42 |
|
egonw |
what d'you wanna know? |
| 10:43 |
|
jonalv |
uhm how I do things |
| 10:43 |
|
jonalv |
I found git svn fetch |
| 10:43 |
|
jonalv |
but then what? |
| 10:43 |
|
egonw |
mom |
| 10:43 |
|
egonw |
http://chem-bla-ics.blogspot.com/search?q=git-svn |
| 10:43 |
|
zarah |
egonw's link is also http://tinyurl.com/6785jz |
| 10:43 |
|
egonw |
in particular: |
| 10:43 |
|
egonw |
http://chem-bla-ics.blogspot.c[…]es-using-git.html |
| 10:44 |
|
zarah |
egonw's link is also http://tinyurl.com/5t7vd9 |
| 10:44 |
|
egonw |
replace svnroot/cdk/cdk with svnroot/bioclipse/bioclipse2 |
| 10:44 |
|
egonw |
but maybe you already got that far? |
| 10:45 |
|
egonw |
anyway... that item already has info on the basic update/edit/commit steps |
| 10:45 |
|
jonalv |
I will read it |
| 10:47 |
|
egonw |
CIA-32: another secret mission? |
| 10:47 |
|
egonw |
CIA-32: or just trying to understand the xkdc? |
| 10:51 |
|
jonalv |
egonw: you mean xkcd? |
| 10:51 |
|
egonw |
right |
| 10:58 |
|
egonw |
all: please update you Mylyn configs to set the repos version to 3.0 |
| 10:58 |
|
egonw |
for Pele BugZilla |
| 11:30 |
|
shk3 |
what do you think about a wizard in the sdfeditor to create new sdfs by choosing structures/directories from file system? |
| 11:30 |
|
egonw |
sounds good |
| 12:34 |
|
egonw |
olass: ping |
| 12:34 |
|
olass |
egonw: pong |
| 12:34 |
|
egonw |
net.bioclipse.chemoinformatics can contain New Wizards? |
| 12:35 |
|
olass |
which one you mean? |
| 12:35 |
|
olass |
In principle yes |
| 12:35 |
|
egonw |
ok, good |
| 12:35 |
|
egonw |
(it will need change deps) |
| 12:35 |
|
olass |
It should not depend on cdk though |
| 12:35 |
|
olass |
that's why we have it |
| 12:36 |
|
olass |
others can depend on it, not the other way around |
| 12:36 |
|
olass |
agreed? |
| 12:36 |
|
egonw |
right |
| 12:36 |
|
olass |
good |
| 12:36 |
|
egonw |
not sure if you only wanted branding code in it |
| 12:36 |
|
egonw |
for the feature |
| 12:38 |
|
|
gilleain joined #bioclipse |
| 12:38 |
|
egonw |
hi gilleain |
| 12:38 |
|
gilleain |
¥ø |
| 12:38 |
|
gilleain |
how's it going? |
| 12:38 |
|
olass |
egonw: I thought chemoinfo stuff without dep to anything |
| 12:39 |
|
egonw |
olass: right |
| 12:51 |
|
egonw |
olass: adding a dep on ui.ide is OK? |
| 12:52 |
|
olass |
yup |
| 12:52 |
|
egonw |
it's for using BasicNewFileWizard |
| 12:56 |
|
|
edrin joined #bioclipse |
| 12:56 |
|
edrin |
hi |
| 12:56 |
|
zarah |
hi edrin |
| 12:57 |
|
olass |
hi edrin |
| 12:57 |
|
jonalv |
hi edrin |
| 12:57 |
|
zarah |
hi edrin |
| 13:08 |
|
gilleain |
goodbye cdk10 plugins... |
| 13:10 |
|
egonw |
:) |
| 13:11 |
|
gilleain |
oooh. external jcp selections from the view in bioclipse. great. |
| 13:11 |
|
egonw |
right... |
| 13:11 |
|
egonw |
but only one selection at this moment |
| 13:12 |
|
egonw |
but also atom coloring from outside... |
| 13:12 |
|
egonw |
by using custom IAtomColorer |
| 13:13 |
|
gilleain |
right. |
| 13:18 |
|
gilleain |
ugh. didn't realise that there was an ISelection in JFace. Should have guessed, I suppose. |
| 13:18 |
|
egonw |
:) |
| 13:19 |
|
shk3 |
do we have a policy on what manager methods should do |
| 13:19 |
|
shk3 |
when they try to create a file |
| 13:19 |
|
shk3 |
and the file already exists? |
| 13:20 |
|
shk3 |
overwrite? |
| 13:20 |
|
shk3 |
or should the manager guarantee nothing is overwritten? |
| 13:20 |
|
shk3 |
have a force flag? |
| 13:22 |
|
egonw |
no convention on that, I think |
| 13:22 |
|
egonw |
but sounds like a good proposal |
| 13:22 |
|
egonw |
best way to put this convention into effect is to add a unit test |
| 13:22 |
|
egonw |
for the various situations |
| 13:24 |
|
shk3 |
I tend to the force flag |
| 13:24 |
|
shk3 |
if false, |
| 13:24 |
|
shk3 |
fail on extisting files |
| 13:24 |
|
shk3 |
if true, |
| 13:24 |
|
shk3 |
write anyway |
| 13:24 |
|
shk3 |
then the person using the method has to decide and nothing |
| 13:25 |
|
shk3 |
is done implicitly or assumed |
| 13:26 |
|
egonw |
this is on the manager level, right? |
| 13:27 |
|
egonw |
I'd rather see a exists() method |
| 13:28 |
|
egonw |
and no force flag |
| 13:28 |
|
egonw |
and fail when people are creating a file, when already one exists |
| 13:28 |
|
egonw |
a remove() should then be done before |
| 13:29 |
|
egonw |
cleaner API |
| 13:29 |
|
shk3 |
but shouldn't an overwrite be possible as well? |
| 13:29 |
|
egonw |
the above allows that: |
| 13:30 |
|
egonw |
if (exists(X)) { |
| 13:30 |
|
egonw |
remove(X) |
| 13:30 |
|
egonw |
write(X) |
| 13:30 |
|
egonw |
} else { |
| 13:30 |
|
egonw |
write(X) |
| 13:30 |
|
egonw |
} |
| 13:30 |
|
egonw |
ah, so better: |
| 13:30 |
|
egonw |
if (exists(X)) remove(X); |
| 13:30 |
|
egonw |
write(X); |
| 13:32 |
|
egonw |
if not mistaken, we got all these already... |
| 13:32 |
|
egonw |
let me check |
| 13:32 |
|
egonw |
ah, no ... |
| 13:32 |
|
egonw |
exists seems to be missing |
| 13:33 |
|
egonw |
will add that |
| 13:33 |
|
shk3 |
but that means that a stupid programer can write something which overwrites files without warning |
| 13:33 |
|
egonw |
no |
| 13:34 |
|
egonw |
I said the write() would throw an Exception |
| 13:34 |
|
egonw |
if the file already exists |
| 13:34 |
|
egonw |
where write() == IUIManager.save() |
| 13:36 |
|
jonalv |
AAAAAAAAAHHHHHHH |
| 13:36 |
|
shk3 |
ah ok |
| 13:36 |
|
shk3 |
your exists code would be on the code using the manager |
| 13:36 |
|
egonw |
jonalv: everything OK? |
| 13:37 |
|
jonalv |
egonw: not really no... |
| 13:37 |
|
egonw |
shk3: what do you mean? |
| 13:37 |
|
jonalv |
the console is putting up a big fight... |
| 13:37 |
|
gilleain |
the bioclipse console? |
| 13:37 |
|
jonalv |
gilleain: bingo |
| 13:37 |
|
shk3 |
the code if(exists... |
| 13:37 |
|
shk3 |
would not be in the manager |
| 13:38 |
|
shk3 |
but write() is a manager method? |
| 13:38 |
|
egonw |
there would be such code in write() |
| 13:38 |
|
egonw |
otherwise it cannot throw an exception |
| 13:39 |
|
shk3 |
but if write does the if exists remove then |
| 13:40 |
|
shk3 |
it overwrites? |
| 13:41 |
|
egonw |
no, it will not do the overwrite |
| 13:41 |
|
egonw |
it would throw an Exception |
| 13:42 |
|
shk3 |
but then this if exists is not done in the manager? |
| 13:45 |
|
jonalv |
and the Eclipse debugger sucks |
| 13:46 |
|
jonalv |
AAAAAAHHHHH |
| 13:47 |
|
egonw |
shk3: why do you think that? |
| 13:49 |
|
shk3 |
because if this "if extist remove" is done in the manager |
| 13:49 |
|
shk3 |
in the createblah of the manager |
| 13:50 |
|
shk3 |
it does not need to throw an exception |
| 13:50 |
|
shk3 |
and does the overwrite |
| 13:50 |
|
shk3 |
sorry, I do something |
| 13:50 |
|
shk3 |
please give an explanatin |
| 13:50 |
|
shk3 |
of what you want |
| 13:50 |
|
shk3 |
which also idiots like me can understand |
| 13:50 |
|
shk3 |
thanks |
| 13:50 |
|
egonw |
inside UIManager.save() there would be: |
| 13:51 |
|
egonw |
if (exists(X)) throw new SomeException(); |
| 13:51 |
|
egonw |
that's all |
| 13:51 |
|
shk3 |
so the remove is not in the manager? |
| 13:51 |
|
egonw |
no |
| 13:51 |
|
shk3 |
ah |
| 13:52 |
|
shk3 |
so it is in the code using the manager |
| 13:52 |
|
egonw |
right |
| 13:55 |
|
jonalv |
I think that git is making troubles for me |
| 13:58 |
|
egonw |
shk3: almost done adding the exists |
| 14:02 |
|
egonw |
jonalv: ping |
| 14:02 |
|
jonalv |
egonw: pong |
| 14:02 |
|
egonw |
you wrote transform()? |
| 14:02 |
|
egonw |
in ResourcePathTransformater? |
| 14:02 |
|
jonalv |
egonw: probably... |
| 14:02 |
|
egonw |
ok, good enough for me :) |
| 14:02 |
|
jonalv |
or hm I thin I wrote the tests and GPox the code... |
| 14:03 |
|
egonw |
any reason to throw an exception when result == null? |
| 14:03 |
|
egonw |
instead of returning null? |
| 14:03 |
|
jonalv |
uhm hang on |
| 14:03 |
|
jonalv |
you lsot me... |
| 14:03 |
|
egonw |
line 49-50 |
| 14:03 |
|
jonalv |
+ Eclipse + git +everything is messed up so I can\t look at the code\ |
| 14:04 |
|
egonw |
:( |
| 14:04 |
|
egonw |
I'll help tomorrow |
| 14:05 |
|
jonalv |
egonw: could you give me full path to the file? |
| 14:05 |
|
egonw |
/net.bioclipse.core/src/net/bioclipse/core/ResourcePathTransformer.java |
| 14:06 |
|
jonalv |
vim to the rescue :) |
| 14:06 |
|
jonalv |
I am looking at the code and yea I wrote that... |
| 14:07 |
|
jonalv |
egonw: better to throw exception than to return null and get a strange NPE at some strange location... |
| 14:07 |
|
egonw |
depends on the use case... |
| 14:07 |
|
egonw |
I was using it for an exists() method... |
| 14:07 |
|
jonalv |
egonw: http://c2.com/cgi/wiki?NoNullBeyondMethodScope |
| 14:07 |
|
zarah |
jonalv's link is also http://tinyurl.com/4ndr5p |
| 14:08 |
|
egonw |
ah... interesting... |
| 14:08 |
|
egonw |
did they consider that exceptions make java really show? |
| 14:08 |
|
jonalv |
masak is beside me whishing he was online... :) |
| 14:08 |
|
jonalv |
egonw: Exceptions are for exceptional circumstances... |
| 14:08 |
|
egonw |
yes, I'm only getting started |
| 14:09 |
|
egonw |
I'm also going to convince you of catching Exception's... :) |
| 14:10 |
|
egonw |
OK, fair |
| 14:10 |
|
egonw |
I was hoping to use the method for the exists() code... |
| 14:10 |
|
egonw |
now I just have to duplicate the functionality... |
| 14:10 |
|
egonw |
no problem |
| 14:10 |
|
jonalv |
you lost me... |
| 14:11 |
|
jonalv |
that code creates an IFile. Why do you want to create an IFile when you are checking if something exists? |
| 14:12 |
|
egonw |
well... I get a String (because I need to implement that too, right?) |
| 14:12 |
|
egonw |
and need to see if that exists... |
| 14:12 |
|
egonw |
all other manager calls are using the ResourcePathTransformer for that |
| 14:13 |
|
egonw |
but I understand why that is not possible... |
| 14:13 |
|
egonw |
but still I need that kind of functionality... |
| 14:13 |
|
jonalv |
I don't think I understand your problem. :( |
| 14:15 |
|
egonw |
I need code to check if String filePath exists... |
| 14:15 |
|
egonw |
I'll just do this now: |
| 14:15 |
|
egonw |
masak: note the catch clause ;) |
| 14:15 |
|
egonw |
public boolean exists(String filePath) { |
| 14:15 |
|
egonw |
try { |
| 14:16 |
|
egonw |
return exists(ResourcePathTransformer.getInstance() |
| 14:16 |
|
egonw |
.transform( filePath )); |
| 14:16 |
|
egonw |
} catch (IllegalArgumentException exception) { |
| 14:16 |
|
egonw |
return false; |
| 14:16 |
|
egonw |
} |
| 14:16 |
|
egonw |
} |
| 14:16 |
|
egonw |
that's the use case... |
| 14:16 |
|
jonalv |
masak is not pleased |
| 14:17 |
|
egonw |
masak: that's why I'm asking... |
| 14:17 |
|
egonw |
suggestions please |
| 14:17 |
|
jonalv |
implement that method please... |
| 14:17 |
|
egonw |
as ResourcePathTransformer.exists() ? |
| 14:17 |
|
jonalv |
yea |
| 14:18 |
|
egonw |
ok |
| 14:20 |
|
egonw |
actually... no |
| 14:20 |
|
egonw |
won't do that... |
| 14:20 |
|
egonw |
there is much more going on in there than I like to touch... |
| 14:20 |
|
jonalv |
egonw: what will you do? |
| 14:20 |
|
egonw |
for example |
| 14:20 |
|
egonw |
why is parsePath() trying alternative file names? |
| 14:21 |
|
egonw |
IPath path = new Path(resourceString); |
| 14:21 |
|
egonw |
IFile file = ResourcesPlugin.getWorkspace() |
| 14:21 |
|
egonw |
.getRoot().getFile( path ); |
| 14:21 |
|
egonw |
file.exists() |
| 14:21 |
|
egonw |
masak: happy with that? |
| 14:22 |
|
jonalv |
egonw: I wonder if that one does all that we want |
| 14:23 |
|
egonw |
no, it only does parseRelative() |
| 14:23 |
|
egonw |
and not parseURI(), parsePath() |
| 14:24 |
|
egonw |
but the last one is trying alternative file names??? |
| 14:24 |
|
egonw |
can someone please explain that? |
| 14:24 |
|
egonw |
that sounds rather unwanted... |
| 14:24 |
|
egonw |
if one then records save(String filePath) |
| 14:25 |
|
egonw |
it will try alternative paths? |
| 14:25 |
|
egonw |
if one then records save(IFile) as save(String filePath) |
| 14:25 |
|
jonalv |
egonw: I don't know |
| 14:26 |
|
egonw |
masak? |
| 14:26 |
|
jonalv |
masak does not know anything about that |
| 14:29 |
|
egonw |
:( that alternatives code is Gpox's.... |
| 14:30 |
|
egonw |
@pelezilla 179 |
| 14:30 |
|
zarah |
http://tinyurl.com/6nnv93 |
| 14:33 |
|
gilleain |
hahahaaa. lolwhat? |
| 14:33 |
|
egonw |
huh? |
| 14:33 |
|
gilleain |
} else if (type.equals("majorPlusOne")) |
| 14:33 |
|
gilleain |
{ |
| 14:33 |
|
gilleain |
isotopeNumber++; |
| 14:33 |
|
gilleain |
} else if (type.equals("majorPlusTwo")) |
| 14:33 |
|
gilleain |
{ |
| 14:33 |
|
gilleain |
isotopeNumber++; |
| 14:33 |
|
gilleain |
isotopeNumber++; |
| 14:33 |
|
gilleain |
} else if (type.equals("majorPlusThree")) |
| 14:33 |
|
gilleain |
{ |
| 14:33 |
|
gilleain |
isotopeNumber++; |
| 14:33 |
|
gilleain |
isotopeNumber++; |
| 14:33 |
|
gilleain |
isotopeNumber++; |
| 14:33 |
|
zarah |
isotopeNumber++; |
| 14:33 |
|
gilleain |
(that) |
| 14:33 |
|
gilleain |
exactly! |
| 14:33 |
|
egonw |
zarah: nah, that's wrong |
| 14:33 |
|
zarah |
egonw: excuse me? |
| 14:34 |
|
egonw |
@karma isotopeNumber |
| 14:34 |
|
zarah |
isotopeNumber has a karma of 6 |
| 14:34 |
|
gilleain |
hoho |
| 14:35 |
|
jonalv |
ROFLOL |
| 14:37 |
|
egonw |
shk3: exists() being commited |
| 14:39 |
|
gilleain |
no cia? |
| 14:40 |
|
egonw |
too busy catching illegal import of x-mas presents by some dude in a red dress |
| 14:40 |
|
gilleain |
:) |
| 14:40 |
|
jonalv |
eclipse is totally broken |
| 14:41 |
|
jonalv |
i can't change anything |
| 14:41 |
|
egonw |
I downloaded a fresh Eclipse this weekend |
| 14:41 |
|
egonw |
for my new laptop |
| 14:41 |
|
jonalv |
it just keeps runnign the same old code no mather what changes I make |
| 14:41 |
|
egonw |
works like a charm |
| 14:41 |
|
egonw |
which version did you download? |
| 14:41 |
|
jonalv |
I have spent the day trying to fix bugs but theyt just won't change |
| 14:41 |
|
jonalv |
no matter what I do I get the same behcaoir |
| 14:42 |
|
jonalv |
3.4.1 |
| 14:42 |
|
jonalv |
no sysouts work |
| 14:42 |
|
jonalv |
nothing works |
| 14:42 |
|
egonw |
:( |
| 14:42 |
|
egonw |
not nice |
| 14:42 |
|
jonalv |
AAAAAAGHHHHHHHHH |
| 14:43 |
|
gilleain |
no sysouts? gah |
| 14:43 |
|
jonalv |
my changes does not go trhough |
| 14:43 |
|
jonalv |
it just keeps on running the same binaries |
| 14:45 |
|
gilleain |
the same classfiles? |
| 14:46 |
|
jonalv |
I think so. I don't know what it does..; |
| 14:46 |
|
gilleain |
clean project, I suppose. |
| 14:46 |
|
jonalv |
tried that |
| 14:46 |
|
gilleain |
weird |
| 14:47 |
|
gilleain |
but…how… |
| 14:47 |
|
jonalv |
I don't know |
| 14:48 |
|
gilleain |
cached class files. or perhaps voodoo magic. |
| 14:48 |
|
jonalv |
yea something like that |
| 14:48 |
|
jonalv |
it explains why I can't work anyway... |
| 14:49 |
|
gilleain |
but lets say you delete all traces of eclipse from a machine, re-check out the sources, and build, then there could not be any old classfiles |
| 14:50 |
|
gilleain |
so, delete the .eclipse dir, everything. |
| 14:50 |
|
gilleain |
tiresome, but still, it surely must work. |
| 14:52 |
|
* jonalv |
is downloading a new Eclipse version now.. |
| 15:08 |
|
jonalv |
egonw: what is a userscript? |
| 15:15 |
|
egonw |
umm... quite like a bioclipse javascript |
| 15:15 |
|
egonw |
but than in FireFox |
| 15:16 |
|
jonalv |
egonw: you don't think your definition is a bit narrow? |
| 15:17 |
|
* jonalv |
sees the exam question what is a userscript? |
| 15:17 |
|
jonalv |
correct answer: |
| 15:17 |
|
jonalv |
1. JavaScript |
| 15:17 |
|
jonalv |
2. in a webbrowser |
| 15:18 |
|
jonalv |
3. runsd automagicly when the user visits a certain web page |
| 15:18 |
|
olass |
http://userscripts.org/ |
| 15:19 |
|
jonalv |
whiskey tango foxtrot |
| 15:19 |
|
olass |
never dance sober? |
| 15:20 |
|
jonalv |
how can they steal that word? |
| 15:20 |
|
olass |
whiskey, vodka, vodka, gin, salsa? |
| 15:22 |
|
jonalv |
it's as if we would steal the word manager and define it as: A Spring empowered object existing in a javascript environment with this and that annotation... |
| 15:22 |
|
gilleain |
anytime, anyplace, anywhere |
| 15:22 |
|
gilleain |
it's a wonderful world you can share |
| 15:25 |
|
* jonalv |
should have stayed in bed today |
| 15:26 |
|
gilleain |
heh. wtf :: whiskey tango foxtrot :: gin sprite walz :: gsw. |
| 15:27 |
|
gilleain |
Anyway; there seems to be a concurrent modification exception in ChemObjects that are notifying listeners of changes. |
| 15:28 |
|
gilleain |
I guess it would be a bad idea to synchronise on the listener list, for speed reasons. |
| 15:40 |
|
egonw |
gilleain: or use the nonotify classes |
| 15:40 |
|
gilleain |
tried that |
| 15:40 |
|
gilleain |
(or shk3 did) |
| 15:41 |
|
gilleain |
I'm thinking that the hub could have a getMolecularFormula method.. |
| 15:42 |
|
gilleain |
but, that also there is some inconsistency between hub methods for adding atoms/bonds/rings, to do with handling molecule sets and atomcontainers |
| 15:42 |
|
egonw |
please email |
| 15:42 |
|
egonw |
will check it asap |
| 15:42 |
|
gilleain |
okey |
| 17:21 |
|
jonalv |
I think my branch is working now! |
| 17:21 |
|
jonalv |
finally |
| 17:21 |
|
jonalv |
I am happy again |
| 17:21 |
|
jonalv |
egonw, olass: I am sorry for everything! :) |
| 17:22 |
|
olass |
jonalv: great! |
| 17:22 |
|
olass |
what did you do? |
| 17:22 |
|
jonalv |
reinstalled Eclipse and fixed the errors in the code |
| 17:22 |
|
* jonalv |
has switched to git now... |
| 17:22 |
|
jonalv |
I still have much to learn about git though... :) |
| 17:23 |
|
jonalv |
for example how do I switch branch? :) |
| 17:27 |
|
olass |
cu tomorrow |
| 17:27 |
|
* olass |
will now buy a christmas tree |
| 17:27 |
|
olass |
bye |
| 17:27 |
|
jonalv |
oki |
| 17:43 |
|
|
edrin left #bioclipse |
| 17:43 |
|
|
edrin joined #bioclipse |
| 17:43 |
|
edrin |
hi again |
| 17:44 |
|
jonalv |
hi edrin |
| 17:50 |
|
* jonalv |
is out of here. cya |
| 18:00 |
|
edrin |
egonw: did you take a look in the google docs? |
| 18:01 |
|
egonw |
no :( |
| 19:27 |
|
|
egonw joined #bioclipse |
| 21:42 |
|
|
edrin left #bioclipse |
| 22:37 |
|
CIA-32 |
bioclipse: egonw * r8061 /bioclipse2/trunk/cdk-externals/trunk/ (2 files in 2 dirs): Added three convenience methods |
| 22:37 |
|
CIA-32 |
bioclipse: egonw * r8062 /bioclipse2/trunk/cdk-externals/trunk/org.openscience.cdk.control/ (2 files in 2 dirs): Use addAtom(C, Point2d(0,0)) first a first atom to an empty canvas... but still does not draw it centered... |
