Camelia, the Perl 6 bug

IRC log for #bioclipse, 2009-01-23

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All times shown according to UTC.

Time Nick Message
07:59 Gpox joined #bioclipse
08:59 Gpox joined #bioclipse
08:59 ilogger2 joined #bioclipse
09:11 edrin joined #bioclipse
09:25 shk3 joined #bioclipse
09:54 olass joined #bioclipse
09:56 egonw joined #bioclipse
09:56 egonw moin
09:56 zarah ni hao egonw
10:04 edrin hello egonw
10:04 egonw hi edrin
10:07 olass oi
10:07 olass @oiga
10:21 egonw olass: how much time would it take to set up bugs.bioclipse.net and have it point to pelezilla?
10:21 egonw 5 lines of HTML would do the redirect
10:22 egonw so it comes down to the subdomain and room for this 5-line index.html
10:23 olass egonw: I could do this
10:23 olass file me a bug
10:23 egonw ok
10:23 egonw I can send you that 5 line HTML code, if you like
10:24 egonw @bug 280
10:24 zarah http://tinyurl.com/ajnvqb
10:33 egonw http://chem-bla-ics.blogspot.com/2009/01/​statistics-on-development-community.html
10:33 zarah egonw's link is also http://tinyurl.com/dbxarr
10:36 shk3 olass: just trying the intro stuff
10:36 olass ok
10:36 shk3 do you know if the link element can link to a cheat sheet?
10:36 shk3 or is it url?
10:36 olass it can
10:36 shk3 but then what is a url like for  a cheat sheet?
10:36 olass no idea
10:36 olass but it can
10:37 olass google for it
10:37 zarah olass: http://www.mlive.com/opinion/flint/index.ssf​/2009/01/its_time_to_pray_for_global_wa.html
10:37 shk3 i will try to find out
10:37 egonw zarah: trying to be funny?
10:37 zarah egonw: eh... wha'?
10:38 egonw olass: *very* *nice*
10:38 olass egonw: what is?
10:38 egonw the new welcome page
10:39 egonw btw, how about reinstating the drugbank example data?
10:39 egonw should only take like 15 minutes
10:40 olass yes
10:40 egonw ok, I'm on it...
10:40 olass great
10:46 olass egonw: I'm thinking of distributing the sample data feature with this release
10:46 olass as well as chemoifno feature
10:46 olass seems logical to do so
10:46 egonw as one big download from SF?
10:46 olass yes
10:47 olass sampledata is not big
10:47 egonw I had at least one request for that
10:47 egonw via email
10:47 olass in future, we should provide alternative download packages
10:47 egonw of someone who only had a very small-bandwidth dial-up at home
10:47 olass but for now, we will not
10:47 egonw ack
10:47 egonw go for it
10:47 olass :-)
10:47 egonw we still have Speclipse has separate feature
10:48 olass oh yes
10:48 olass and xmpp
10:48 egonw as well as others on the Bioclipse Experimental update site
10:48 egonw right
10:48 olass and others
10:48 egonw and even others
10:48 egonw :)
10:48 olass and structuredb
10:48 olass and xml feature
10:48 olass egonw: about the jmol feature
10:48 olass that is separate from chemoinfo feature?
10:48 egonw in progress
10:48 egonw as well as the jcp feature
10:48 olass so not in release either?
10:49 egonw yes, those will be dedicated perspectives
10:49 olass does jmol plugin now ship with chemoinfo?
10:49 egonw maybe even rebrands in the future...
10:49 egonw just for community building
10:49 olass 11:54] < olass> does jmol plugin now ship with chemoinfo?
10:49 egonw surely jmol is in the chemoinfo perspective
10:49 olass ok
10:49 olass good
10:49 egonw I hope
10:49 egonw I'll double check
10:49 egonw it should be
10:50 egonw it is
10:50 egonw btw, you saw that blog post of me today?
10:50 egonw olass: you are the number-one committer
10:50 egonw but the list is quite interesting in the tail too
10:52 olass did not see
10:52 olass @gg chem bla ics
10:52 zarah olass: http://chem-bla-ics.blogspot.com/
10:53 olass egonw: how long is the timeframe? projectstart?
10:53 egonw of what?
10:53 egonw drug bank?
10:53 olass the stats on blog
10:53 egonw yes, full git history
10:53 egonw should add up... I guess
10:54 egonw only bioclipse2 tree
10:54 egonw I guess
10:54 egonw no, for sure
10:55 olass why so?
10:55 olass please include bc1 as well
10:55 olass to give real stats!
10:55 egonw because my git is just about bioclipse2/ folder...
10:56 egonw that will require me to make a git checkout for bioclipse/ too...
10:56 egonw will do...
10:56 olass thx
10:56 egonw will start it...
10:56 egonw but won't finish today...
10:56 olass hahaha
10:57 masak joined #bioclipse
11:03 egonw olass: I'll have to have the plugin depend on .sampledata?
11:04 egonw for the data.install EP?
11:07 olass maybe
11:07 olass talk after lunch
11:07 olass brb
11:08 egonw :(
11:29 shk3 olass: new welcome screen looks great
11:29 shk3 just trying to add something...
11:39 CIA-30 bioclipse: egonw * r8466 /bioclipse2/trunk/ (21 files in 11 dirs): Copied DrugBank sample data from BC1
11:40 maclean joined #bioclipse
11:43 shk3 ok, I can contribute
11:43 shk3 but the cheat sheet does not show
11:43 shk3 working on that
12:07 shk3 not sure if cheat sheets can be displayed directly
12:08 shk3 it looks a bit like you need to implement your own IStandbyContentPart
12:18 shk3 olass: is the hello world cheat sheet working you added?
12:18 shk3 or what do you get if you click on it?
12:36 shk3 ok, working - lunch now - will commit later
12:48 olass shk3: no
12:48 olass that was justa test
12:49 olass ok, place your commits
12:49 olass it's beta release time asap
12:49 olass shk3, egonw, Gpox, edrin, masak: Any commits that will come in 30 mins?
12:50 edrin no
12:50 egonw no
12:50 olass ack
12:50 olass egonw: did you set up the drugbank plugin?
12:50 olass or post-beta?
12:50 olass oh, I see a bug
12:51 egonw set up...
12:51 egonw yes, it does not actually install...
12:51 olass egonw: did you add to teh extention point?
12:51 olass ok, will check it out
12:51 egonw yes... I think it does not install because the install wizard only uses Activator of sampledata
12:51 egonw see contect
12:51 egonw see context
12:51 olass ok
12:52 olass if I have time
13:00 shk3 olass: only in the speclipse plugins
13:00 olass that is no problem with me
13:00 olass not in core build
13:00 shk3 it seems for the cheat sheet to be called
13:01 shk3 you need to have org.eclipse.platform in the run configuration
13:01 shk3 which isn't added by the compute dependencies
13:04 olass egonw: should'nt drugbank be its own feature as well?
13:04 egonw no, don't think so...
13:04 egonw it's not so large
13:04 olass so in sample data then
13:04 olass ok
13:04 shk3 olass: it looks like the net.bc.cml_feature has not been updgraded to new version
13:04 olass shk3: that will not be released
13:04 olass cml, jcp, jmol features are for the future
13:04 egonw shk3: you can put it up at the EBI
13:05 egonw and I likely put it on 'Bioclipse Experimental'
13:05 egonw in two/three weeks
13:05 olass it WILL be on bioclipse update site later
13:05 olass just not today
13:05 olass hence no versioning
13:05 shk3 ok
13:05 shk3 i need it actually
13:06 shk3 i can add the needed plugins to speclipes feature for this release
13:08 egonw that's probably better...
13:08 egonw don't think you need a validating XML editor for Speclipse, or do you?
13:10 shk3 not now
13:11 shk3 but I could use it
13:11 shk3 but will look at this later
13:11 shk3 I use xom libs right now
13:13 olass egonw: only one sdf in plugin drugbank?
13:13 olass hmm, a 7 Mb sdf
13:13 egonw right... the full DrugBank as SDF
13:14 maclean they zip nicely
13:15 egonw does Bioclipse support sdf.gz already?
13:15 maclean I have no idea.
13:16 olass I think Gpox fixed general zip capabilities at some point...
13:16 olass egonw: we did in bc1
13:16 olass using cdk
13:16 egonw nice
13:16 olass (AFAI remember)
13:17 olass @pz 282 fixed
13:17 zarah http://tinyurl.com/cunrcg
13:17 egonw olass: I'll verify
13:18 olass egonw: what happens for you when you open the drugbank sdf in Bioclipse?
13:18 egonw it breaks
13:19 egonw see the other bug report
13:19 olass not good
13:19 olass then it will not be in release anyway
13:19 olass grrr
13:19 egonw Gpox: did you get to see bug report?
13:20 olass egonw: can you solve it in 30 mins?
13:20 egonw I might... if Gpox is online
13:20 egonw Gpox: ping
13:21 Gpox yes i did, i will check it out
13:21 olass egonw: did you do the Save as... dialog or Gpox?
13:21 egonw Gpox:
13:22 olass ok
13:22 olass I find bugs
13:22 olass egonw: have you tested the Save as...?
13:22 egonw no, not yet
13:22 olass :-(
13:22 egonw it does not work?
13:22 olass egonw: please test chemoinformatics
13:23 olass and see if there are any last minute bugs
13:23 egonw as said, it's too large to do...
13:23 egonw I have been testing the things I have been working on...
13:23 egonw I hope everyone else tests their own work too...
13:23 egonw I'm not the last line of defense...
13:24 olass egonw: so you donät want to test chemoinfo features?
13:24 olass ok
13:24 olass then I have to step in and do all that too
13:24 egonw that's not what I am saying
13:24 egonw you know that
13:24 olass we must divide the tasks
13:24 egonw but for me, a day also only has 24 hours...
13:24 olass but we have planned this 2-3 weeks ago
13:24 olass and you never said to me you'd not have time
13:25 egonw ...
13:25 olass we clearly need to work out responsibilities
13:25 olass sorry
13:25 olass just thought that you'd test it
13:25 egonw I'm testing what I can
13:25 egonw check the wiki
13:25 olass ok
13:25 egonw did you see the updated stats there?
13:25 olass anyway, this is just a beta
13:26 olass going through all now
13:26 egonw olass: I hereby have to resign repsonsibility of chemoinfo then
13:26 maclean with a beta, the users get to test it.
13:26 maclean as google shows
13:26 egonw I cannot test every feature bit of this feature
13:26 egonw no one can
13:26 egonw ola, you should understand that
13:26 olass right
13:27 olass hold on, I'm coming over
13:42 egonw Gpox: what's the prospect on the SDF problem?
13:43 egonw btw, SaveAs is working OK at my machine...
13:43 egonw Gpox:++
13:43 egonw Gpox++
13:43 egonw damn autocomplete
13:51 Gpox egonw: update and try it
13:51 egonw ok
13:52 shk3 is it intended to have several versions of a feature on an update site?
13:55 egonw depends on what you intend to support
13:55 olass shk3: I agree, that depends
13:55 egonw at some point you may have a Speclipse feature for Bioclipse 2.0 and 2.1 (or so)
13:55 olass it is not an easy question
13:55 egonw or maybe just one for the latest Bioclipse version
13:55 olass since you can have feature patches
13:55 olass but
13:56 olass my general answer is: yes
13:56 shk3 I am just wondering how multiple versions can be done
13:56 olass and then you let the user decide what version of the feature to install
13:56 shk3 the way I set up the update site it doesn't seem possible
13:56 olass most likely he'll take the latest
13:56 shk3 probably I did something wrong
13:56 olass shk3: it should
13:56 olass if I build my upodate site with one version
13:57 olass and then update feature/plugin version and build again, I get multiple versions on it
13:57 shk3 ah
13:57 olass egonw++ //for updating the manager stats on wiki
13:58 egonw on a month or, I hope to have this auto updated every day on pele
13:58 olass yes
13:58 * olass too
13:59 shk3 taking a closer look at site.xml
13:59 shk3 it looks a bit like on the server there should a
13:59 shk3 features directory
13:59 shk3 and in there
14:00 shk3 no, can't be
14:00 shk3 confusing
14:01 shk3 right now, i have the directory which is visible as
14:01 shk3 http://www.ebi.ac.uk/steinbeck-srv/specl​ipse/net.bioclipse.speclipse-updatesite/
14:01 zarah shk3's link is also http://tinyurl.com/5cvnvp
14:01 shk3 on the web
14:01 shk3 in here, there is site.xml, plugins and features dir
14:01 shk3 ah, and site xml could hold several entries
14:02 shk3 and all jars would be in the same features and plugins dirs, but with version number in name
14:02 shk3 ok
14:02 shk3 makes sense
14:03 shk3 sorry for the braindump
14:04 shk3 ok, but then I would think we should indeed keep a sort of archive on the update site
14:04 shk3 I will do so at least
14:10 egonw Gpox: does not seem to work for me yet
14:10 egonw Gpox: the SDF...
14:10 egonw which commit should fix it?
14:11 Gpox 8473
14:11 egonw mmm... I have that one...
14:11 egonw will Refresh my workspace and git checkout one more time to make sure
14:12 egonw Gpox: but you can open the file now, without exceptions?
14:12 Gpox remove *cdk.index from your temp forlder
14:13 egonw ok...
14:13 egonw where is my temp folder?
14:13 Gpox /tmp maby
14:14 egonw ah, indeed
14:14 egonw Gpox: does it make sense to have that tmp index deleted when Bioclipse is closed?
14:14 egonw so, mark the tmp file with java as deleteUponClose()
14:14 egonw (or something like that)
14:15 Gpox it dose
14:15 egonw mmm...
14:16 egonw OK, it sort of works now...
14:16 egonw but way too many properties...
14:16 egonw and worse
14:16 egonw they seriously overlap between rows...
14:17 egonw it's quite useless in the current form...
14:17 egonw but not a release blocker
14:17 egonw Gpox++
14:17 egonw thanx for fixing the SD reading of DrugBank
14:18 Gpox if is all relate to bug #174
14:18 egonw @bug 174
14:18 zarah http://tinyurl.com/79fbdp
14:18 egonw right
14:19 egonw these properties should just show up in the properties view
14:19 egonw maybe...
14:19 egonw or as columns
14:19 Gpox the index file is now removed on exit
14:19 Gpox should i remove the property column for now?
14:20 olass do the quickest
14:20 olass egonw: what is your opinion?
14:20 egonw remove for now
14:20 olass ok
14:20 olass Gpox: let me know ehn done
14:20 olass egonw: no pending commits?
14:21 egonw one
14:21 egonw that saveAs jjy thingy
14:21 olass ah
14:21 olass eta?
14:21 olass just so I know
14:21 egonw ETA 1min on the ETA of the commit
14:21 egonw DEBUG - java.lang.IllegalArgumentException: Filetype jjy not supported!
14:21 egonw at net.bioclipse.cdk.business.CDKMa​nager.save(CDKManager.java:373)
14:21 egonw at net.bioclipse.cdk.business.CDKManage​r.saveMolecule(CDKManager.java:455)
14:21 egonw at net.bioclipse.cdk.business.CDKManage​r.saveMolecule(CDKManager.java:424)
14:21 egonw at net.bioclipse.cdk.business.CDKManage​r.saveMolecule(CDKManager.java:419)
14:22 egonw sorry for the paste
14:22 egonw but this is just hilarious :)
14:22 egonw ETA, 5 minutes
14:22 olass thx
14:22 olass working on a classpath cycle anyway :-(
14:22 egonw ha, that's the real deal
14:23 egonw testing the fix
14:25 olass CIA-30: do your job!
14:28 Gpox olass: done removing property column from MoleculesEditor
14:29 olass Gpox++
14:31 olass egonw: finished?
14:32 egonw yes, but committing is slow
14:32 olass ok
14:32 olass egonw: you tested XMLFeature?
14:32 olass I have not tried it yet...
14:33 olass well, it's on update site anyway
14:33 egonw yes, I have tested that...
14:33 olass good
14:33 egonw but would not put it on the main update site
14:33 olass ok
14:33 egonw because the feature is not very clean, nor pretty
14:33 olass right
14:33 olass then I will not
14:33 olass well
14:33 olass this is a beta...
14:33 egonw it mostly depends on other features (from WTP/WST)
14:33 egonw but also individual plugins from eclipse...
14:34 egonw true
14:34 egonw ok, maybe just put it up...
14:34 egonw it only uses proven technology
14:34 egonw that is...
14:34 olass should we put up xmpp feature as well?
14:34 olass I want to
14:34 egonw it just wraps other features and plugins needed for it to work in Bioclipse
14:34 olass ah, let's just put it up
14:34 egonw yes, would be nice
14:35 olass it's a beta anyway
14:35 Gpox @bug 285
14:35 zarah http://tinyurl.com/dngk79
14:35 Gpox fixed
14:36 egonw saveas fix commited as 8477
14:37 olass thx
14:37 olass ok, seems like we´r edone
14:37 olass building
14:48 * olass is building for mac
14:48 olass and holding all thumbs crossed
14:53 olass hmm
14:53 shk3 doesn't sound too good
14:55 olass well, it builds
14:55 olass but seems some build.props are faulty
14:55 olass and still could not open drugbank.sdf
14:55 olass checking my revisions...
14:56 olass shk3: you on win or linux?
14:56 jonalv joined #bioclipse
14:57 jonalv oh hai
14:57 zarah hello jonalv, you fantastic person you
14:57 egonw olass: check that you no longer have an index around in your TMP folder
14:57 jonalv hello zarah yur are not so bad yourself :)
14:57 egonw (not use what TMP is on a OS/X)
14:57 olass egonw: will do
14:58 * shk3 on linux
15:01 maclean there's a /tmp on osx
15:01 maclean but it's always possible that such things are in mysterious other places
15:01 maclean like /Library/Applications\ Support/..
15:02 * egonw is commenting on "A RingMolecule is a Molecule that connectedTo itself."
15:02 egonw what do you make of that...
15:02 egonw I think it's utter nonsense
15:02 edrin indeed
15:03 maclean all molecules are connected to themselves, or else they would not be molecules
15:03 maclean so, trivially, it is true.
15:03 maclean but, yes it is nonsense.
15:03 egonw it's in a W3C draft
15:04 egonw lovely
15:04 maclean uh-oh.
15:04 edrin a molecule with a ring is a molecule that links back to itself when approaching to it recursively
15:05 olass egonw: drugbank still fails here...
15:05 edrin u see, it's why I dont like w3c?
15:05 olass what plugin and revision is the fix in?
15:05 edrin i think it is possible to define a molecule to have a ring in mathematics
15:06 maclean edrin : of course, it's basic graph theory.
15:06 edrin no clue :)
15:07 Gpox olass: r8473
15:07 maclean if a path is a sequence of connected vertices, a ring is a closed path where the start and end of the path are the same vertex.
15:07 olass ok
15:07 maclean (something like that)
15:08 edrin this reminds me to a common test question in the first 2years of medicine in anatomy: they tended to ask... "Imagine you are a little bug, and you are sitting in the aorta ascendens... when you go up wards to the next branching... what are the names of the blood vessels there and where are they located?"
15:09 Gpox but you need to remove any old *cdk.index from your temp folder /tmp
15:11 olass never found any
15:11 olass Gpox
15:11 olass non e created for small_mols_drugbank....
15:11 edrin btw. do you know the answer?
15:12 Gpox in r8484 it removes the file if it exist when creating the index
15:12 maclean edrin : no idea.
15:13 edrin it is the truncus brachiocephalicus
15:13 olass Gpox: does all your entries in the drugbank file render?
15:13 olass mine on index 2,3,5,7,8 are not rendered at all
15:14 jonalv olass: I donät get that cyclic depenecy any longer...
15:14 olass good
15:15 maclean edrin : weirdly, if I google that, the top hit is from de.wikipedia.org :)
15:15 Gpox i dont think they have any structure
15:16 edrin maybe there is another name in english
15:16 jonalv olass: yea but I seem to get another exception now... Perhaps you could confirm that when you have a second?
15:16 edrin although it should be the same
15:16 maclean well, it's latin, so...
15:16 edrin because its latin
15:16 olass jonalv: not now
15:16 olass building
15:16 olass later
15:16 jonalv yup
15:33 egonw maclean: why did you not just ask me about cdk-taverna?
15:33 egonw I don't think a Taverna1 plugin is supposed to work with Taverna2
15:33 maclean egonw : thought you were busy with the release
15:33 maclean ohh.
15:34 egonw it's a completely different architecture
15:34 maclean thought that might be the case. curses.
15:34 olass I have not had time to update the welcome screen for bc2.0beta
15:34 * egonw is waiting for his headache to go away, and a Linux test download to arrive
15:34 olass please bear with me for this
15:34 olass egonw: see €farmbio
15:34 * maclean bears
15:35 * jonalv hatez windows
15:40 * egonw suggests to specmol and spectra data to be moved outside data.sampledata...
15:41 egonw but then again...
15:41 egonw maybe not...
15:41 edrin egonw: new Linux test download would correlate with headache
15:41 egonw very much
15:41 egonw fortunately I understand the difference between correlation and cause-effect
15:41 egonw that is
15:42 edrin heh
15:42 egonw headaches do *not* lead to bioclipse releases :)
15:42 jonalv where do Bioclipse save the log on a windows machine?
15:42 olass no idea
15:42 egonw ./bioclipse | tee bioclipse.log
15:42 olass doesn't it say in the begining: propable log file...
15:43 egonw would that work on OS/X?
15:43 maclean egonw: yes
15:43 jonalv egonw: on a windows machine!
15:43 egonw jonalv: ah... sorry, right
15:43 maclean jonalv: home directory, I think
15:43 maclean or My Documents
15:44 jonalv maclean: home directory? This is a Windows machine...
15:44 maclean I remember seeing it before, but my xp machine is not on atm.
15:44 maclean jonalv: home = C:\Documents And Settings\%username% or something
15:45 jonalv maclean: aha
15:46 jonalv you found it. thanks maclean
15:46 maclean no probs
15:57 egonw same file name?
16:00 olass yes
16:03 olass shk3: speclipse downloads and installs nicely with 2.0beta binary
16:03 olass how do I verify it starts?
16:04 egonw olass: spectra/ and specmol/ folder in sampledata
16:04 jonalv egonw, olass : is there a gist script that we are using for testing?
16:04 egonw no, not yet
16:04 egonw but I did use gist.load() for a quick test...
16:05 olass grrr
16:05 egonw what?
16:05 olass shk3: DON'T USE JAVA6
16:05 olass java.lang.UnsupportedClassVersionError: Bad version number in .class file
16:05 olass at java.lang.ClassLoader.defineClass1(Native Method)
16:05 olass at java.lang.ClassLoader.define​Class(ClassLoader.java:675)
16:05 olass I suspect Java6
16:05 olass shk3: sorry for shouting
16:06 olass can you please make 100% sure that you only have built with java5?
16:06 jonalv olass: I think things are working for me... gonna have a look at the log too
16:06 olass great
16:06 shk3 sorry
16:07 shk3 removed java 6 from workspace long ago
16:07 olass shk3: no prob, but please update the update site
16:07 shk3 yes
16:07 jonalv I have :
16:07 jonalv ERROR resources:95 - Could not acquire INavigatorContentService from part ("Welcome").
16:07 shk3 will do so in around 10 minutes
16:07 jonalv is that a problem?
16:07 olass Java6?
16:07 olass yes
16:08 egonw jonalv: I had that too, yesterday
16:08 olass that means I download Java6 compiled classes into my Java5 Bioclipse
16:08 egonw did not spot it today yet...
16:08 olass running on Java5 JVM
16:08 olass hmm, might not be a problem if you run Bioclikpse on Java6...
16:08 olass but on Mac this is not possible
16:10 egonw ./bioclipse | tee bioclipse.log | grep -v "^INFO"
16:12 shk3 has the biocliopse update site been updated?
16:12 maclean olass: I have java6 on my mac, can I test something for you?
16:12 olass soon
16:13 olass uploading to SF as we speak
16:13 shk3 great
16:13 olass maclean: there is no SWT version for Java6 on mac
16:13 olass I suspect it simply won't start
16:13 maclean oh
16:13 olass will be in Eclipse 3.5
16:14 maclean oh, right. I think we went through this last week. sorry.
16:14 * maclean has poor long-term memory :)
16:15 egonw Gpox: are the popup menu's working for you in the JCP editor
16:15 egonw I only get Validate CML
16:15 olass shk3: https://sourceforge.net/project/showfiles.​php?group_id=150681&amp;package_id=286282
16:15 olass maclean: too
16:16 olass linux version is uploading
16:16 shk3 going to update the update site
16:17 egonw olass: your linux zip does not seem to have the saveAs fix
16:18 olass hmm
16:18 olass ok
16:18 olass sorry, no time to fix this now
16:18 egonw yes, I understand
16:18 olass will be a good reason to test online updates with patches
16:18 egonw yes :)
16:22 maclean downloads, updates, seems to work.
16:27 shk3 no linux package at sourceforge?
16:27 maclean "olass: linux version is uploading"
16:28 olass sry
16:28 olass it takes time
16:28 olass 9 more minutes
16:29 shk3 upload in sf is very slow
16:29 shk3 i updated the update site
16:29 shk3 what worries me:
16:29 shk3 using the web browser, it only displays the old package
16:29 shk3 search for update in bioclipse only the new one
16:29 shk3 though that might be a feature
16:30 olass bioclispe update site is not operational yet
16:30 olass have not done that yet
16:32 olass building
16:32 egonw anything I can do?
16:32 * olass needs to catch the train very soon
16:33 olass http://bioclipse.blogspot.com/
16:33 zarah olass's link is also http://tinyurl.com/ce6etd
16:34 olass shk3: ok, try the new bc2 update site now
16:34 olass uploaded a new one
16:34 egonw huh?
16:34 egonw http://sorry.google.com/sorry/?cont​inue=http://bioclipse.blogspot.com/
16:34 zarah egonw's link is also http://tinyurl.com/d34ebb
16:34 egonw Google thinks bioclipse.blogspot.com is spyware??
16:34 olass saw that too
16:34 olass strange
16:35 shk3 looks good
16:35 shk3 ah, there is a "show latest version only" box
16:36 shk3 if I uncheck this both speclipse versions are displayed
16:37 shk3 testint the linux download
16:37 shk3 1 hour, 3 minutes remaining
16:37 shk3 for download
16:38 shk3 sorry, test might take a while
16:38 olass no prob
16:38 egonw damn... can't access the blog...
16:38 egonw so, who has been writing spamware to have the bioclipse blog pop up on random occassions on innocent old ladies desktops ?!?!
16:40 olass ok, linux version on SF
16:40 olass tried updating xmpp from update site
16:40 olass works to connect at least
16:41 olass no time to test more now
16:41 olass ok, release deon
16:41 olass done
16:41 olass https://sourceforge.net/project/showfiles.​php?group_id=150681&amp;package_id=286282
16:41 olass ok guys
16:42 olass File as many bugs as you can
16:42 shk3 i will tell you tomorrow if there are major problems with the linux version
16:42 olass works with egon
16:42 shk3 ah, good to know
16:42 olass all discussions on bioclispe-devel please
16:42 olass but email me directly if release seem to be broken in some way
16:43 olass (that is my responsibility)
16:43 jonalv WTF, Why the fuck is google stopping me from surfing to http://bioclipse.blogspot.com/?!
16:43 zarah jonalv's link is also http://tinyurl.com/ca537j
16:43 olass jonalv: can you report that to google?
16:43 olass really bad...
16:43 olass anyway
16:43 olass gotta run
16:43 egonw jonalv: same here
16:43 olass have a nice weekend
16:43 egonw olass: bye!
16:43 egonw olass++
16:43 olass bye all, see you on monday afternoon
16:43 egonw for the release
16:43 olass :-)
16:43 egonw see you in 10 days
16:43 shk3 have a nice weekend
16:44 egonw his train leaves in 20 minutes :)
16:45 shk3 no problem by bike
16:46 shk3 might be tricky by feet
16:46 egonw he has a bike
16:46 egonw and only sometimes a flat tire/tier
16:46 egonw ?
16:47 egonw masak: where are you when I need you to make fun of me ?!?!
17:03 maclean left #bioclipse
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18:02 CIA-54 bioclipse: shk3 * r8488 /bioclipse2/trunk/features/net.biocl​ipse.speclipse_feature/feature.xml: removed dependencies
18:11 edrin left #bioclipse

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