| Time |
S |
Nick |
Message |
| 05:38 |
|
|
masak joined #bioclipse |
| 07:32 |
|
|
Gpox joined #bioclipse |
| 07:47 |
|
CIA-55 |
bioclipse: egonw * r8907 /bioclipse2/trunk/plugins/net.bioclipse.cdk.business/src/net/bioclipse/cdk/domain/CDKMoleculePropertySource.java: Added additional properties (fixes #515 and #519) |
| 07:47 |
|
zarah |
bug #515 | http://tinyurl.com/colx6d |
| 07:48 |
|
CIA-55 |
bioclipse: egonw * r8908 /bioclipse2/trunk/plugins/net.bioclipse.cdk.business/src/net/bioclipse/cdk/business/CDKManager.java: Use a four digit precision |
| 08:10 |
|
|
rojasm joined #bioclipse |
| 08:55 |
|
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rojasm joined #bioclipse |
| 09:07 |
|
CIA-55 |
bioclipse: carl_masak * r8909 /bioclipse2/trunk/plugins/net.bioclipse.scripting.ui/src/net/bioclipse/scripting/ui/business/JsConsoleManager.java: |
| 09:07 |
|
CIA-55 |
bioclipse: [JsConsoleManager] replaced a "\n" with NEWLINE |
| 09:07 |
|
CIA-55 |
bioclipse: Also added a comment after "\r\n" about why it cannot be similarly replaced. |
| 09:10 |
|
masak |
@pz comment |
| 09:10 |
|
zarah |
[468] Writing generated 3d coordinate... http://tinyurl.com/bzv583 |
| 09:10 |
|
zarah |
[469] Save as dialog when saving gene... http://tinyurl.com/bwgkja |
| 09:10 |
|
zarah |
[78] CR/LF problems on windows http://tinyurl.com/6eznsa |
| 09:10 |
|
zarah |
[1] There are people not using Bioclipse http://tinyurl.com/55k8wf |
| 09:10 |
|
zarah |
[475] Decide if ActionHistoryView sho... http://tinyurl.com/amp4rs |
| 09:10 |
|
zarah |
Entire list (29) at http://tinyurl.com/cxnzrs |
| 09:15 |
|
|
shk3 joined #bioclipse |
| 09:20 |
|
|
rojasm joined #bioclipse |
| 09:24 |
|
|
jonalv joined #bioclipse |
| 09:25 |
|
jonalv |
hi |
| 09:27 |
|
sneumann |
morning |
| 09:27 |
|
CIA-55 |
bioclipse: carl_masak * r8910 /bot/trunk/zarah.pl: |
| 09:27 |
|
CIA-55 |
bioclipse: Revert "[zarah] now doesn't greet people back if they spoke recently" |
| 09:27 |
|
CIA-55 |
bioclipse: This reverts commit 12a7cb7080ae67554ff638211b70998938028fd8. Turns out |
| 09:27 |
|
CIA-55 |
bioclipse: the effect was that zarah didn't greet anyone, and people missed the |
| 09:27 |
|
CIA-55 |
bioclipse: functionality. |
| 09:27 |
|
|
zarah joined #bioclipse |
| 09:35 |
|
jonalv |
masak: |
| 09:35 |
|
masak |
yeeees? |
| 09:35 |
|
masak |
what is it? :) |
| 09:35 |
|
jonalv |
@pz 468 |
| 09:35 |
|
masak |
come on! |
| 09:35 |
|
zarah |
http://pele.farmbio.uu.se/cgi-[…]ow_bug.cgi?id=468 |
| 09:35 |
|
jonalv |
masak: can you comment? |
| 09:36 |
|
jonalv |
see the long discussion... |
| 09:37 |
|
masak |
I guess I could comment, but it seems that you are perfectly capable of generating red tape on your own here... |
| 09:37 |
|
masak |
maybe you should elect a committee to investigate standards for assigning tickets. |
| 09:38 |
|
masak |
so that this atrocity does not occur again, I mean. |
| 09:39 |
|
* masak |
wishes Bugzilla were a bit more like RT |
| 09:55 |
|
shk3 |
sorry for trouble |
| 09:55 |
|
shk3 |
I fixed that |
| 09:56 |
|
shk3 |
forgot to mark as fixed |
| 09:57 |
|
masak |
shk3: if it wasn't clear, I wasn't entirely serious above. |
| 09:57 |
|
masak |
I don't consider the incident an atrocity. |
| 09:57 |
|
shk3 |
well, it still was confusing |
| 09:57 |
|
masak |
indeed. |
| 09:58 |
|
shk3 |
hm, it seems you have to reassign first |
| 09:58 |
|
shk3 |
and then mark as fixed |
| 09:58 |
|
* masak |
doesn't think so |
| 09:58 |
|
shk3 |
well, I can't reassign now |
| 10:00 |
|
shk3 |
ok, you got it again |
| 10:00 |
|
shk3 |
please check if it works |
| 10:01 |
|
shk3 |
btw, working on undo redo in jcp right now |
| 10:01 |
|
shk3 |
it's a bit tricky, but getting there |
| 10:02 |
|
shk3 |
hopefully I will send an email around noon explaining the concept |
| 10:06 |
|
|
edrin joined #bioclipse |
| 10:07 |
|
|
olass joined #bioclipse |
| 10:08 |
|
olass |
moin |
| 10:08 |
|
zarah |
ni hao olass |
| 10:08 |
|
olass |
zarah: botsnack |
| 10:08 |
|
zarah |
;) |
| 10:08 |
|
olass |
zarah: who is the smart one? |
| 10:08 |
|
zarah |
olass: I'm just a bot, you expect me to understand that? |
| 10:08 |
|
olass |
zarah: ok, not you at least |
| 10:08 |
|
zarah |
olass: I'm just a bot, you expect me to understand that? |
| 10:12 |
|
masak |
zarah: don't mind him. he's just making fun of you. |
| 10:12 |
|
zarah |
masak: please rephrase or stop trying to be witty :) |
| 10:23 |
|
olass |
zarah: you are the dumb one |
| 10:23 |
|
zarah |
olass: no, YOU are the dumb one! :) |
| 10:23 |
|
olass |
zarah: no |
| 10:23 |
|
zarah |
olass: I see. |
| 10:26 |
|
jonalv |
@pz |
| 10:26 |
|
zarah |
jonalv: Pelezilla is at http://bugs.bioclipse.net |
| 10:26 |
|
|
egonw joined #bioclipse |
| 10:26 |
|
jonalv |
bugs.bioclipse.net |
| 10:26 |
|
jonalv |
bioclipse.net |
| 10:27 |
|
masak |
net |
| 10:27 |
|
* masak |
|
| 10:33 |
|
jonalv |
@pz proofreading |
| 10:33 |
|
zarah |
jonalv: Zarro boogs found. |
| 10:33 |
|
jonalv |
@pz proof reading |
| 10:33 |
|
zarah |
jonalv: I couldn't find anything on 'proof reading' in the database. |
| 10:33 |
|
jonalv |
zarah: you suck! |
| 10:33 |
|
zarah |
jonalv: I did not understand that |
| 10:34 |
|
jonalv |
:) |
| 10:34 |
|
masak |
@pz proofread |
| 10:34 |
|
zarah |
[403] Proofread and extend documentat... http://tinyurl.com/b3sdg5 |
| 10:34 |
|
zarah |
Entire list at http://tinyurl.com/dmogv2 |
| 10:42 |
|
jonalv |
@pz wel;vome site |
| 10:42 |
|
zarah |
[273] Validate CML actions shows ever... http://tinyurl.com/cfvur5 |
| 10:42 |
|
zarah |
[292] Update Welcome and Help http://tinyurl.com/cnd7ky |
| 10:42 |
|
zarah |
[25] Delete button does nothing in Bi... http://tinyurl.com/at93pw |
| 10:42 |
|
zarah |
[45] Bioclipse system icons http://tinyurl.com/bxxc9k |
| 10:42 |
|
zarah |
[24] Simplify sampledata installation http://tinyurl.com/5z6fej |
| 10:42 |
|
zarah |
Entire list (13) at http://tinyurl.com/bvl7w6 |
| 10:42 |
|
jonalv |
@pz welcome page |
| 10:42 |
|
zarah |
[24] Simplify sampledata installation http://tinyurl.com/5z6fej |
| 10:42 |
|
zarah |
[412] Links to help do not open navig... http://tinyurl.com/bers8k |
| 10:42 |
|
zarah |
Entire list at http://tinyurl.com/djj3ly |
| 10:43 |
|
|
olass joined #bioclipse |
| 10:44 |
|
olass |
egonw: lunch |
| 10:44 |
|
jonalv |
hi olass |
| 10:44 |
|
egonw |
OK |
| 10:44 |
|
olass |
hi jonalv |
| 10:47 |
|
CIA-55 |
bioclipse: carl_masak * r8911 /bot/trunk/zarah.pl: [zarah] now says "you're welcome" when @thank-ed |
| 11:52 |
|
CIA-55 |
bioclipse: goglepox * r8912 /bioclipse2/trunk/plugins/net.bioclipse.cdk.ui.sdfeditor/plugin.xml: Removed matching strategy fixes bug #524 |
| 11:52 |
|
zarah |
bug #524 | http://tinyurl.com/aos8qc |
| 11:53 |
|
CIA-55 |
bioclipse: goglepox * r8913 /bioclipse2/trunk/plugins/ (3 files in 2 dirs): Changes due to selectin now contains CDKChemObjects |
| 11:53 |
|
CIA-55 |
bioclipse: goglepox * r8914 /bioclipse2/trunk/plugins/net.bioclipse.cdk.jchempaint/src/net/bioclipse/cdk/jchempaint/editor/SWTMouseEventRelay.java: Changed to not react on Ctrl-click from macBooks bug #445 |
| 11:53 |
|
zarah |
bug #445 | http://tinyurl.com/bddfwo |
| 12:05 |
|
masak |
:q |
| 12:06 |
|
masak |
(oops, mistype) |
| 12:19 |
|
jonalv |
jolt++ |
| 12:20 |
|
masak |
karma jolt |
| 12:20 |
|
zarah |
jolt has a karma of 1 |
| 12:20 |
|
masak |
karma big_hairy_monkies |
| 12:20 |
|
zarah |
big_hairy_monkies has a karma of 0 |
| 12:20 |
|
masak |
big_hairy_monkies-- |
| 12:21 |
|
jonalv |
when_fluffy_bunnies_attack++ |
| 12:21 |
|
masak |
http://www.bushorchimp.com/ |
| 12:21 |
|
jonalv |
@gg when fluffy bunnies atack magic |
| 12:21 |
|
zarah |
jonalv: http://www.wizards.com/magic/m[…]mtgcom/arcana/696 |
| 12:24 |
|
masak |
jonalv: http://harpers.org/archive/2009/01/0082319 |
| 12:24 |
|
zarah |
masak's link is also http://tinyurl.com/72u35p |
| 12:26 |
|
CIA-55 |
bioclipse: carl_masak * r8915 /bioclipse2/trunk/plugins/net.bioclipse.scripting.ui/src/net/bioclipse/scripting/ui/views/JsConsoleView.java: [JsConsoleView] manager methods are now only found once |
| 12:26 |
|
jonalv |
carl_masak++ |
| 12:26 |
|
masak |
karma carl_masak |
| 12:26 |
|
zarah |
carl_masak has a karma of 1 |
| 12:26 |
|
masak |
poor guy. :) |
| 12:34 |
|
masak |
jonalv: |
| 12:34 |
|
masak |
@pz 534 |
| 12:34 |
|
zarah |
http://pele.farmbio.uu.se/cgi-[…]ow_bug.cgi?id=534 |
| 12:35 |
|
egonw |
Gpox: ping |
| 12:36 |
|
Gpox |
egonw: pong |
| 12:36 |
|
egonw |
Gpox: what folder should I be using instead of /Virtual? |
| 12:36 |
|
egonw |
I only see /Virtual |
| 12:38 |
|
Gpox |
there is only virtual |
| 12:39 |
|
egonw |
oh, OK |
| 12:40 |
|
egonw |
excellent |
| 12:40 |
|
egonw |
that makes things easier :) |
| 12:43 |
|
CIA-55 |
bioclipse: goglepox * r8916 /bioclipse2/trunk/plugins/net.bioclipse.cdk.jchempaint.view/src/net/bioclipse/cdk/jchempaint/view/SWTRenderer.java: Changed alignement direction for hydrogens |
| 12:46 |
|
jonalv |
Gpox++ |
| 12:53 |
|
jonalv |
Why do I want N to be green? Where have I pickud such bad ideas? |
| 12:56 |
|
jonalv |
edrin, olass: Is the new JS-editor in the net.bioclipse_feature? |
| 12:57 |
|
egonw |
jonalv: N should be blue |
| 12:57 |
|
egonw |
Cl should be green |
| 12:57 |
|
olass |
jonalv: yes |
| 13:00 |
|
jonalv |
olass: hm why don't I have it then? :/ |
| 13:01 |
|
olass |
jonalv: ask zarah and you get a suitable answer |
| 13:01 |
|
olass |
zarah: why haven't jonalv updated? |
| 13:01 |
|
zarah |
olass: you've just exceeded my capabilities :/ |
| 13:01 |
|
CIA-55 |
bioclipse: goglepox * r8917 /bioclipse2/trunk/plugins/net.bioclipse.cdk.jchempaint/src/net/bioclipse/cdk/jchempaint/widgets/JChemPaintEditorWidget.java: Uses SWT.COLOR_LIST_SELECTION for selection color in JCP |
| 13:01 |
|
olass |
jonalv: you see? |
| 13:02 |
|
jonalv |
olass: you lost me... |
| 13:02 |
|
olass |
:-) |
| 13:02 |
|
olass |
git rebase-merge-update-index-hash-blob-ish |
| 13:03 |
|
* olass |
uses svn |
| 13:03 |
|
egonw |
[14:02:54] <olass> git rebase-merge-update-index-hash-blob-ish |
| 13:03 |
|
egonw |
<- you've given yourself away now |
| 13:03 |
|
olass |
? |
| 13:03 |
|
egonw |
you sneaky bastard... just been using git all the time already! |
| 13:03 |
|
olass |
mohaha |
| 13:03 |
|
egonw |
making us believe you were still with svn... |
| 13:03 |
|
* olass |
read a tutorial on the plane |
| 13:04 |
|
olass |
git from the bottom up |
| 13:04 |
|
olass |
nic earticle btw |
| 13:04 |
|
egonw |
nice pictures? |
| 13:04 |
|
olass |
grmpf |
| 13:04 |
|
olass |
yes |
| 13:04 |
|
olass |
Me CAN read too |
| 13:04 |
|
egonw |
nothing as nice as a good diagram |
| 13:04 |
|
* olass |
|
| 13:04 |
|
egonw |
particularly for rebase |
| 13:05 |
|
egonw |
:) |
| 13:05 |
|
* olass |
thinks of freebase when seeing rebase |
| 13:05 |
|
egonw |
using freebase? |
| 13:05 |
|
egonw |
I have not made up my mind about it... |
| 13:06 |
|
jonalv |
olass++ //can read, (too) |
| 13:06 |
|
jonalv |
;) |
| 13:07 |
|
olass |
*murmel* |
| 13:07 |
|
masak |
olass++ |
| 13:07 |
|
olass |
@thank masak and jonalv |
| 13:07 |
|
zarah |
masak: olass says thank you |
| 13:07 |
|
masak |
:) |
| 13:07 |
|
olass |
zarah: and jonalv? |
| 13:07 |
|
zarah |
olass: that was not so easy for a little bot to understand |
| 13:08 |
|
jonalv |
zarah: I think you forgot me.. :( |
| 13:08 |
|
zarah |
jonalv: please rephrase or stop trying to be witty :) |
| 13:09 |
|
masak |
zarah: slap jonalv |
| 13:09 |
|
* zarah |
smashes a lamp on jonalv's head |
| 13:09 |
|
masak |
:D |
| 13:09 |
|
olass |
zarah: easy sister |
| 13:09 |
|
zarah |
olass: please rephrase or stop trying to be witty :) |
| 13:09 |
|
jonalv |
@thank zarah |
| 13:09 |
|
zarah |
zarah: jonalv says thank you |
| 13:09 |
|
egonw |
zarah: please be careful with the furniture |
| 13:09 |
|
zarah |
egonw: eh... wha'? |
| 13:09 |
|
egonw |
zarah: you beast |
| 13:09 |
|
zarah |
egonw: excuse me? |
| 13:09 |
|
egonw |
that's better |
| 13:09 |
|
masak |
zarah: reboot now! |
| 13:10 |
|
olass |
*phew* |
| 13:10 |
|
olass |
she was getting mad |
| 13:10 |
|
|
zarah joined #bioclipse |
| 13:10 |
|
olass |
zarah: better now? |
| 13:10 |
|
zarah |
olass: that was not so easy for a little bot to understand |
| 13:10 |
|
olass |
:-( |
| 13:10 |
|
masak |
zarah: thank you |
| 13:10 |
|
zarah |
masak: no, YOU'RE the cute one! :) |
| 13:10 |
|
masak |
:) |
| 13:10 |
|
masak |
@thank you |
| 13:10 |
|
zarah |
masak: no, YOU'RE the cute one! :) |
| 13:10 |
|
masak |
hm. |
| 13:10 |
|
jonalv |
olass: I have updated now. I still don't have the js-editor. What am I doing wrong? |
| 13:11 |
|
olass |
using git? |
| 13:11 |
|
jonalv |
olass: what does that have to do with anything? |
| 13:11 |
|
masak |
olass: oh, be nice. :) |
| 13:11 |
|
jonalv |
olass: don't go blaming the messanger now |
| 13:11 |
|
olass |
ok ok, I'll look at it |
| 13:12 |
|
egonw |
jonalv: you can check the SVN repos via the SF website |
| 13:12 |
|
jonalv |
egonw: yes? |
| 13:12 |
|
olass |
this is what feature.xml says for net.bc_feature |
| 13:12 |
|
egonw |
than you can check if it is your fault, or git-svn or svn repos |
| 13:12 |
|
olass |
<plugin |
| 13:12 |
|
olass |
id="net.bioclipse.jseditor" |
| 13:12 |
|
olass |
download-size="0" |
| 13:12 |
|
olass |
install-size="0" |
| 13:12 |
|
olass |
version="0.0.0" |
| 13:12 |
|
olass |
unpack="false"/> |
| 13:12 |
|
olass |
so it IS there |
| 13:13 |
|
olass |
please check any error messages when starting |
| 13:13 |
|
olass |
so to see if you have a dependency problem |
| 13:13 |
|
jonalv |
hm oki doing that |
| 13:14 |
|
olass |
adding extra deps |
| 13:14 |
|
olass |
just in case |
| 13:14 |
|
olass |
but should run without them |
| 13:14 |
|
CIA-55 |
bioclipse: ospjuth * r8918 /bioclipse2/trunk/features/net.bioclipse_feature/feature.xml: Added 2 deps for jseditor console. |
| 13:14 |
|
jonalv |
no errors |
| 13:14 |
|
olass |
strange |
| 13:14 |
|
olass |
binaty version? |
| 13:15 |
|
jonalv |
sry? |
| 13:15 |
|
olass |
are you running binary version or from Eclipse? |
| 13:15 |
|
jonalv |
what do you mean? binary version? Ah yea I am running from head |
| 13:15 |
|
jonalv |
from within Eclipse |
| 13:15 |
|
egonw |
jonalv, masak: is it OK to have a manager method return int[]? |
| 13:15 |
|
masak |
hm... |
| 13:15 |
|
egonw |
should I be using List<Integer> maybe? |
| 13:16 |
|
olass |
are you running a binary build downloaded from SF or running a just-in-time compiled version from clicking the "run" button in Eclipse? |
| 13:16 |
|
olass |
checked out from SVN? |
| 13:16 |
|
jonalv |
olass: the second |
| 13:16 |
|
olass |
or GIT? |
| 13:16 |
|
jonalv |
git :) |
| 13:16 |
|
masak |
egonw: I'd do List<Integer> unless there was a good reason to do otherwise. |
| 13:16 |
|
olass |
jonalv: what is the first? |
| 13:16 |
|
olass |
SVN? |
| 13:16 |
|
egonw |
masak: OK, was not sure JS would be happy about that... |
| 13:16 |
|
olass |
GIT was mentioned second |
| 13:16 |
|
jonalv |
olass: a binary build from SF |
| 13:16 |
|
masak |
egonw: I haven't tried, so I don't really know. |
| 13:17 |
|
olass |
no JS editor? |
| 13:17 |
|
olass |
:-( |
| 13:17 |
|
olass |
:-( |
| 13:17 |
|
egonw |
jonalv: one for you... I have a method search(String query) and a matching search(String query, IProgressMonitor monitor)... that fine? |
| 13:17 |
|
olass |
in win or mac? |
| 13:17 |
|
jonalv |
olass: mac |
| 13:17 |
|
jonalv |
egonw: seems fine. What manager? |
| 13:17 |
|
egonw |
PubChemManager |
| 13:18 |
|
egonw |
IPubChemManager |
| 13:18 |
|
olass |
tested a freshly downloaded binary beta2 from SF and I get JSEditor here |
| 13:18 |
|
olass |
jonalv: so you are wrong :-) |
| 13:19 |
|
jonalv |
egonw: oh never heard of that one. Have you made it according to the cdk manager receipe or? |
| 13:19 |
|
egonw |
gist recipe |
| 13:19 |
|
jonalv |
olass: yea I got it in the beta 2 release too but not when I a running from trunk from within Eclipse |
| 13:19 |
|
olass |
jonalv: come here and see for yourself |
| 13:19 |
|
olass |
good |
| 13:20 |
|
jonalv |
olass: come here and see for yourself |
| 13:55 |
|
jonalv |
olass, egonw, shk3 DO we still need the outdated folder? |
| 13:55 |
|
jonalv |
...or perhaps someone else knows something? |
| 13:59 |
|
shk3 |
which folder are you talking about? |
| 14:02 |
|
egonw |
jonalv: yes |
| 14:02 |
|
egonw |
jonalv: AFAIK, not everything has been replaced yet |
| 14:02 |
|
egonw |
e.g. the reaction plugins |
| 14:04 |
|
jonalv |
egonw: okey, I am looking forward to the day when we don't need that one... |
| 14:04 |
|
shk3 |
ah, you talk about svn |
| 14:06 |
|
shk3 |
did anybody get my email about undo/redo from about 2h ago |
| 14:06 |
|
shk3 |
? |
| 14:06 |
|
shk3 |
looks like this doesn't get through |
| 14:07 |
|
shk3 |
sent to to bc-devel and cdk-jcp |
| 14:07 |
|
jonalv |
shk3: no I don't think I have gotten anything.. |
| 14:08 |
|
shk3 |
hm |
| 14:08 |
|
shk3 |
will resend it |
| 14:09 |
|
egonw |
shk3: about the old class? |
| 14:09 |
|
egonw |
just replied to that one |
| 14:09 |
|
shk3 |
no, about the new classes |
| 14:09 |
|
shk3 |
at least the one to cdk-jcp now arrived |
| 14:09 |
|
egonw |
I had not received those yet, AFAIK |
| 14:09 |
|
egonw |
just the ones that arrived 0min ago |
| 14:10 |
|
shk3 |
resent the other one 1 min ago |
| 14:10 |
|
shk3 |
lets wait |
| 14:13 |
|
shk3 |
got it via bc-devel as well now |
| 14:13 |
|
shk3 |
and right now, the one sent 12:03 arrived as well |
| 14:20 |
|
masak |
egonw: re r8908, what's the reason for rounding? |
| 14:20 |
|
egonw |
because it makes no sense to be more precise |
| 14:21 |
|
egonw |
not in chemistry |
| 14:21 |
|
egonw |
and makes it less readable |
| 14:22 |
|
masak |
if it has to do with readability when outputting, dividing is not a foolproof way to make sure that you get a readable result. |
| 14:23 |
|
egonw |
patches always welcome |
| 14:24 |
|
masak |
egonw: sure, but I need to understand the domain first. |
| 14:24 |
|
masak |
specifically, where this number is used. |
| 14:25 |
|
masak |
I believe this is the Java way to round things: http://java.sun.com/j2se/1.5.0[…]NumberFormat.html |
| 14:25 |
|
zarah |
masak's link is also http://tinyurl.com/zv5jf |
| 14:25 |
|
|
julio joined #bioclipse |
| 14:25 |
|
|
julio left #bioclipse |
| 14:27 |
|
egonw |
gilleain++ (for the cleanup() patch) |
| 14:27 |
|
jonalv |
egonw: why does it say EXPERIMENTAL after jchempaint in pelezilla? |
| 14:27 |
|
egonw |
because it was rather EXPERIMENTAL... |
| 14:27 |
|
jonalv |
egonw: isn't jchempaint in the bheta release? |
| 14:28 |
|
egonw |
I guess we can start consider removing it now... |
| 14:28 |
|
egonw |
maybe call it beta or so ;) |
| 14:28 |
|
jonalv |
egonw: oki... |
| 14:28 |
|
jonalv |
or just jchempaint? |
| 14:28 |
|
egonw |
oh, wait... that's a good idea :) |
| 14:29 |
|
jonalv |
good :) |
| 14:30 |
|
egonw |
jonalv: done |
| 14:50 |
|
egonw |
http://www.ozonehouse.com/mark/periodic/ |
| 14:50 |
|
zarah |
egonw's link is also http://tinyurl.com/cgmm4w |
| 14:50 |
|
egonw |
"Periodic Table of the Operators" |
| 14:50 |
|
egonw |
the Noble Metaops :) |
| 14:51 |
|
masak |
egonw: I contacted the guy a month or so ago, and he updated it. |
| 14:51 |
|
masak |
he's been dropping by on #perl6 now and then to ask questions. |
| 14:52 |
|
masak |
Larry Wall changed a few operators around due to some discussions that arose because of his work. |
| 14:52 |
|
egonw |
good :) |
| 14:52 |
|
egonw |
nothing as nice as symmetry |
| 14:52 |
|
masak |
that's not the first thing that comes to mind when thinking of the Perl 6 operators, though :) |
| 14:53 |
|
* egonw |
is heading home now |
| 14:53 |
|
egonw |
bbl |
| 15:32 |
|
* jonalv |
never reaches the js-editor. He just keeps finding more jchempaint bugs... |
| 15:33 |
|
masak |
jonalv++ |
| 15:45 |
|
|
egonw joined #bioclipse |
| 15:48 |
|
CIA-55 |
bioclipse: egonw * r8919 /bioclipse2/trunk/plugins/net.bioclipse.pubchem/ (15 files in 7 dirs): Copied the PubChem plugin from BC1 |
| 15:49 |
|
CIA-55 |
bioclipse: egonw * r8920 /bioclipse2/trunk/plugins/net.bioclipse.pubchem/src/net/bioclipse/wizards/NewFromPubChemWizard.java: Added missing copyright/license header |
| 15:49 |
|
CIA-55 |
bioclipse: egonw * r8921 /bioclipse2/trunk/plugins/net.bioclipse.pubchem/ (10 files in 6 dirs): |
| 15:49 |
|
CIA-55 |
bioclipse: Cleanup: |
| 15:49 |
|
CIA-55 |
bioclipse: * proper package names |
| 15:49 |
|
CIA-55 |
bioclipse: * missing copyright notices (extract from svn logs in bioclipse/) |
| 15:50 |
|
CIA-55 |
bioclipse: egonw * r8922 /bioclipse2/trunk/plugins/net.bioclipse.pubchem/ (11 files in 6 dirs): |
| 15:50 |
|
CIA-55 |
bioclipse: Added manager: |
| 15:50 |
|
CIA-55 |
bioclipse: * working loadCompound |
| 15:50 |
|
CIA-55 |
bioclipse: * template search |
| 15:50 |
|
CIA-55 |
bioclipse: Wizard is not working yet, and needs to be rewritten to use the above, once the search code has been transfered. |
| 16:15 |
|
jonalv |
@tell edrin You have a new bug with number 551 in pelezilla :) |
| 16:15 |
|
zarah |
Consider it noted. |
| 16:15 |
|
edrin |
@pz 551 |
| 16:15 |
|
zarah |
http://pele.farmbio.uu.se/cgi-[…]ow_bug.cgi?id=551 |
| 16:15 |
|
zarah |
edrin: You have new messages. Write '/msg zarah @messages' to read them. |
| 16:15 |
|
edrin |
@msg |
| 16:15 |
|
zarah |
edrin: 20 s ago, jonalv said You have a new bug with number 551 in pelezilla :) |
| 16:16 |
|
edrin |
jonalv: I dont understand this bug, what did you do? |
| 16:16 |
|
jonalv |
edrin: good question. Nothing |I think... |
| 16:17 |
|
edrin |
when did the error occur ? |
| 16:17 |
|
jonalv |
but I don't understand it either... |
| 16:17 |
|
edrin |
did you run a scipt? |
| 16:17 |
|
jonalv |
I just imported it. I haven't had it imported in my workspace before. |
| 16:18 |
|
edrin |
oh |
| 16:18 |
|
edrin |
jonalv: can you rebuild your workspace? |
| 16:18 |
|
jonalv |
edrin: it didn't help... |
| 16:19 |
|
jonalv |
edrin: do you have any idea? |
| 16:19 |
|
edrin |
was ther scripting plugin changed in the meantime? is it up to date on your eclipse checkout? The method enterContext() is undefined for the type ContextFactory <- this is solely rhino API, |
| 16:20 |
|
jonalv |
everything should be up to date here... |
| 16:21 |
|
edrin |
Context cx = ContextFactory.getGlobal().enterContext(); <- this is rhino API only |
| 16:21 |
|
jonalv |
okey but what could have gone wrong? |
| 16:22 |
|
edrin |
most likely it is a workspace problem, the only other case could be, in my opinion, that the rhino js.jar was changed or not properly exported in net.bioclipse.scripting |
| 16:23 |
|
jonalv |
hm seems I have a js.jar too much... |
| 16:23 |
|
edrin |
too much? |
| 16:23 |
|
jonalv |
it has grabbed the js.jar from my Eclipse installation |
| 16:23 |
|
jonalv |
is that the wrong version? |
| 16:23 |
|
edrin |
ah ok |
| 16:23 |
|
edrin |
most likely |
| 16:24 |
|
jonalv |
We need to add a min version to that dep then. I will do that |
| 16:24 |
|
edrin |
it should use the one of net.bioclipse.scripting |
| 16:24 |
|
edrin |
ok |
| 16:24 |
|
edrin |
thanks |
| 16:25 |
|
jonalv |
edrin: you wouldn't happend to remember the version? |
| 16:25 |
|
jonalv |
I can't find the jar... :/ |
| 16:26 |
|
edrin |
Rhino 1.7R1 is the most recent qualified release. <- this one |
| 16:27 |
|
jonalv |
I can't specify that version |
| 16:27 |
|
jonalv |
I can specify 1.7.0 |
| 16:28 |
|
jonalv |
let's see if that works |
| 16:29 |
|
jonalv |
gah there is no version information exported |
| 16:29 |
|
edrin |
oh :/ |
| 16:30 |
|
edrin |
unfortunately the API of 1.7 changed a bit compared to 1.6 |
| 16:30 |
|
jonalv |
maybe a hard dep to that plugin can enforce it? |
| 16:30 |
|
jonalv |
best would be to add version information but that would mean that I really need to know the _exact_ version in the scripting plugin |
| 16:32 |
|
jonalv |
okey a hard dep net.bioclipse.jseditor -> net.bioclispe.scripting did the trick |
| 16:32 |
|
jonalv |
anyone have anything against that? olass? masak? edrin? |
| 16:33 |
|
edrin |
hm... |
| 16:34 |
|
edrin |
jonalv: why is rhino in eclipse imports |
| 16:34 |
|
jonalv |
edrin: what do you mean? Eclispe imoirts? |
| 16:34 |
|
edrin |
yes? |
| 16:34 |
|
* masak |
does not have anything against that |
| 16:34 |
|
edrin |
yes! |
| 16:34 |
|
jonalv |
edrin: you lost me... |
| 16:36 |
|
edrin |
jonalv: if there is no other way to make it running for you we can change it. i do not like it so much as the editor would fully work in eclipse itself this way, too. |
| 16:37 |
|
jonalv |
edrin: okey, then it would be better to just import a js but it is very important to have the version numbering correct in that case |
| 16:37 |
|
edrin |
jonalv: i think rhino should not be part of the eclipse packages |
| 16:37 |
|
edrin |
jonalv: yes, i know |
| 16:38 |
|
jonalv |
edrin: rhino is a part of net.bioclispe.scripting doesn't that make sence? |
| 16:38 |
|
edrin |
jonalv: we have to expect a conflict if another bc plugin exports an old version of rhino, but is rhino really as part of eclipse? |
| 16:39 |
|
jonalv |
edrin: I found a rhino jar in my Eclipse yes |
| 16:39 |
|
edrin |
very strange |
| 16:39 |
|
jonalv |
Most things end up there... |
| 16:39 |
|
edrin |
did you install this monkey thing? |
| 16:40 |
|
edrin |
these packages should not end up in bc? |
| 16:40 |
|
edrin |
hm |
| 16:40 |
|
jonalv |
enforcing versions by making sure that no jar with another version number is around is probably not the best way... |
| 16:40 |
|
jonalv |
edrin: what monkey thing? |
| 16:41 |
|
edrin |
jonalv: could it be that the "required plugins" in the run dialog were not calculated properly when you run your bc instance and it imported some strange eclipse plugin beside net.bioclipse.scripting? |
| 16:41 |
|
jonalv |
edrin: yea that is exactly what happend |
| 16:41 |
|
jonalv |
since there was no version on the javascript import |
| 16:41 |
|
jonalv |
so it just took one, which should be okey |
| 16:41 |
|
edrin |
jonalv: there are some rhino based plugins around for eclipse IDE with scripting support |
| 16:42 |
|
jonalv |
but we need the latest version of js |
| 16:42 |
|
jonalv |
so we need an import with a specified version |
| 16:42 |
|
edrin |
jonalv: ok, then uncheck the wrong one, these packages should not end up in the bc standalone app anyway, correct? |
| 16:42 |
|
jonalv |
question is just: how do we find out what version the js.jar in net.bioclispe.scripting is. It does not say anything about that... |
| 16:43 |
|
jonalv |
edrin: I can't just uncheck it. That's not the way to do things |
| 16:43 |
|
edrin |
jonalv: i think there is no way to do this |
| 16:43 |
|
jonalv |
imports that are version critical should specify versions |
| 16:43 |
|
edrin |
sorry :/ |
| 16:44 |
|
jonalv |
rhino seems like a more and more terribly bad run project in that case |
| 16:44 |
|
jonalv |
it works for every other project why can't the prople writing rhino do it right? |
| 16:45 |
|
jonalv |
edrin: We can do this in one of two ways |
| 16:45 |
|
jonalv |
1. have a direct dep to net.bioclispe.scripting |
| 16:45 |
|
edrin |
jonalv: one way would be to 1) not re-export js.jar from net.bioclipse.scripting + 2) add a js.jar to .jseditor plugin. this would result in not too much space i guess... |
| 16:45 |
|
jonalv |
2. have a versioned import of a js.jar into the editor plugin |
| 16:45 |
|
jonalv |
choose one |
| 16:46 |
|
jonalv |
okey that's a thiord alternative but olass will not like that one... |
| 16:46 |
|
jonalv |
masak: can you comment on this? |
| 16:46 |
|
edrin |
i know ;) |
| 16:47 |
|
edrin |
but it's not too worse in my opinion |
| 16:47 |
|
edrin |
js.jar is not too big |
| 16:47 |
|
masak |
I haven't been following the discussion, but instinctively I don't think we should have several js.jar files. |
| 16:47 |
|
masak |
or even several ways to call js. |
| 16:47 |
|
jonalv |
me neither |
| 16:48 |
|
edrin |
it is 739 kb |
| 16:48 |
|
masak |
the rogue js setup solution in the js editor is a temporary solution in my eyes |
| 16:48 |
|
masak |
I'll try and refactor it so that it uses the js env. |
| 16:49 |
|
edrin |
masak: why is that necessary ? |
| 16:50 |
|
edrin |
masak: right now the jseditor is running standalone, it's not good to increase dependencies, especially when they are not required |
| 16:50 |
|
masak |
edrin: I disagree. |
| 16:50 |
|
masak |
it all has to do with the unified way Bioclipse treats js and managers. |
| 16:50 |
|
edrin |
the jsconsole must run the rhino context alway in another way, anyway |
| 16:51 |
|
masak |
edrin: I just don't like code duplication, and I see no need to have it here. |
| 16:51 |
|
jonalv |
edrin: you may not be increasing deps but you are doing the same thing in many places in slightly different ways. That is in my oppinion worse. |
| 16:51 |
|
masak |
edrin: why in another way? |
| 16:52 |
|
edrin |
jonalv, masak: but that's what I say, js must be run from the jsc differently, comparing to jse. it is not a code duplication |
| 16:52 |
|
masak |
I think it is. |
| 16:52 |
|
edrin |
no |
| 16:52 |
|
masak |
I haven't seen anything to prove the contrary. |
| 16:52 |
|
edrin |
i can explain if you want |
| 16:53 |
|
jonalv |
edrin: just because it's a little bit different doesn't mean that it is not doing about 90% similar stuff |
| 16:53 |
|
edrin |
ok |
| 16:53 |
|
edrin |
no |
| 16:53 |
|
edrin |
ok on: jonalv: currently the editor would even run in solely |
| 16:53 |
|
jonalv |
edrin: no |
| 16:53 |
|
jonalv |
currently if you tried to run the editor solely you would end up with the same problem that I ahve |
| 16:54 |
|
jonalv |
and that is if you ahve my setupo. Yopu might bnot ahve a js.jar at all |
| 16:54 |
|
edrin |
jonalv: the thing that is 90% doing the same stuff is maybe 5 lines of code, but similar to creating a swt button i would not call this a code duplication |
| 16:55 |
|
jonalv |
the problem is that the js.jar does not seem to contain any versioning information as far as I can see. If that is so then the rhino people need to add one or we can just make one up but that won't help you run your plugin in Eclispe without Bioclispe... |
| 16:55 |
|
edrin |
creating the rhino context instance is really not much code, but in fact it is completely different using the context for the editor script, and for the jsconsole |
| 16:56 |
|
jonalv |
edrin: I think we are talking about getting all the managers and starting up all the managers plugins... That is not just 5 rows of code I think... but I might be wrong... |
| 16:56 |
|
masak |
edrin: how so? |
| 16:56 |
|
edrin |
jonalv: context: this means it is used really in two way... |
| 16:57 |
|
edrin |
the system of managers is quite well defined |
| 16:57 |
|
edrin |
i can even use them without depending on the interfaces ;) |
| 16:57 |
|
masak |
edrin: look. you're creating code duplication in the Bioclipse code base, and then you defend it without any substantial arguments. |
| 16:58 |
|
masak |
I think that's not acceptable. |
| 16:58 |
|
edrin |
what did I defined? there is a code duplication if to get the managers, that's true |
| 16:59 |
|
masak |
yes, and we've worked hard not do duplicate that bit. |
| 16:59 |
|
masak |
the whole rest of the Bioclipse GUI + console works with only one copy of that code. |
| 16:59 |
|
masak |
and now the js editor works with a second copy. |
| 17:00 |
|
masak |
what if we need to change the manager loading code slightly? |
| 17:00 |
|
edrin |
but it is used by the jsconsole only, isn't it? |
| 17:00 |
|
masak |
then the copies diverge, or we're lucky and remember to change it in both places. |
| 17:00 |
|
masak |
edrin: no, the js env is used by all of bioclipse. |
| 17:00 |
|
edrin |
masak: what is all of bioclipse? |
| 17:01 |
|
masak |
edrin: it's the entire program. |
| 17:01 |
|
masak |
all parts of it. not just the js console. |
| 17:01 |
|
edrin |
like pressing a button? |
| 17:02 |
|
masak |
sometimes. |
| 17:02 |
|
edrin |
but I agree, maybe to have exactly this code at two location is suboptimal |
| 17:02 |
|
masak |
I think so. |
| 17:02 |
|
masak |
I'll try and refactor it in a day or so. |
| 17:02 |
|
edrin |
hm, but on the other hand all this is eclipse standard extension points |
| 17:03 |
|
edrin |
isn't it? |
| 17:03 |
|
masak |
yes, but with spring and managers intertwined. |
| 17:03 |
|
edrin |
what? |
| 17:04 |
|
masak |
maybe we're talking across purposes. |
| 17:04 |
|
masak |
what did you refer to by 'all this'? |
| 17:05 |
|
edrin |
the way how the manager objects are defined in eclipse memory |
| 17:06 |
|
edrin |
look, the problem I fear here is that all the API defined by bioclipse moves far away from eclipse API... |
| 17:07 |
|
edrin |
like the bioclipse is creating or defining more and more API, and finally the eclipse part gets less then 10% or so... |
| 17:08 |
|
edrin |
like wraping everything through bioclipse inables the possibility to port stuff to eclipse |
| 17:09 |
|
edrin |
hm |
| 17:09 |
|
edrin |
maybe i did not formulate this correctly |
| 17:09 |
|
edrin |
in the right way |
| 17:09 |
|
edrin |
ok |
| 17:09 |
|
edrin |
jonalv: do you understand what I mean? |
| 17:10 |
|
jonalv |
edrin: yes |
| 17:11 |
|
masak |
edrin: I understand what you mean. |
| 17:11 |
|
edrin |
do you agree? |
| 17:11 |
|
jonalv |
edrin: you are the only one intrested in running Bioclipse without Bioclipse so to say I think |
| 17:11 |
|
zarah |
jonalv: oh, shut up :) |
| 17:11 |
|
edrin |
heh ;) |
| 17:11 |
|
edrin |
jonalv: I know what you mean |
| 17:11 |
|
masak |
哈哈哈 |
| 17:12 |
|
jonalv |
edrin: you are the only one intrested in running Bioclipse without Bioclipse so to say I think |
| 17:12 |
|
zarah |
jonalv: no, YOU are the only one! :) |
| 17:12 |
|
jonalv |
*lol* |
| 17:12 |
|
masak |
zarah: no, YOU shut up! |
| 17:12 |
|
zarah |
masak: :) |
| 17:12 |
|
edrin |
but in my believe biclipse should extend eclipse with API useful for bio/informaticians, and not replace or recreate eclipse |
| 17:13 |
|
jonalv |
edrin: then please get the rhino people to add a version number to their jar file |
| 17:13 |
|
jonalv |
edrin: that is what is the problem here |
| 17:14 |
|
edrin |
masak has a point here, too. getting the managers as I do it is not 100% optimal, but maybe we can find a way to get the with API standard calls, too? |
| 17:15 |
|
masak |
what API? |
| 17:15 |
|
masak |
rhino's? |
| 17:15 |
|
edrin |
jonalv: yes, they should add it |
| 17:15 |
|
edrin |
jonalv: can you live, and maybe convince ola, to live with 700kb extra space for now? |
| 17:16 |
|
edrin |
masak: no, the way of collecting managers from the API |
| 17:16 |
|
masak |
it's not about the extra space. |
| 17:16 |
|
masak |
it's about the duplicated code. |
| 17:16 |
|
masak |
edrin: what about the way of collecting managers from the API? |
| 17:16 |
|
* masak |
feels a bit like Eliza |
| 17:18 |
|
* jonalv |
thinks we should proibably just create a new plugin. call it org.mozilla.rhino or something and just package the rhino jar there... |
| 17:18 |
|
jonalv |
seems like the least evil... |
| 17:18 |
|
edrin |
it's a question about the future longlivety of code, if bc dies (it does not) all the plugins that depend on it die too |
| 17:18 |
|
edrin |
jonalv: thats a good idea |
| 17:19 |
|
edrin |
jonalv: that's exactly what I mean |
| 17:19 |
|
masak |
edrin: I'm not sure I need to like a reasoning step that assumes bc will not survive. |
| 17:20 |
|
edrin |
creating many small plugin, each with minimum dependencies, or at least limited complexity. this way it is much more clear what to do if there is a problem |
| 17:21 |
|
edrin |
if you have one mega plugin that does everything, and a nuke hits it, the centralized system dies... |
| 17:21 |
|
masak |
bc2 depends much on a unified scripting environment. |
| 17:21 |
|
edrin |
if you have many independent cells |
| 17:21 |
|
edrin |
each might constinue to live for itself |
| 17:22 |
|
edrin |
increased survival |
| 17:22 |
|
masak |
edrin: we're not developming individual plugins. we're developing a system of plugins. |
| 17:22 |
|
masak |
I believe in decoupling too, but... |
| 17:23 |
|
masak |
...there are times when making things work together is nicer. |
| 17:23 |
|
jonalv |
http://www.springsource.com/re[…]&version=1.7.0.R1 |
| 17:23 |
|
zarah |
jonalv's link is also http://tinyurl.com/d3s4vt |
| 17:23 |
|
edrin |
anyway, that's a more complex discussion and i must go, my clock said: fungal cells must be removed... |
| 17:23 |
|
jonalv |
could we just use that one? :) |
| 17:23 |
|
edrin |
ok |
| 17:23 |
|
edrin |
well, what version is it? |
| 17:24 |
|
edrin |
ah 1.7 |
| 17:24 |
|
edrin |
sorry |
| 17:24 |
|
edrin |
have to |
| 17:24 |
|
edrin |
go |
| 17:24 |
|
edrin |
really |
| 17:24 |
|
edrin |
my exp/cells |
| 17:24 |
|
jonalv |
edrin: oki |
| 17:26 |
|
jonalv |
@tell edrin I will use it... |
| 17:26 |
|
zarah |
Consider it noted. |
| 17:26 |
|
edrin |
ok |
| 17:26 |
|
zarah |
edrin: You have new messages. Write '/msg zarah @messages' to read them. |
| 17:26 |
|
edrin |
protocl |
| 17:49 |
|
CIA-55 |
bioclipse: jonalv * r8923 /bioclipse2/trunk/ (7 files in 7 dirs): switched to bundled version of rhino (1.7.0RC1) which resides in the target platform. |
| 17:54 |
|
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zarah joined #bioclipse |
| 17:55 |
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maclean joined #bioclipse |
| 17:55 |
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maclean |
shk3: about selections not showing |
| 17:56 |
|
shk3 |
yes |
| 17:56 |
|
maclean |
update |
| 17:56 |
|
maclean |
but yes, sorry I did break it |
| 17:57 |
|
shk3 |
no problem |
| 17:57 |
|
shk3 |
just wanted to make sure it's known |
| 17:57 |
|
maclean |
ok |
| 17:57 |
|
maclean |
by the way, in that update you might notice we changed how selections work |
| 17:57 |
|
maclean |
(slightly) |
| 17:57 |
|
jonalv |
oh for your information: After you update you need to set target platform due to my last commit |
| 17:58 |
|
maclean |
shk3 : for details on the change, see the whiteboard behind you :) |
| 17:58 |
|
maclean |
jonalv : oh hai prolific bug reporter! :) |
| 17:58 |
|
jonalv |
:) |
| 17:59 |
|
jonalv |
yup I was gonna move on to the js-editor but I couldn't get it to run untill after that commit :) |
| 17:59 |
|
maclean |
I now have 4 times the bugs I had yesterday... |
| 17:59 |
|
jonalv |
woho :) |
| 17:59 |
|
shk3 |
in jcp or bioclipse? |
| 17:59 |
|
maclean |
no just bioclpse |
| 18:00 |
|
maclean |
but developing in both simultaneosly is a pain |
| 18:00 |
|
jonalv |
tomorrow I will look at the js-editor :) |
| 18:00 |
|
jonalv |
now I think it's time to head home |
| 18:00 |
|
maclean |
bye |
| 18:00 |
|
jonalv |
it's about 11 hours since I arrived here... |
| 18:01 |
|
maclean |
!! |
| 18:01 |
|
jonalv |
it's been a craxy day... |
| 18:01 |
|
shk3 |
craxy? |
| 18:01 |
|
jonalv |
|crazy |
| 18:01 |
|
shk3 |
ah, crazy |
| 18:01 |
|
jonalv |
I had an exam that started 11 hours ago... |
| 18:02 |
|
maclean |
8am? |
| 18:02 |
|
jonalv |
and I sort of couldn't stop reporting bugs there for a while... :) |
| 18:02 |
|
jonalv |
yup |
| 18:02 |
|
maclean |
:( |
| 18:02 |
|
jonalv |
and then I really wanted to solve the rhino trouble a litle bit |
| 18:02 |
|
shk3 |
I am leaving as well |
| 18:03 |
|
jonalv |
btw: can someone confirm that rhino is workling after my commit? |
| 18:03 |
|
jonalv |
or nvm, it's not like I am gonna fix it now if it's not working... :) |
| 18:04 |
|
maclean |
I'll try |
| 19:42 |
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| 19:42 |
|
egonw |
moin |
| 19:42 |
|
zarah |
privet egonw |
| 19:50 |
|
|
edrin left #bioclipse |
| 20:13 |
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| 21:58 |
|
CIA-55 |
bioclipse: egonw * r8924 /bioclipse2/trunk/cdk-externals/trunk/org.openscience.cdk.io/ (3 files in 3 dirs): Updated to CDK 1.1.5.20090219, commit 14207: fixes reading of 2D and 3D coordinates from PubChem XML files |
| 22:50 |
|
CIA-55 |
bioclipse: egonw * r8925 /bioclipse2/trunk/plugins/ (2 files in 2 dirs): Support reading PubChem Compound XML files too now |
| 22:58 |
|
CIA-55 |
bioclipse: egonw * r8926 /bioclipse2/trunk/plugins/ (4 files in 2 dirs): Cleaned up code: removed unimportant IChemFile field (it was there only for the convention constructor, but the IChemFile is actually overwritten when being used, so no worries in setting it null) |
| 23:16 |
|
CIA-55 |
bioclipse: egonw * r8927 /bioclipse2/trunk/plugins/net.bioclipse.cdk.business/src/net/bioclipse/cdk/domain/CDKMoleculePropertySource.java: Show content-type in CDKMolecule props view |
| 23:17 |
|
CIA-55 |
bioclipse: egonw * r8928 /bioclipse2/trunk/plugins/net.bioclipse.cdk.business/src/net/bioclipse/cdk/domain/CDKMoleculePropertySource.java: Use the human readable name, not some cryptic internal representation |
