Camelia, the Perl 6 bug

IRC log for #bioclipse, 2009-03-08

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All times shown according to UTC.

Time Nick Message
09:43 olass joined #bioclipse
09:43 CIA-55 bioclipse: ospjuth * r9237 /bioclipse2/trunk/plugins/net.bioclips​e.cdk.business/src/net/bioclipse/cdk/d​omain/ChemObjectPropertySource.java: Added properties when CDKChemObject wraps an IAtomContainer.
10:02 edrin joined #bioclipse
10:04 CIA-55 bioclipse: ospjuth * r9238 /bioclipse2/trunk/plugins/net.bioclipse.cd​k.smartsmatching/src/net/bioclipse/cdk/sma​rtsmatching/views/SmartsMatchingView.java: Cache curent part and only update view if new part activated.
10:12 egonw joined #bioclipse
10:12 edrin hi egonw
10:12 egonw hi edrin
10:17 egonw I wish winter was over
10:17 edrin same here, it was snowing yesterday, although the snow is gone imediately
10:20 egonw we'll have 2-5cm this afternoon
11:15 edrin joined #bioclipse
12:16 edrin egonw, did you fix the cml's of your services?
12:16 edrin do they create a binding now?
12:16 egonw no :( sorry...
12:17 egonw was so close this week
12:17 egonw but then something came up again...
12:17 egonw ok, next on my list...
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13:07 CIA-55 bioclipse: edrin_t * r9239 /xws/trunk/xws4j/src/net/biocli​pse/xws/component/xmpp/process/ (3 files): now IProcessStatus returns the JID of the requester
13:22 edrin1 egonw: I now tried to compile the modified cml xsd manual with xmlbeans library:
13:22 edrin1 got this error:
13:22 edrin1 error: cvc-complex-type.3.2.2: Attribute not allowed: lang in element documentation@http://www.w3.org/2001/XMLSchema
13:22 zarah edrin1's link is also http://tinyurl.com/erkmb
13:26 egonw :(
13:26 edrin1 egonw: scomp did not complain...
13:29 * egonw is struggling with Eclipse 3.4.2 :(
13:29 egonw the update messed up my 3.4.x install
13:29 edrin1 oh
13:29 egonw and my fresh download for Java developers was a bad choice, and lacked RCP/PDE plugins :(
13:31 shk3 joined #bioclipse
13:31 edrin1 egonw: could you try this tool on CML ?
13:31 edrin1 http://schneegans.de/sv/
13:32 edrin1 hi shk3?
13:33 edrin1 egonw, shk3, i really have no clue about cml alot
13:33 edrin1 but the validation tool says there are errors
13:33 shk3 hi edrin1
13:35 shk3 which document?
13:35 edrin1 cml
13:35 edrin1 cml schema
13:35 egonw edrin1: the eclipse schema validation stuff is generally happy about it...
13:35 egonw but xml schema is a complex standard
13:35 edrin1 strange
13:35 edrin1 xml beans keeps complaining
13:36 egonw hi shk3
13:36 edrin1 not the scomp tool
13:36 edrin1 but the XmlBeans.compileXmlBeans()
13:36 edrin1 no clue why this is
13:36 shk3 and which errors are there?
13:38 edrin1 shk3: can you go to http://schneegans.de/sv/ and set the cml schema there in the online webpage?
13:38 shk3 mom
13:39 egonw well, that site only tells me that the XHTMl schema does not seem to be imported...
13:39 egonw for the copy CDK has
13:40 edrin1 oh
13:42 egonw but it's easily possible something is hidden in the long list of those messages...
13:42 edrin1 yes
13:42 edrin1 hm
13:42 shk3 hm, I get a valid: yes
13:42 edrin1 i am confused :)
13:42 shk3 but I don't have the latest schema probably
13:43 egonw maybe we hit a xmlbeans bug...
13:43 egonw that's still possible too...
13:43 shk3 I must admit I don't understand the cml svn repository
13:43 egonw will try, asap...
13:43 edrin1 yes, maybe
13:43 egonw but first need to get Bioclipse booting again :(
13:43 shk3 with all its versions etc.
13:44 edrin1 http://schneegans.de/sv/?url=http%3A%2F%2Fcml​.sourceforge.net%2Fschema%2FcmlCore.xsd&s​chema=XML+Schema&encoding=(Detect+automat​ically)&htmlcomp=(Detect+automatically)
13:44 zarah edrin1's link is also http://tinyurl.com/c4abev
13:44 edrin1 egonw: yes, sure
13:45 egonw OK, bc2 is booting, yeah! :)
13:46 edrin1 that was quick
14:55 CIA-55 bioclipse: egonw * r9240 /bioclipse2/trunk/cdk-externals/trunk​/org.openscience.cdk.sdg/src/org/open​science/cdk/layout/RingPlacer.java: Benzene in the correct orientation (fixes #639)
14:55 zarah bug #639 | http://tinyurl.com/c7xhkq
14:56 CIA-55 bioclipse: egonw * r9241 /bioclipse2/trunk/cdk-externals​/trunk/org.openscience.cdk.sdg/ (4 files in 2 dirs): Added two templates: benzene + sterane
16:03 CIA-55 bioclipse: shk3 * r9242 /bioclipse2/trunk/plugins/net.bioclipse.nmrs​hiftdb/src/net/bioclipse/nmrshiftdb/wizards/ (DisplayWizardPage.java SpectrumTypeWizardPage.java): the predict wizard offers using calculated spectra and informs about peaks for which no prediction was possible.
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