Camelia, the Perl 6 bug

IRC log for #bioclipse, 2009-03-11

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All times shown according to UTC.

Time Nick Message
01:18 ilogger2 joined #bioclipse
05:51 masak joined #bioclipse
06:01 egonw joined #bioclipse
06:18 egonw moin
06:18 zarah saluton egonw
06:20 masak egonw: mornin'
06:20 egonw hi masak
07:17 masak http://www.pcmag.com/artic​le2/0,2817,2342810,00.asp # :( :( :(
07:17 zarah masak's link is also http://tinyurl.com/cwydqu
07:17 masak I'm so backing up all my emails after it comes back online.
07:17 * egonw is an idiot
07:17 egonw if you are revering patches...
07:17 egonw start with the most recent one...
07:17 egonw my goodness...
07:18 egonw what was I thinking ?!?!?
07:18 egonw masak: yeah, gmail down again, right?
07:18 masak :(
07:18 egonw here too
07:19 egonw no wonder I get merge conflicts :)
07:19 egonw I was already wondering :)
07:19 masak heh
07:20 egonw fortunately... it's just local
07:20 egonw and I can erase my stupidity...
07:20 egonw oh grmph... the channel is logged :)
07:21 masak with logging, stupidity is forever.
07:32 Gpox joined #bioclipse
07:34 masak yay! Gmail is back!
08:13 rojasm joined #bioclipse
08:16 olass joined #bioclipse
08:41 egonw joined #bioclipse
09:20 shk3 joined #bioclipse
09:23 jonalv joined #bioclipse
09:31 masak egonw: happy namesday.
09:33 * olass will celebrate egonws namesday with another coffee
09:43 egonw masak: huh?
09:44 egonw I see edwin and elon
09:44 egonw not egbert
09:44 masak egonw: my calendar says Egon.
09:45 egonw yes, so does this website:
09:45 egonw http://skandland.com/nametbl-d-g.htm
09:45 zarah egonw's link is also http://tinyurl.com/cwqqsm
09:45 Gpox http://www.namnsdag.se/
09:45 egonw "Friend with his sword"
09:50 egonw I like that :)
10:07 shk3 Saint Egon
10:07 shk3 who was that?
10:45 masak shk3: Wikipedia doesn't seem to know.
10:46 shk3 fake one, it seems
10:46 masak yah. we need to watch out for those fake saints.
10:52 masak http://blog.jrock.us/articles/G​it%20merging%20by%20example.pod
10:52 zarah masak's link is also http://tinyurl.com/6p23qz
10:53 masak that's the only blog post about git merging I have found so far. I'm seriously thinking about investigating the different merge strategies on my own and blog about it.
10:53 masak s/blog/blogging/
11:07 CIA-55 bioclipse: carl_masak * r9277 /bioclipse2/trunk/plugins/net.bioclipse​.scripting.ui/src/net/bioclipse/scripti​ng/ui/views/ScriptingConsoleView.java: [ScriptingConsolveView] added Ctrl+Space for tab completion
12:00 shk3 merging of atoms works
12:00 shk3 just need to add the rendering
12:00 shk3 and undo/redo
12:00 shk3 but making progress
12:32 edrin joined #bioclipse
12:39 jonalv joined #bioclipse
12:40 jonalv @pz cdk.addExplicitHydrogens
12:40 zarah [691] cdk.addExplicitHydrogens borken    http://tinyurl.com/cd6q6j
12:40 zarah Entire list at http://tinyurl.com/az6ggg
12:43 egonw jonalv: is there a unit test?
12:43 jonalv egonw: I don\t know
12:43 jonalv egonw: probably not...
13:30 egonw http://timetric.com/series/d7T2uPshQg6IqOR-ueB3ng/
13:30 zarah egonw's link is also http://tinyurl.com/csj3kx
13:30 egonw yeah, our savings in NL are getting more SEKs every day :)
13:31 egonw and very fast now :)
13:31 egonw however, at the same time... they amount of euros I earn every days is serisouly decreasing at the same time :(
13:31 shk3 I know that situation
13:32 egonw yeah, pound nothing different I guess...
13:32 egonw http://timetric.com/series/d7T2uPshQg6IqOR-ueB3ng/
13:32 zarah egonw's link is also http://tinyurl.com/csj3kx
13:33 egonw actually, seems pretty stable now
13:33 shk3 yes, we are at a plateau right now
13:49 olass egonw: you promised to look at bug #685 a few days ago
13:49 egonw @pz 685
13:49 zarah http://pele.farmbio.uu.se/cgi-b​in/bugzilla/show_bug.cgi?id=685
13:49 olass I even wrote you a unit test for it
13:49 olass :)
13:49 egonw that helps
13:49 egonw so did this ping
13:50 olass good
13:50 * egonw is doing missing atom types in the CDK
13:51 egonw iodine is an interesting element
13:51 egonw can do lots of chemistry
13:51 egonw e.g. it can bond 1, 2, 3 or 4 neighbors
13:51 egonw which different valencies
13:51 egonw quite nice
14:01 egonw grmp...
14:01 egonw my CDKManagerPluginTest is not running
14:01 egonw already reset target platform...
14:01 olass add required deps in run config
14:02 olass (things might have changed in deps, run cofig is not synced for this)
14:02 egonw as in bioclipse.product?
14:02 egonw I can run Bioclipse
14:02 egonw that works
14:02 egonw but not the PluginTest
14:02 olass that is another thing
14:02 olass we have no product for the tests
14:02 olass product creates a new run config
14:02 egonw indeed
14:03 egonw how do I update the run config then?
14:03 olass hence for tests you need manually "add required plugins" in run config
14:03 olass or "deselect all", click cdk.business.tests", then "add required plugins"
14:04 egonw ok, deleted the config
14:04 egonw that might do the job too
14:04 egonw no, it does not
14:06 egonw ok, olass... your suggestion helps...
14:06 egonw never did that before...
14:06 olass :)
14:06 egonw so wondering why it always worked for me :)
14:06 egonw ok, one fail... the SMARTS one
14:06 egonw good
14:17 CIA-55 bioclipse: egonw * r9278 /bioclipse2/trunk/plugins/net.bioclipse.cdk.busine​ss/src/net/bioclipse/cdk/business/CDKManager.java: Catch TokenMgrErrors throws by the SMARTS parser too, and mark the SMARTS as invalid then (fixes #685)
14:17 zarah bug #685 | http://tinyurl.com/bzoym6
15:59 shk3 my eclipse got mad
15:59 shk3 can't commit :-(
16:12 shk3 fuck, svn is messed up
16:12 shk3 my local copy
16:14 masak software sucks.
16:15 masak @ask egonw did you tell jonalv that he should rebase his upstream? I can't imagine you did, but he seems very insistent.
16:15 zarah Consider it noted.
16:26 edrin http://xkcd.com/554/
16:26 zarah edrin: You have new messages. Write '/msg zarah @messages' to read them.
16:26 edrin @msg
16:26 zarah edrin: 2 d 5 h 25 m 43 s ago, jonalv said Please don't use tabs in the Bioclipse repo. Things get very complicated for poor me when you do... :(
17:49 olass edrin: http://wiki.bioclipse.net/i​ndex.php?title=Style_guide
17:50 zarah olass's link is also http://tinyurl.com/5wlqjo
17:50 olass install tabless.xml in eclipse
18:18 edrin left #bioclipse
18:37 egonw joined #bioclipse
18:39 egonw joined #bioclipse
18:46 shk3 hi egonw
20:28 charlgren joined #bioclipse
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