Camelia, the Perl 6 bug

IRC log for #bioclipse, 2009-03-15

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All times shown according to UTC.

Time Nick Message
10:47 egonw joined #bioclipse
12:21 olass joined #bioclipse
12:21 olass moin
12:21 zarah privet olass
12:26 olass hi egonw
12:26 egonw hi
12:26 zarah privet egonw
12:28 egonw lunch is ready
12:28 egonw bbl
12:29 egonw olass: please check your bug list... I need your help with the open editor for new resource without file backend thingy... was not able to get your code working
12:30 olass egonw: please check ActionHistoryView
12:30 olass I just copied stuff from there
12:31 olass hmm
12:31 olass is it this line?
12:31 olass IWorkbenchPage page= getViewSite().getPage();
12:32 olass that could be resolved with PlatformUI.get...
12:32 olass PlatformUI.getWorkbench().getActiv​eWorkbenchWindow().getActivePage()
12:49 egonw olass: that's the code I used...
12:49 egonw from ActionHistoryView
12:49 egonw but that did not work...
12:49 egonw I need to get sleep now...
12:49 olass :(
12:49 olass sleep?
12:49 egonw yes, sleep
12:49 olass did you stay up late yesterday?
12:49 egonw nope
12:50 egonw been two really busy, exhausting weeks...
12:50 olass right
12:50 olass weekends are for resting
12:50 olass talk to you online tomorrow
12:50 olass did we have xmpp meeting in the morning?
12:50 egonw ack
12:50 egonw yes, I think so...
12:50 egonw now that you mention it
12:50 olass 8.30?
12:51 egonw yes, sounds good
12:51 olass I'll email out and confirm with edrin
12:51 olass talk to you tomorrow
12:51 egonw ok
12:51 egonw bbl
12:51 egonw bye
12:51 egonw oh, please email about planes too
12:51 olass yes, not 100% sure yet
12:51 olass but will email
12:51 olass ttl
12:52 olass ok, answering now
15:23 egonw joined #bioclipse
15:29 egonw hi olass
15:29 olass hi
15:29 zarah privet olass
15:29 olass egonw: did you sleep well?
15:29 egonw as a rock
15:29 egonw not feeling too much better though...
15:29 egonw apparently, I really, really needed it...
15:35 olass egonw: you need to take care of yourself
15:36 olass listen to your body
15:46 egonw yes, I'd love too...
15:47 egonw but listening to your body is so much nicer with an income, after you took care of your family, and after having a house
15:47 egonw but indeed...
15:47 egonw I need a really good holiday this year
15:47 egonw and I so regret signing up for that course :(
15:47 egonw (in terms of timing)
15:47 olass what course?
15:48 olass swedish?
15:48 egonw no, the one that Maris coordinates
15:48 egonw pharma bioinfo
15:48 olass ha ha ha
15:48 olass you will go that ourse?
15:48 olass seriously...
15:48 egonw well... it's already happening for 6 weeks or so...
15:49 olass it is on soooo low level...
15:49 egonw yeah, maybe too...
15:49 olass I strongly advice you to skip it
15:49 egonw but would be a good tour around of the skills I have but then in pharma research
15:49 egonw or so the thought was
15:49 olass well, IMO you will learn extremely little
15:49 egonw well, I signed up... and doing to course
15:49 egonw yes, probably...
15:50 olass trust me
15:50 egonw the good thing about that is that the exercises are easy
15:50 egonw but I haven't even had the time to make them
15:50 egonw the first week was some basic exp design
15:50 egonw I'll give the PlatformUI line a go...
15:51 olass great
15:54 egonw examination is next week, actually
15:55 olass I don't think excercises are mandatory
15:55 olass just FYI
15:55 olass but not 100% sure
15:55 egonw yeah, it's a cheap way to learn the material
15:55 egonw I'm too late with sending them in anyway :)
15:55 olass :)
15:55 egonw another reason to take the course was, btw, to see how well Bioclipse would do the job
15:55 egonw could I do the complete course form within Bioclipse
15:56 egonw that was actually my plan...
15:56 olass yes
15:56 egonw and hack up bits here and there where needed...
15:56 olass that is what we are aiming for in teh longer run...
15:56 olass a great initiiative
15:56 egonw yes, but then comes the grant writing, and paper writing, and, and ...
15:56 olass I know
15:57 olass these are hectic times
15:57 olass any progres with VR-NT and the XMPP?
15:57 egonw minimal
15:57 olass ack
15:57 egonw on my list for tonite and tomorrow
15:57 egonw XMPP... progress with testing the CML schema...
15:57 egonw will need to try to create binding from within BC2 today
15:57 egonw ok, slowly getting awake it seems...
15:57 olass was just thinking for tomorrows meeting
15:58 egonw yes, will do some work on the paper tonite
15:58 olass excellent
15:58 olass I will present Bioclipse for SGC at KI in Sthlm tomorrow
15:58 olass working on a pres
15:59 olass http://sgc.ki.se/
15:59 egonw ah good!
15:59 olass trying to spread the word :)
15:59 egonw very good
15:59 egonw mmm... should have known....
15:59 olass but takes time.. and time is valuable
15:59 egonw then I could have provided a slide for metabolomics
15:59 olass no worries
15:59 olass will be more opportunities
16:00 olass and this is just a very short meeting
16:00 olass when you have a bioclipse screenshot for metabolomics I'd like that :)
16:00 egonw oh, btw...
16:00 egonw what's the story with the MatrixEditor
16:00 egonw ?
16:00 egonw the one I found is a replacement
16:00 olass did not understand your bug at all
16:01 egonw but largly unfinished
16:01 olass see QSAR feature
16:01 olass I have not explored it in detail
16:01 olass but it does work
16:01 olass and does the job
16:01 olass net.bioclipse.statistics
16:01 olass net.bioclipse.statistics.jama
16:01 egonw ok... that's a different MatrixEditor !
16:02 egonw ic
16:02 olass ok, that explains things
16:02 egonw there is also one in net.bioclipse.analysis
16:02 olass hmm, should probably be removed
16:02 egonw OK, will update the bug report...
16:02 egonw right, think so too
16:02 olass filefor me
16:02 olass and I'll look into it when I have time
16:03 egonw ok, done
16:05 egonw actually... OK if I just remove it
16:06 egonw it hasn't been worked on since Mar 4 2008
16:08 egonw only TABs and sorts
16:09 egonw anyway...
16:09 egonw I will add a CSV content type to nb.statistics
16:16 egonw @pz 718
16:16 zarah http://pele.farmbio.uu.se/cgi-b​in/bugzilla/show_bug.cgi?id=718
16:59 egonw olass: git merge csv4RDF :)
16:59 olass ?
16:59 egonw that's applying the CSV content type patch
16:59 CIA-33 bioclipse: egonw * r9311 /bioclipse2/trunk/features/net.bi​oclipse.rdf_feature/feature.xml: Depend on the correct plugin for a working MatrixEditor
16:59 egonw already cued up
16:59 olass whateve
16:59 egonw :)
16:59 CIA-33 bioclipse: egonw * r9312 /bioclipse2/trunk/plugins/net.b​ioclipse.statistics/plugin.xml: Added CSV content type
17:11 egonw dinner

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