Camelia, the Perl 6 bug

IRC log for #bioclipse, 2009-04-21

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All times shown according to UTC.

Time Nick Message
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08:31 CIA-73 bioclipse: shk3 * r9906 /bioclipse2/trunk/plugins/net.bioclipse.nmrs​hiftdb/src/net/bioclipse/nmrshiftdb/wizards/ (SubmitJob.java SubmitWizard.java): introduced a job for submit
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08:42 egonw_ stain_: can you update me on people working on Eclipse RCP/Taverna work? Is there any? If so, who is doing that?
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08:47 CIA-73 bioclipse: shk3 * r9907 /bioclipse2/trunk/plugins/net.biocl​ipse.nmrshiftdb/src/net/bioclipse/n​mrshiftdb/wizards/SubmitJob.java: introduced a job for submit
09:05 CIA-73 bioclipse: shk3 * r9908 /bioclipse2/trunk/plugins/net.biocl​ipse.nmrshiftdb/src/net/bioclipse/n​mrshiftdb/wizards/SubmitJob.java: introduced a job for submit
09:12 stain_ egonw_: there's none, if not you..
09:12 egonw_ OK
09:12 egonw_ there was some rumour here at the CDK workshop
09:13 egonw_ from an industrial who indicated that someone was wokring on that
09:13 stain_ but we are looking into moving to using an OGSi framework
09:13 egonw_ in reply to a CDK-KNIME we had yesterday
09:13 * jonalv can higly recommend OSGi :)
09:14 stain_ we're hoping to not be let down too much :)
09:14 stain_ but then we have to choose OSGi framework as well!
09:14 stain_ Alan tried with Felix application inside Equinox, which seemed to work
09:16 stain_ s/with/with a/
09:16 egonw_ URL?
09:16 stain_ but it would still be a 6-8 month project..
09:16 stain_ I think it's just on his computer
09:18 egonw_ ic
09:18 stain_ it would mean a change to all the different things we discover in the workbench, like perspectives, service providers, service configurations, menu items, etc..
09:19 jonalv stain_: I guess you have considered walking down the Eclipse RCP path?
09:19 stain_ yes - but doing a move to the full RCP would mean another 6 months
09:20 stain_ and it wouldn't really give us anything immediately as we have already implemented those boring things like File->Open, Edit->Undo, etc. our self..
09:20 stain_ the question is if it's possible to do a slow migration to RCP
09:20 jonalv you would get a nice OSGi framework...
09:21 egonw_ stain_: I can imagine focusing on SWT/RCP components first...
09:21 egonw_ it would be great to use those in e.g. Bioclipse
09:21 egonw_ or Cytoscape-RCP
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10:49 CIA-73 bioclipse: ospjuth * r9909 /bioclipse2/trunk/cdk-externals/trunk/ (2 files in 2 dirs): Updated ID date part for changed cdk plugins to 20090417.
10:50 * olass finally got internet again
10:50 olass the wireless just timed out even though mine should be valid for 9 days
10:50 olass annoying
10:50 olass I stole it from another workshop that lasted for 9 days :)
10:53 masak :)
10:58 egonw_ yeah, my hotel ID timed out too
11:00 egonw_ jonalv, olass: bioclipse structuredb use case
11:00 olass egonw_: what you mean?
11:00 egonw_ would be great to do that...
11:00 egonw_ a 3D plot like that
11:00 olass yes
11:00 egonw_ maybe using Jmol
11:01 olass jmol or jcp depeneding if 2d or 3d
11:01 olass oh
11:01 egonw_ we already have ISelection event when selecting an tom
11:01 jonalv egonw_: sry, I was thinking about Bioclipse job and partly results...
11:01 egonw_ and show the 2D in a separate view
11:01 olass egonw_: there are java packages that could be integrated for 3D views
11:01 olass 3d graphs
11:02 olass I think Martin actualy has used one from java
11:02 olass we were thinking of adding it
11:02 olass will ask him
11:02 olass jfreechart was also working on a 3D grapher...
11:03 olass hmm, doesn't seem to be available yet
11:04 olass http://jmathtools.berlios.de/doku.php?i​d=jmathplot:tutorial#two_3d_grid_plots
11:04 zarah olass's link is also http://tinyurl.com/c5bdf5
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16:03 olass rojasm: http://wiki.bioclipse.net/index.p​hp?title=Checking_out_Bioclipse_2
16:03 olass that should be complete
16:03 zarah olass's link is also http://tinyurl.com/58kmzp
16:03 rojasm thanx
16:03 olass if not, let me, egon, and/or jonalv know
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22:19 olass egonw: still awake?
22:26 egonw yes
22:26 egonw I always need time to relax after a full day like this
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22:33 olass egonw: define relax :)
22:34 egonw ummm... actually clean up the git mess I accidentally created in the CDK project :(
22:34 egonw I accidentally (apparently) merged master with the cdk-1.2.x branch :(
22:34 egonw f**k f**k f**k
22:34 egonw don't worry about understanding this :)
22:39 egonw but, it's git... so I can clean it
22:39 egonw just figuring out, how exactly
22:39 egonw about done, though
22:40 olass will go to bed now
22:40 olass tomorrow our taxi leaves at 09.15
22:40 olass see you for breakfast
22:40 egonw ack
22:40 egonw 8:30 breakfast
22:41 olass good night
22:41 egonw bye

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