Camelia, the Perl 6 bug

IRC log for #bioclipse, 2009-04-27

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All times shown according to UTC.

Time Nick Message
04:48 masak joined #bioclipse
05:36 egonw joined #bioclipse
06:20 olass joined #bioclipse
06:20 olass moin
06:20 zarah saluton olass
06:20 masak oh hai
06:20 zarah saluton masak
06:21 masak saluton zarah
06:21 olass privet masak
06:21 masak ni hao olass
06:21 olass zarah: dober dan
06:21 zarah olass: are you talking to *me*?
06:21 olass @botsnack
06:21 egonw moin
06:21 zarah ;)
06:21 zarah hello egonw, you fantastic person you
06:21 olass zarah: keep calm
06:21 zarah olass: you've just exceeded my capabilities :/
06:22 olass zarah: I know
06:22 zarah olass: eh... wha'?
06:25 sneumann joined #bioclipse
06:37 edrin joined #bioclipse
06:37 olass hi edrin
06:39 edrin hi
06:39 zarah oh hai edrin
06:53 rojasm joined #bioclipse
07:01 Gpox joined #bioclipse
08:01 jonalv joined #bioclipse
08:08 shk3 joined #bioclipse
08:27 maclean joined #bioclipse
09:13 CIA-73 bioclipse: carl_masak * r9927 /bioclipse2/trunk/plugins/net.bioclip​se.scripting.ui/src/net/bioclipse/scr​ipting/ui/views/JsConsoleView.java:
09:13 CIA-73 bioclipse: [JsConsoleView] cosmetic cleanup
09:13 CIA-73 bioclipse: Touched up various parts of tabCompletionHook as part of a read-write review.
09:13 CIA-73 bioclipse: carl_masak * r9928 /bioclipse2/trunk/plugins/net.bioclip​se.scripting.ui/src/net/bioclipse/scr​ipting/ui/views/JsConsoleView.java:
09:13 CIA-73 bioclipse: [JsConsoleView] search deeply for interfaces
09:13 CIA-73 bioclipse: tabCompletionHook didn't look deeply enough in the inheritance tree for
09:13 CIA-73 bioclipse: @PublishedClass interfaces. now it does. fixes half of #871.
09:26 maclean joined #bioclipse
09:31 edrin joined #bioclipse
10:16 egonw joined #bioclipse
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11:10 egonw joined #bioclipse
11:41 maclean joined #bioclipse
11:42 egonw joined #bioclipse
12:08 jonalv cdk10 is not compiling for me. egonw shouldn't it?
12:09 egonw there is a bug report about that... I will look at that
12:09 olass cdk10 is long long since deprecated
12:09 jonalv olass: plese remove it then...
12:09 olass jonalv: please remove it from your build path
12:09 jonalv olass: please remove it from trunk in that case
12:09 egonw me has a deja vu
12:09 egonw I feel I had this discussion already before...
12:09 olass egonw: please fix it or remove it from trunk :)
12:10 egonw olass: it's on my list...
12:10 * jonalv feels that we can't have solved it then...
12:10 olass can't?
12:10 olass why not?
12:10 olass we can do anything
12:11 olass jonalv: define 'it'
12:11 jonalv we can't have solved it last time since the problem is there for me...
12:11 olass jonalv: oh, you mean we haven't solved it yet
12:11 jonalv define it as "what that last discussion was about"
12:11 olass jonalv: there is a bug
12:11 olass vote for it
12:11 jonalv ah there is a bug?
12:12 olass and spam egonw
12:12 jonalv awesome
12:12 egonw jonalv: I just said that twice
12:12 olass well... egonw said it is...
12:12 jonalv I thought I was spamming egonw right now :)
12:12 egonw yes, you are
12:12 jonalv :)
12:13 maclean jonalv : why not just remove it from your workspace? Then there won't be those annoying red marks...
12:13 jonalv anyone happend to know what net.bioclipse.compute does?
12:13 maclean yes, I do, oddly enough.
12:14 maclean It is used in the seneca plugin at the moment, but it should go away soon
12:14 jonalv maclean: I want to have anything in my worksapce. I am doing _MAJOR_ refactoring and don't want to miss any plugins
12:14 maclean sorry, I mean that the seneca plugin's requirement will go away
12:14 jonalv I have moved the interface IBioclipseManager
12:15 jonalv and created a net.bioclipse.managers plugin that all plugins will depend on
12:15 maclean you want to have /everything/ in your workspace. Having 'anything' seems a little vaguer :)
12:15 * jonalv got stuck inte deep dependency struggle
12:15 masak joined #bioclipse
12:16 jonalv maclean: *lol* understand what I want not what I write! :)
12:16 masak jonalv: you must be new here.
12:16 maclean that's alright, I understood what you meant.
12:16 jonalv masak++
12:17 jonalv nooo this won't work either
12:17 jonalv I will have to move all managers out of core
12:17 maclean anyway, the compute plugin should be regarded as obsolete, or nearly so, I think.
12:17 jonalv we can't ahve managers in core
12:17 maclean we can't?
12:18 jonalv net.bioclipse.core must be clean from managers as far as I can see
12:18 egonw jonalv: net.bioclipse.compute was what you are trying to do now...
12:18 egonw jonalv: agreed... if we say manager stuff is optional...
12:18 jonalv egonw: not really no. I just stumbled upon it an wondered about what it was
12:19 maclean well wonder no more!
12:19 jonalv egonw: uhm well that too. But more importantly because of circular deps
12:21 CIA-73 bioclipse: egonw * r9929 /bioclipse2/trunk/outdated/net.bio​clipse.cdk10/META-INF/MANIFEST.MF: Fixed manifest to have the right XOM lib version (fixes #897)
12:21 zarah bug #897 | http://tinyurl.com/c3w35k
12:24 egonw jonalv: you can open the cdk10 plugins noe
12:24 egonw jonalv: you can open the cdk10 plugins now
12:28 jonalv git++
12:29 olass jonalv: how is the last world order coming along?
12:29 jonalv olass: slowly, I need to refactor and rewrite basically everything
12:29 jonalv + I have a headache
12:29 masak "last world order". brr.
12:29 jonalv :(
12:29 * maclean thinks 'last' is much more sinister than 'new' in that context
12:29 olass jonalv: beer?
12:30 jonalv olass: no
12:30 olass jonalv: masak?
12:30 * jonalv id fearing a cold...
12:30 olass ;)
12:30 masak :)
12:30 olass oh no
12:30 * masak has been known to produce headaches
12:30 maclean with perl code?
12:31 olass lol
12:31 masak I'm also slightly carcinogenic.
12:31 olass oops
12:31 masak maclean: I'll take what I can get my hands on. Perl, INTERCAL, brainf**k...
12:31 maclean heh.
12:31 masak maclean: you should see my object-oriented brainf**k.
12:31 maclean nooooo!
12:31 masak mwhahaha.
12:32 maclean btw, I like the syntax in expressions like : "if [<] @values..."
12:32 masak maclean: me too.
12:32 egonw what kind of smiley is that?!?!
12:33 masak egonw: a Perl 6 one.
12:33 maclean perl pulls some very strange facial expressions
12:33 masak yeah, like }{
12:34 masak oh, it was =()=
12:34 * maclean hopes that is not an operator
12:34 masak maclean: not as such.
12:35 masak maclean: but it is sometimes referred to as 'the goatse operator'.
12:35 maclean damn. that's exactly what I thought.
12:35 jonalv yuw
12:35 maclean I spend too much time on b3ta
12:35 masak :D
12:35 masak maclean: apparently.
12:36 maclean }{ is the 'secret eskimo greeting' operator, apparently.
12:36 masak right.
12:37 egonw maclean: left?
12:37 masak useful in -p scripts, IIRC.
12:37 maclean egonw: right?
12:37 masak egonw: center?
12:38 egonw masak: oh, you want in between the two inuit?
12:39 egonw masak: well, from what I understood, they are happy with any way you like
12:39 masak egonw: oh, yes!
12:39 * masak wants to be stuck in the middle with Inuit
12:40 masak "hey, whay's that guy always running in between us for? it's damn annoying, is what it is..."
13:11 jonalv olass, egonw: can I remove that MoleculeManager?
13:12 olass I'm fine with you removing it
13:12 olass I donät use it
13:12 olass don't
13:12 jonalv can you think of anyone who might be using it?
13:12 shk3 may I inquire about the status of the compute plugin?
13:12 shk3 it is supposed to be used?
13:13 shk3 e.g. qsar doesn't (doesnät)
13:13 * jonalv doesn't even know what it does
13:13 shk3 althought that would be use case
13:13 egonw jonalv: no clue what the MoleculeManager is
13:13 egonw shk3: I think Jonathan's work replaces .compute
13:13 jonalv egonw: I will be right over to you then to show you...
13:14 egonw ok
13:16 maclean I think that the compute plugin does overlap with jonalv's work
13:17 maclean but also has the intention of communicating with external processes (local, or remote [grid|cluster|cloud|...])
13:17 egonw maclean: the primary goal was to be able to start of time consuming jobs
13:17 egonw that's all
13:18 maclean oh, right ok
13:18 egonw maclean: my summer student did it
13:18 maclean ah
13:18 egonw and there was nothing better at the time
13:18 maclean :)
13:42 jonalv egonw: could you look at it
13:47 egonw what?
13:47 jonalv egonw: the pele branch
13:47 jonalv egonw: it seems wrong to me
13:47 jonalv egonw: how many branches can you eee on it?
13:47 egonw 2
13:47 egonw master
13:47 egonw and GistManagerRefactoring
13:47 jonalv oki
13:47 jonalv ignore master
13:47 jonalv it's wrong
13:48 egonw ok
13:48 jonalv maybe remove it? I just don't know how to do that...
13:48 egonw no, leave it
14:02 masak jonalv: git push pele :master
14:04 maclean ":master"?
14:04 maclean or "master"
14:04 maclean sorry, just curious
14:05 egonw the : indicated delete
14:05 maclean ohh.
14:05 egonw no clue who came with that brilliant idea
14:05 maclean heh
14:19 CIA-73 bioclipse: shk3 * r9930 /bioclipse2/trunk/plugins/net​.bioclipse.data.seneca/data/ (4 files in 4 dirs): correct classnames in sample data
14:29 egonw jonalv: ping
14:29 egonw I get very many conflicts
14:29 egonw did you rebase your patches on a recent master?
14:31 jonalv egonw: uhm define recent :)
14:31 egonw ok :)
14:31 jonalv egonw: you want me t odo it now?
14:31 egonw I cannot apply your patches
14:32 egonw and cannot look at it right now
14:32 jonalv egonw: you don't have the time right now?
14:32 egonw I do
14:32 jonalv egonw: but?
14:32 egonw but there are merge conflicts
14:32 egonw and your patches does not work here
14:33 jonalv egonw: so do you want me to do a new rebase?
14:33 egonw well, anything that makes the patches work here...
14:34 jonalv okey I am gonan try another rebase then...
14:41 edrin where is ola?
14:42 egonw broken connection
14:43 edrin ok
14:43 edrin zarah: tell ola: I please need the screenshot
14:43 zarah Consider it noted.
14:43 egonw masak: ping
14:43 egonw can you help with your insight and critical comments?
14:44 egonw if not just about linguistic stuff
14:44 egonw about git matters
14:45 CIA-73 bioclipse: shk3 * r9931 /bioclipse2/trunk/plugins/net.biocli​pse.seneca/src/net/bioclipse/seneca/ (2 files in 2 dirs): avods npe in save
14:47 egonw masak: ping
15:09 egonw shk3: please fix the .project of the seneca data plugin to not say drugbank, as it apparently does
15:10 shk3 oops
15:11 shk3 here you are:
15:12 CIA-73 bioclipse: shk3 * r9932 /bioclipse2/trunk/plugins/net.b​ioclipse.data.seneca/.project: changed .project for correct project name
15:12 egonw thanx
15:18 masak http://www.qwantz.com/archive/001049.html
15:18 zarah masak's link is also http://tinyurl.com/c8bvve
15:19 edrin will ola come back?
15:21 rajarshi joined #bioclipse
15:21 masak edrin: hard to say. he's not in Uppsala, so we can't see him. he didn't leave a message.
15:21 edrin ok
15:21 edrin thanks :)
15:21 masak np.
15:27 olass joined #bioclipse
15:27 olass hi again
15:27 olass no idea what happened
15:27 olass was disconnected :(
15:27 olass @msg
15:27 zarah olass: You have no new messages.
15:28 olass @dz
15:28 zarah you're welcome, olass :)
15:29 masak olass: edrin asked for you.
15:29 edrin i already sent a mail
15:29 edrin :)
15:41 egonw no, don't have notes with me either
15:42 jonalv git++
15:44 masak karma git
15:44 zarah git has a karma of 17
15:44 masak :)
15:44 jonalv karma svn
15:44 zarah svn has a karma of 2
15:44 jonalv karma SVN
15:44 zarah SVN has a karma of -2
15:44 masak SVN--
15:45 jonalv karma Git
15:45 zarah Git has a karma of 0
15:45 masak karma gIT
15:45 zarah gIT has a karma of 0
15:45 * egonw is heading home
15:51 stain_ karma karma
15:51 zarah karma has a karma of 4
15:58 jonalv karma++
15:58 zarah jonalv has a karma of 89
15:59 jonalv zarah: no...
15:59 zarah jonalv: I see.
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18:10 edrin joined #bioclipse
18:12 edrin hi again
18:48 egonw hi edrin
18:48 zarah egonw: You have new messages. Write '/msg zarah @messages' to read them.
18:48 egonw @msg
18:48 zarah egonw: 1 h 14 m 55 s ago, maclean said : could the IIteratingChemObjectReader interface extend Iterable<ChemObject> ?
18:48 zarah egonw: 1 h 10 m 25 s ago, maclean said never mind, I found out why not
18:48 egonw :)
19:15 edrin joined #bioclipse

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