Camelia, the Perl 6 bug

IRC log for #bioclipse, 2009-05-03

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All times shown according to UTC.

Time Nick Message
04:33 egonw joined #bioclipse
06:24 egonw joined #bioclipse
07:45 olass joined #bioclipse
07:46 olass hi egonw
07:46 * olass is updating bioclipse-cdk
07:56 CIA-40 bioclipse: ospjuth * r10038 /bioclipse2/trunk/plugins/net.biocli​pse.cdk.ui.sdfeditor/src/net/bioclip​se/cdk/ui/wizards/NewSdfWizard.java: Removed unused imports to make ui.sdfeditor compile.
07:57 CIA-40 bioclipse: ospjuth * r10039 /bioclipse2/trunk/plugins/net.bioclipse.ui/src/ne​t/bioclipse/ui/ApplicationWorkbenchAdvisor.java: Added verbose logging and commenting in the Auto Updates to allow for tracking errors.
08:13 edrin joined #bioclipse
08:14 edrin hi
08:14 zarah ni hao edrin
08:19 edrin hi egonw
08:20 edrin this is really a strange bug
08:20 edrin i think the QSAR service is using CML in 4 functions, too
08:20 edrin and there it works
08:37 olass hi edrin
08:37 edrin hi olass
08:37 edrin didn't see you :)
08:38 edrin olass: i was modifyig the wiki a little bit
08:39 olass sounds good
08:46 edrin olass: could you make teh wiki a non public (anyIP) editable wiki? otherwise some spamers might kill it
08:47 olass yes
08:47 olass sounds like a good idea
08:47 olass hum
08:47 olass don't remember how
08:47 olass you know?
08:47 edrin no
08:47 olass else I look it up
08:47 olass ok
08:47 edrin probably in the config
08:47 olass no prob
08:47 edrin we still need an icon for it ;)
08:48 olass edrin: and maybe a new skin would be nice too
08:48 edrin yes
08:48 edrin hm, a big uni IT department should provide a graphic service to their users
08:48 edrin :)
09:04 * egonw will be busy today with Lars' birthday party for friends from school
09:04 edrin ah
09:04 edrin hehe
09:04 egonw edrin: if you have more stacktraces, please email
09:05 edrin what will you do?
09:05 egonw I don't get any stacktraces
09:05 egonw pirate party
09:05 edrin ok
09:05 edrin good
09:05 egonw not to be mistaken with the political group with the same name
09:05 edrin yeah :)
09:05 edrin i heared of it
09:05 egonw you can vote for them in the next EP elections
09:06 edrin they are for the pirate bay..
09:14 CIA-40 bioclipse: ospjuth * r10040 /bioclipse2/trunk/plugins/net​.bioclipse.balloon.business/ (3 files in 3 dirs): Fixed ballon to operate on CML. Solves bug #971.
09:14 zarah bug #971 | http://tinyurl.com/cuagf8
09:16 edrin olass: what ejabberd version is running on ws1 ?
09:16 olass mom
09:17 CIA-40 bioclipse: ospjuth * r10041 /bioclipse2/trunk/plugins/n​et.bioclipse.balloon.tests/ (5 files in 3 dirs): Added tests for SDF, SMILES, and CML files when generating 3D with balloon. SMILES currently fails.
09:17 olass edrin: 2.0.1
09:18 edrin olass: can you update it to 2.0.5 ?
09:18 olass no
09:18 olass no provileges for that
09:18 olass I could request it
09:18 olass if important
09:18 olass but might take a while
09:18 olass why so?
09:18 edrin ok, not sure if it is important
09:19 olass let me know
09:19 edrin we currently have problems we cannot trace
09:19 edrin for certain xmpp services that are hosting several HUGE XML schemata
09:22 edrin probably it is the JSO library
09:42 olass edrin: can we do a workaround and submit the article anyway?
09:42 olass or remove some services?
09:42 edrin I'm trying
09:42 olass we need to submit that article asap
09:42 edrin I am trying to find a workaround
09:42 olass good
09:42 edrin it's most likely JSO
09:47 edrin ok, I found a workaround
09:48 edrin I don't know why this helps but at least it helps
09:52 CIA-40 bioclipse: edrin_t * r10042 /xws/trunk/xws4j/src/net/biocli​pse/xws/xmpp/XMLConverter.java: Removed re-use of dom importers and exporters as this is causing an untraceable bug (mem leak).
09:52 edrin good...
10:14 CIA-40 bioclipse: edrin_t * r10043 /bioclipse2/trunk/plugins/net.bioclipse.xws4j/ (7 files in 3 dirs): updated to current xws
10:24 edrin olass: can you replace the xws4j.jar used for all the services on the ws1 server?
10:40 edrin egonw: I got a workaround, see mail
10:56 egonw edrin: ack
10:56 * egonw just smincked as vicious pirate
10:56 egonw har har har
10:59 edrin hhehe
10:59 edrin egonw: you *could* put a pic on your chem-bla blog :)
10:59 edrin ;)
11:23 egonw edrin: yes, was thinking about that :)
11:29 edrin1 joined #bioclipse
11:38 CIA-40 bioclipse: edrin_t * r10044 /xws/trunk/xws4j-bio-xml-services/src/b​io/xml/echofunctions/EMBLServices.java: renamed xws function name
11:39 CIA-40 bioclipse: edrin_t * r10045 /xws/trunk/xws4j-bio-xml-services/src/net/bioc​lipse/xws/component/functions/Functions.java: disabled OME because xsd global type not adapted yet
12:05 Gpox joined #bioclipse
13:34 edrin joined #bioclipse
14:10 edrin egonw: do you have time to update xws4j.jar on server?
15:30 egonw edrin: yes
15:31 egonw edrin: ping
15:31 egonw around?
15:50 egonw edrin: OK, can confirm that getting the schema for generate3Dcoordinates is now working
15:51 egonw I don't quite understand what you 'fixed', but might ask later...
16:06 stain_ joined #bioclipse
16:11 edrin egonw: I am available now
16:11 egonw I'm about to go for dinner
16:11 egonw updated the xws4j lib
16:11 edrin ok, thanks
16:11 egonw generate3Dcoord seems to work properly now
16:11 egonw bbl
16:11 edrin egonw great :)
16:11 edrin ok
16:11 edrin cu
17:26 Gpox joined #bioclipse
17:47 lc joined #bioclipse
17:48 lc hi zarah
17:49 lc have you seen the guys?
17:49 lc zarah?
17:49 edrin lc?
17:49 edrin lc who are you?
17:50 lc lars
17:50 lc just tuned in to see if ola or arvid was here
17:50 edrin ah
17:50 edrin ola was here this morning
17:51 edrin what is the nick of arvid?
17:51 Gpox Gpox :)
17:51 lc i don't know i'm new to this
17:51 lc Gpox == arvid?
17:51 edrin ah
17:51 Gpox yes
17:52 edrin lc: are you a new Bioclipse developer?
17:52 lc bra det var egentligen dig jag ville fraga en sak arvid om det gar bra pa svenska?
17:52 lc no
17:53 Gpox vist det går bra
17:53 lc jag sag ditt mejl pa bugzilla om att testa bindningarna som forsvann i windoze...
17:54 lc ..men jag vet inte var och hur jag kan plocka hem en version av bioclipse som jag kan testa. vet du?
17:54 edrin Leider spreche ich kein Schewdisch
17:54 edrin Schwedisch
17:55 lc sorry, i have a specific question for arvid.
17:55 lc about a bug i filed.
17:56 edrin ok
17:57 Gpox bortsätt från att bygga själv är att vänta på nästa beta releas antar jag
17:57 lc ok, da far jag nog vanta till nasta release.
17:57 Gpox vhich bug was it?
17:58 lc http://pele.farmbio.uu.se/cgi-b​in/bugzilla/show_bug.cgi?id=905
17:58 zarah lc's link is also http://tinyurl.com/c9ql3g
17:59 Gpox @pz 905
17:59 zarah http://pele.farmbio.uu.se/cgi-b​in/bugzilla/show_bug.cgi?id=905
17:59 lc bonds not showing in windows
18:00 lc det ar bra att jag fick kontakt med dig da vet du att det inte hander nat med den buggen forran nasta release.
18:01 lc ok that's it for me. have a nice evening.
18:02 lc bye zarah
18:03 lc bye bye everyone
18:03 Gpox bye
19:01 ChanServ joined #bioclipse
21:05 CIA-40 bioclipse: edrin_t * r10046 / (xws/ xws_moved_to_xws4j.sf.net/):

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