Camelia, the Perl 6 bug

IRC log for #bioclipse, 2009-05-06

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All times shown according to UTC.

Time Nick Message
04:21 egonw joined #bioclipse
06:12 olass joined #bioclipse
06:12 olass moin
06:12 zarah hi olass
06:12 olass hej
06:12 olass god morgon
06:12 olass egonw: god morgon
06:45 egonw joined #bioclipse
06:49 Gpox joined #bioclipse
06:50 rojasm joined #bioclipse
07:06 egonw @pz periodic
07:06 zarah [1013] NPE in PeriodicTableElement       http://tinyurl.com/dzhdyy
07:06 zarah Entire list at http://tinyurl.com/dl5um4
07:11 olass joined #bioclipse
07:11 egonw moin
07:11 zarah ni hao egonw
07:12 olass *hrmf*
07:12 egonw huh?
07:12 * olass had to reboot
07:13 olass many weeks since
07:13 olass annoying
07:13 olass but things just started to become so slow...
07:16 CIA-40 bioclipse: ospjuth * r10088 /bioclipse2/trunk/plugins/net.bioclipse.xws4j/sr​c/net/bioclipse/xws4j/business/IXwsManager.java: Added @PublishedClass annotation for manager interface.
07:17 egonw ha, sounds like windows :)
07:17 egonw http://pele.farmbio.uu.se/pubchem/
07:17 zarah egonw's link is also http://tinyurl.com/crnw4d
07:17 egonw 5.5M compounds in the DB now
07:18 egonw so, that's about 20%
07:23 CIA-40 bioclipse: ospjuth * r10089 /bioclipse2/trunk/plugins/net.bioclipse.cd​k.business/src/net/bioclipse/cdk/business/ (CDKManager.java ICDKManager.java): Replaced BioList with List as method parameter since BioList is an implementation of the List interface.
07:26 Gpox joined #bioclipse
07:32 egonw fika
07:50 jonalv joined #bioclipse
07:51 egonw hi jonalv
08:00 edrin joined #bioclipse
08:02 edrin hi
08:02 zarah hi edrin
08:02 zarah edrin: You have new messages. Write '/msg zarah @messages' to read them.
08:02 edrin @msg
08:03 zarah edrin: 16 h 37 m 23 s ago, olass said please mark bugs as finished when you have solved them
08:03 zarah edrin: 16 h 37 m 1 s ago, olass said else they do not show up in my queries so I can confirm and close them
08:03 olass hi edrin
08:03 edrin hi olass
08:03 olass I see you have marked bugs as fixed
08:03 olass thanks
08:04 olass and good job
08:18 jonalv egonw: are you planning to look at my branch today? :)
08:38 masak joined #bioclipse
09:00 jonalv egonw: ping
09:01 olass jonalv: egonw is in a tel conf
09:04 jonalv olass: ah so I guess that is a "no" then :)
09:58 egonw jonalv: "What has Archaeology got to do with Drug Development?" 15:15, C2:301
11:07 egonw lunch time
11:12 maclean joined #bioclipse
11:40 CIA-40 bioclipse: ospjuth * r10090 /bioclipse2/trunk/plugins/net.bioclipse.balloo​n.business/src/net/bioclipse/balloon/business/ (BalloonManager.java IBalloonManager.java): Some imports and cleanup and publishedclass addition.
12:01 egonw many Bioclipse/XMMP scripts at: http://pele.farmbio.uu.se/xmp​p-services/index.php/Services
12:01 zarah egonw's link is also http://tinyurl.com/cv7eyu
12:37 CIA-40 bioclipse: goglepox * r10091 /bioclipse2/trunk/plugins/net.bioclips​e.cdk.business/src/net/bioclipse/cdk/d​omain/ChemObjectPropertySource.java: Added support for IElement as propertysource
12:37 CIA-40 bioclipse: goglepox * r10092 /bioclipse2/trunk/plugins/net.b​ioclipse.cdk.ui.periodictable/ (15 files in 8 dirs): New plugin with a periodic table view.
12:38 CIA-40 bioclipse: goglepox * r10093 /bioclipse2/trunk/plugins/net.bioclipse.c​dk.ui.periodictable/src/net/bioclipse/cdk​/ui/periodictable/PeriodicTableView.java: Removed Lanthanides and Actinides pending bug 1013
12:38 zarah bug #1013 | http://tinyurl.com/dzhdyy
12:38 CIA-40 bioclipse: goglepox * r10094 /bioclipse2/trunk/plugins/net.bioclipse.c​dk.ui.periodictable/src/net/bioclipse/cdk​/ui/periodictable/PeriodicTableView.java: Refactored font handling of PerodicTableView
12:39 CIA-40 bioclipse: goglepox * r10095 /bioclipse2/trunk/plugins/ (2 files in 2 dirs):
12:39 CIA-40 bioclipse: Generified CDKChemObject
12:39 CIA-40 bioclipse: new CDKChemObject<T extends IChemobject>(T);
12:39 CIA-40 bioclipse: getChemObject() return T
12:39 CIA-40 bioclipse: goglepox * r10096 /bioclipse2/trunk/plugins/net.bioclipse.c​dk.ui.periodictable/src/net/bioclipse/cdk​/ui/periodictable/PeriodicTableView.java: Added marker for currently selected element;
12:40 CIA-40 bioclipse: goglepox * r10097 /bioclipse2/trunk/plugins/net.bioclipse.cd​k.jchempaint/src/net/bioclipse/cdk/jchempa​int/widgets/JChemPaintEditorWidget.java: Updated scrolling fixes bug #783
12:40 zarah bug #783 | http://tinyurl.com/d7dsek
12:50 egonw edrin:
12:50 egonw Query: Farnesol
12:50 egonw Molecule SMILES: CC(=CCC\C(=C\CC\C(=C\CO)\C)\C)C
12:50 egonw Lipinski Rule of Five: 0
12:50 edrin and this means?
12:51 edrin does this mean you can eat it and nothing happens?
12:51 egonw no lipinski violations
12:51 egonw no, means about nothing
12:51 egonw but it just is a catchy name :)
12:52 egonw let me tune the script a bit, and I'll blog about it
12:52 egonw thanx for the chalenge :)
12:55 olass Gpox: !!
12:55 olass Gpox: you fixed the scrolling!?
12:55 olass \o/
12:55 * olass is updating and testing
12:55 olass so good timing
12:56 * olass will build a release for xmpp
12:56 egonw http://gist.github.com/107507
12:59 * jonalv got the first method on the gist manager to work with this new way of setting up things
12:59 jonalv egonw: pushed that code.
12:59 jonalv egonw: do you have a minute?
13:00 * olass hopes egonw has a minute
13:00 * olass hopes egonw has a minute for jonalv
13:00 egonw jonalv++
13:01 olass Gpox++
13:01 olass jonalv++
13:01 olass egonw++ //nice gist
13:01 olass olass++ //for giving out a lot of karma
13:01 zarah shame on you, olass, giving yourself karma like that
13:01 olass woops
13:01 olass :-0
13:03 maclean olass++
13:04 olass :)
13:07 * egonw is heading to the talk "Archeology in Drug Discovery"
13:07 egonw curious what that is about :)
13:07 egonw bbl
13:17 CIA-40 bioclipse: goglepox * r10098 /bioclipse2/trunk/plugins/net.bioclipse.​cdk.jchempaint/src/net/bioclipse/cdk/jch​empaint/editor/SWTMouseEventRelay.java:
13:17 CIA-40 bioclipse: Added zooming when shift is pressed
13:17 CIA-40 bioclipse: Fixes bug #910
13:17 zarah bug #910 | http://tinyurl.com/d6c6z8
13:32 masak joined #bioclipse
13:32 maclean joined #bioclipse
13:33 rajarshi joined #bioclipse
13:55 CIA-40 bioclipse: ospjuth * r10099 /bioclipse2/trunk/plugins/net.bioclipse.gist/src​/net/bioclipse/gist/business/IGistManager.java: Added @PublishedClass.
14:07 CIA-40 bioclipse: ospjuth * r10100 /bioclipse2/trunk/plugins/ (27 files in 27 dirs): Set version to 2.0.0B20090506.
14:07 CIA-40 bioclipse: ospjuth * r10101 /bioclipse2/trunk/plugins/net.bioc​lipse.logger/META-INF/MANIFEST.MF: Set version to 2.0.0B20090506.
14:07 CIA-40 bioclipse: ospjuth * r10102 /bioclipse2/trunk/ (10 files in 9 dirs): Set version to 2.0.0B20090506.
14:08 CIA-40 bioclipse: ospjuth * r10103 /bioclipse2/trunk/plugins/ (5 files in 5 dirs): Set version to 2.0.0B20090506.
14:12 maclean joined #bioclipse
14:13 CIA-40 bioclipse: ospjuth * r10104 /bioclipse2/trunk/features/ (13 files in 13 dirs): Set version to 2.0.0B20090506.
14:15 CIA-40 bioclipse: ospjuth * r10105 /bioclipse2/trunk/plugins/net.bi​oclipse.xws4j/build.properties: Added cheat sheets to build.properties.
14:43 edrin stain_: available?
15:52 egonw masak: ping
15:52 egonw arond?
15:52 egonw too late
15:53 masak aye.
15:56 edrin left #bioclipse
15:57 rojasm left #bioclipse
16:23 CIA-40 bioclipse: carl_masak * r10106 /bioclipse2/trunk/plugins/net.bioclip​se.scripting.ui/src/net/bioclipse/scr​ipting/ui/views/JsConsoleView.java:
16:23 CIA-40 bioclipse: [JsConsoleView] added a few null checks (edrin++)
16:23 CIA-40 bioclipse: Fixes #1016.
16:23 zarah bug #1016 | http://tinyurl.com/ck9nr4
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