| Time |
Nick |
Message |
| 06:29 |
|
egonw joined #bioclipse |
| 06:29 |
egonw |
moin |
| 06:48 |
egonw |
relocating |
| 06:54 |
|
egonw joined #bioclipse |
| 07:08 |
|
Gpox joined #bioclipse |
| 07:09 |
egonw |
hi Gpox |
| 07:09 |
Gpox |
hi egonw |
| 07:09 |
egonw |
the group is now listening to Ola mid-term presentation |
| 07:11 |
Gpox |
mid-term isn't that a bit late? ;) |
| 07:53 |
egonw |
ola is done |
| 07:53 |
egonw |
now Martin's turn |
| 08:13 |
egonw |
battery is running out |
| 08:24 |
|
shk3 joined #bioclipse |
| 08:30 |
CIA-40 |
bioclipse: goglepox * r10886 /bioclipse2/trunk/plugins/ (2 files in 2 dirs): |
| 08:30 |
CIA-40 |
bioclipse: Made JCP toolbar visible when JCP context is visible. |
| 08:30 |
CIA-40 |
bioclipse: Also made MultiPageMoleculesEditorPart set context |
| 08:30 |
CIA-40 |
bioclipse: when switching to JCP. |
| 08:30 |
CIA-40 |
bioclipse: Fixes bug #1049 |
| 08:30 |
zarah |
bug #1049 | http://tinyurl.com/nrqyeh |
| 08:43 |
|
egonw joined #bioclipse |
| 08:44 |
egonw |
shk3: at some point you were looking at a SaveAs dialog with drop down box for supported IO types |
| 08:44 |
egonw |
did anything come out of that? |
| 08:44 |
egonw |
or did you abondon that idea? |
| 08:45 |
shk3 |
did not do anything |
| 08:45 |
egonw |
OK |
| 08:45 |
egonw |
I'll work on it |
| 08:45 |
shk3 |
good |
| 08:45 |
shk3 |
I am trying to sort out jobs etc. stuff |
| 08:47 |
|
Gpox joined #bioclipse |
| 08:58 |
|
masak joined #bioclipse |
| 08:59 |
|
jonalv joined #bioclipse |
| 09:31 |
jonalv |
Gpox: regardeing @pz 1029 |
| 09:32 |
jonalv |
zarah: you really should pick that up... |
| 09:32 |
zarah |
jonalv: that was not so easy for a little bot to understand |
| 09:35 |
Gpox |
@pz 1029 |
| 09:35 |
zarah |
http://pele.farmbio.uu.se/cgi-bin/bugzilla/show_bug.cgi?id=1029 |
| 09:36 |
jonalv |
@pz 1049 |
| 09:36 |
zarah |
http://pele.farmbio.uu.se/cgi-bin/bugzilla/show_bug.cgi?id=1049 |
| 09:36 |
jonalv |
Gpox: sry... |
| 09:36 |
jonalv |
Gpox: I reopened that bug now... |
| 09:37 |
CIA-40 |
bioclipse: goglepox * r10887 /bioclipse2/trunk/plugins/ (7 files in 4 dirs): |
| 09:37 |
CIA-40 |
bioclipse: Chage Color from org.eclipse.swt to java.awt.Color |
| 09:37 |
CIA-40 |
bioclipse: Because that is what the JCP renderer uses to pass |
| 09:37 |
CIA-40 |
bioclipse: around a color. |
| 09:38 |
CIA-40 |
bioclipse: goglepox * r10888 /bioclipse2/trunk/plugins/net.bioclipse.cdk.jchempaint/src/net/bioclipse/cdk/jchempaint/generators/SubStructureGenerator.java: New generator to visulize substructures |
| 09:38 |
CIA-40 |
bioclipse: goglepox * r10889 /bioclipse2/trunk/plugins/net.bioclipse.cdk.jchempaint/src/net/bioclipse/cdk/jchempaint/editor/JChemPaintEditor.java: |
| 09:38 |
CIA-40 |
bioclipse: Added use of SubStructureGenerator for visualization |
| 09:38 |
CIA-40 |
bioclipse: of sub structures |
| 09:38 |
CIA-40 |
bioclipse: Fixes bug #1088 |
| 09:38 |
zarah |
bug #1088 | http://tinyurl.com/le5fg5 |
| 09:42 |
|
maclean joined #bioclipse |
| 09:42 |
CIA-40 |
bioclipse: goglepox * r10890 /bioclipse2/trunk/plugins/net.bioclipse.cdk.jchempaint/plugin.xml: Commented out closest to center of mass generator |
| 11:00 |
CIA-40 |
bioclipse: goglepox * r10891 /bioclipse2/trunk/plugins/net.bioclipse.cdk.jchempaint/src/net/bioclipse/cdk/jchempaint/business/JChemPaintGlobalPropertiesManager.java: |
| 11:00 |
CIA-40 |
bioclipse: Made JChemPaintGlobalPropertiesManager pickup JCP in |
| 11:00 |
CIA-40 |
bioclipse: MultiPartMoleculesEditorPage |
| 11:00 |
CIA-40 |
bioclipse: goglepox * r10892 /bioclipse2/trunk/plugins/net.bioclipse.cdk.jchempaint/src/net/bioclipse/cdk/jchempaint/widgets/ (GeneratorsView.java JChemPaintEditorWidget.java): |
| 11:00 |
CIA-40 |
bioclipse: Added check for null |
| 11:00 |
CIA-40 |
bioclipse: To allow JChemPaintEditorWidget.setInput() to take null as an argument |
| 11:01 |
CIA-40 |
bioclipse: goglepox * r10893 /bioclipse2/trunk/plugins/net.bioclipse.cdk.jchempaint/src/net/bioclipse/cdk/jchempaint/editor/JChemPaintEditor.java: |
| 11:01 |
CIA-40 |
bioclipse: Fixed ignore for same part selections |
| 11:01 |
CIA-40 |
bioclipse: It no works for JCP embeded in MPMoleculeEditorPart |
| 11:01 |
CIA-40 |
bioclipse: Resolves bug #1049 |
| 11:01 |
zarah |
bug #1049 | http://tinyurl.com/nrqyeh |
| 11:10 |
CIA-40 |
bioclipse: jonalv * r10894 /bioclipse2/trunk/plugins/ (3 files in 3 dirs): Added DS tests to AllUnstableManagers plugins tests suite |
| 11:11 |
maclean |
Gpox : interesting generator view, but it seems like it would be for 'expert' users (IE: developers) only... |
| 11:12 |
Gpox |
yeah, it is mostly for me to check what generators are rendered and in what order |
| 11:12 |
maclean |
ah, right. |
| 11:12 |
maclean |
in which order...hmmm |
| 11:12 |
maclean |
perhaps altering the order using the view? :) |
| 11:13 |
Gpox |
one could clean it up a bit, and allow to toggle the visibility of the contributed extensionpoint generators |
| 11:14 |
maclean |
that's true. |
| 11:14 |
Gpox |
maybe it would requier that either the list from Renderer is not a copy or that there is a set generators on Renderer |
| 11:15 |
maclean |
currently the renderer method returns a new list wrapping the generator list - does this make it immutable? |
| 11:15 |
maclean |
a setGenerators method seems reasonable. |
| 11:16 |
maclean |
there had not been a use-case for this before, so I hadn't included such a method, but I don't object to it. |
| 11:16 |
maclean |
anyway.. |
| 11:16 |
* maclean |
goes back to backtracking |
| 11:19 |
CIA-40 |
bioclipse: goglepox * r10895 /bioclipse2/trunk/plugins/net.bioclipse.cdk.ui.sdfeditor/src/net/bioclipse/cdk/ui/sdfeditor/business/IMoleculeTableManager.java: Added uiJob to calculateProperty(...) |
| 11:19 |
CIA-40 |
bioclipse: goglepox * r10896 /bioclipse2/trunk/plugins/net.bioclipse.cdk.ui.sdfeditor/src/net/bioclipse/cdk/ui/sdfeditor/ (2 files in 2 dirs): |
| 11:19 |
CIA-40 |
bioclipse: Use uiJob to update moleculesTable when property is calculated |
| 11:19 |
CIA-40 |
bioclipse: CalculatePropertyHandler now inserts the calculated |
| 11:19 |
CIA-40 |
bioclipse: coulmn as the first column in the table. |
| 11:19 |
CIA-40 |
bioclipse: Fixes bug #1144 |
| 11:19 |
zarah |
bug #1144 | http://tinyurl.com/krv9e7 |
| 11:20 |
Gpox |
Might be cleander just to return the real list, it becomes a litle bit more like a hack to replace the generators but atleast you are aware you are changing how the renderer renders thing |
| 11:20 |
Gpox |
with setGenerators() you just change it poof. when onnly you wanted to modify one |
| 11:23 |
maclean |
true. so like : renderer.getGenerators().add(new MyGenerator()); |
| 11:24 |
Gpox |
yes |
| 11:25 |
maclean |
I guess a truly generic way of doing things would be for generators to know what type of ChemObject they handle |
| 11:25 |
maclean |
so there could be a renderer method .getGeneratorFor(IChemObject object); |
| 11:26 |
maclean |
which would require a method in the IGenerator interface 'boolean canHandle(IChemObject object)' |
| 11:27 |
maclean |
although that gets complex for generators that handle more than one chemobject at a time, or things that are not chemobjects. |
| 11:28 |
Gpox |
exactly, getGenerators() is an easy to implement and powerfull way to modify what generators are used |
| 11:29 |
Gpox |
some of my generators don't even use the atomcontainer that is passed to it |
| 11:29 |
maclean |
indeed. I saw the SubStructureGenerator. |
| 11:31 |
Gpox |
overriding the createGenerator method on JCPWidget is the only way right now to insert generators in bioclipse |
| 11:48 |
|
jonalv joined #bioclipse |
| 11:59 |
CIA-40 |
bioclipse: carl_masak * r10897 /bioclipse2/trunk/plugins/net.bioclipse.scripting.ui/src/net/bioclipse/scripting/ui/views/JsConsoleView.java: |
| 11:59 |
CIA-40 |
bioclipse: [JsConsoleView] reviewed r10869 |
| 11:59 |
CIA-40 |
bioclipse: - replaced testing membership in a List with unconditional adding to a Set |
| 11:59 |
CIA-40 |
bioclipse: - small whitespace and braces changes |
| 11:59 |
CIA-40 |
bioclipse: Resolves #1146. |
| 12:02 |
CIA-40 |
bioclipse: carl_masak * r10898 /bot/trunk/zarah.pl: [zarah] now recognizes 'resolves' as a bug keyword |
| 12:03 |
masak |
@reboot |
| 12:03 |
|
zarah joined #bioclipse |
| 12:07 |
maclean |
resolves #100 |
| 12:07 |
maclean |
curses. |
| 12:09 |
maclean |
a 'resolve' keyword would be great : "@resolve bug 100" |
| 12:09 |
maclean |
(or solve, perhaps) |
| 12:12 |
masak |
maclean: zarah only triggers on those keywords when they're uttered by other bots. |
| 12:12 |
maclean |
ohhh. |
| 12:12 |
maclean |
@kill-all-humans |
| 12:12 |
masak |
maclean: she now has qw<bug fixes addresses resolves> |
| 12:18 |
Gpox |
dose she have a becomeSkynetCost yet? |
| 12:23 |
masak |
Gpox: oh noes, I forgot that one! o_O |
| 12:24 |
Gpox |
it necessary especially with all the @kill-all-humans lately |
| 12:25 |
CIA-40 |
bioclipse: carl_masak * r10899 /bot/trunk/zarah.pl: [zarah] added becomeSkynetCost |
| 12:25 |
masak |
phew. |
| 12:29 |
Gpox |
masak++ <!-- for preventing Skynet --> |
| 12:29 |
masak |
Gpox++ -- XML comments! :) |
| 12:41 |
|
olass joined #bioclipse |
| 12:41 |
olass |
hi |
| 12:41 |
zarah |
oh hai olass |
| 12:42 |
* olass |
has been doing boring administrative stuff today |
| 12:43 |
jonalv |
olass: http://wiki.bioclipse.net/index.php?title=Architecture |
| 12:43 |
zarah |
jonalv's link is also http://tinyurl.com/la8u8v |
| 12:43 |
jonalv |
olass: I am not so good at writing longtexts on this subject it seems |
| 12:43 |
olass |
jonalv: great start |
| 12:43 |
jonalv |
olass: maybe you can add soemthing? :) |
| 12:43 |
olass |
sure |
| 12:43 |
olass |
will do some |
| 12:43 |
olass |
and send the link back for completion |
| 12:43 |
olass |
ok? |
| 12:43 |
jonalv |
perfect |
| 12:45 |
|
edrin joined #bioclipse |
| 12:47 |
maclean |
architecture, eh? olass : would you like some sort of diagram to illustrate? |
| 12:47 |
olass |
maclean: yes please |
| 12:47 |
* maclean |
is a keen systems architecture drawer... |
| 12:47 |
olass |
that would be a great addition |
| 12:48 |
olass |
jonalv: and please add the image from the german magazine |
| 12:48 |
jonalv |
olass: will do |
| 12:48 |
jonalv |
(now where did I put that one? ;) |
| 12:49 |
olass |
jonalv: ball is back with you, http://wiki.bioclipse.net/index.php?title=Architecture |
| 12:49 |
zarah |
olass's link is also http://tinyurl.com/la8u8v |
| 12:52 |
masak |
olass: I found some things I'd like to change when you're done editing. |
| 12:53 |
* olass |
is not editing, the ball is back with jonalv |
| 12:53 |
masak |
olass: OSGi is spelled with a small 'i'. |
| 12:53 |
jonalv |
masak: go ahead |
| 12:53 |
olass |
good point |
| 12:53 |
olass |
did not know that |
| 12:56 |
masak |
jonalv: done. lock released. |
| 13:03 |
CIA-40 |
bioclipse: carl_masak * r10900 /bioclipse2/trunk/plugins/net.bioclipse.scripting.ui/src/net/bioclipse/scripting/ui/views/JsConsoleView.java: [JsConsoleView] fixed error message (fixes #1147) |
| 13:04 |
zarah |
bug #1147 | http://tinyurl.com/ndzso2 |
| 13:11 |
shk3 |
does this tell somebody something: |
| 13:11 |
shk3 |
loader constraints violated when linking org/apache/log4j/Logger class |
| 13:11 |
shk3 |
? |
| 13:13 |
CIA-40 |
bioclipse: ospjuth * r10901 /bioclipse2/trunk/plugins/net.bioclipse.ds/ (2 files in 2 dirs): Return empty atomcontainer instead of null when implementing ISubStructure. Solves #1151. |
| 13:43 |
CIA-40 |
bioclipse: shk3 * r10902 /bioclipse2/trunk/plugins/net.bioclipse.data.seneca/data/ (7 files in 2 dirs): more examples |
| 14:04 |
jonalv |
olass: I think we are nearing perfection: http://wiki.bioclipse.net/index.php?title=Architecture |
| 14:04 |
zarah |
jonalv's link is also http://tinyurl.com/la8u8v |
| 14:05 |
olass |
sweet |
| 14:06 |
maclean |
nice. what did you use? |
| 14:06 |
shk3 |
you are nearing perfection? |
| 14:06 |
shk3 |
both of you? |
| 14:07 |
shk3 |
I am looking forward to meet you again and see what changed |
| 14:07 |
jonalv |
maclean: sry? Oh the image? It's an old inkscape illustration |
| 14:07 |
maclean |
ohh. |
| 14:07 |
jonalv |
(I lost the bitmaps though...) |
| 14:07 |
jonalv |
so it will be a bit trixy to redo it... |
| 14:10 |
shk3 |
can I ask a question about this bioclipseuijob stuff? |
| 14:12 |
jonalv |
shk3: okey? |
| 14:13 |
shk3 |
i had a look at loadMolecule in cdkmanager |
| 14:13 |
shk3 |
ICDKManager has |
| 14:13 |
shk3 |
public void loadMolecule( IFile file, |
| 14:13 |
shk3 |
BioclipseUIJob<ICDKMolecule> bioclipseUIJob ); |
| 14:13 |
shk3 |
which method in CKDManager is this mapped to? |
| 14:14 |
shk3 |
public void loadMolecule( IFile file, |
| 14:14 |
shk3 |
BioclipseUIJob<ICDKMolecule> bioclipseUIJob ); |
| 14:14 |
shk3 |
? |
| 14:14 |
shk3 |
perhaps? |
| 14:14 |
shk3 |
sorry, wrong paste |
| 14:14 |
shk3 |
I meant: |
| 14:14 |
shk3 |
public List<ICDKMolecule> loadMolecules( IFile file, |
| 14:14 |
shk3 |
IProgressMonitor monitor ) |
| 14:14 |
masak |
shk3: please don't paste in-channel. :/ |
| 14:15 |
jonalv |
shk3: the loadMolecules method is a mess... IT should be rewritten for sanity but I sort of think it works right now. |
| 14:15 |
shk3 |
hm, ok |
| 14:15 |
shk3 |
bad example then |
| 14:16 |
jonalv |
&me takes a deep breatch and heads in to the mess to try and answer shk3s question |
| 14:16 |
shk3 |
my real question is what to do in seneca |
| 14:16 |
shk3 |
and I thought this could be an example |
| 14:16 |
shk3 |
I need to run something with a monitor which returns a value |
| 14:17 |
Gpox |
in IMoleculeTableManager there is createSDFIndex(IFile file, IBioclipseUIJob uiJob) and in MoleculeTableManager there is only createSDFIndex(IFile, IProgressMonitor) |
| 14:17 |
jonalv |
shk3: Hm I think you should have a look at the BioclipseUIJob approach |
| 14:17 |
jonalv |
that sounds like a good example to look at |
| 14:18 |
shk3 |
ok, I will look at this |
| 14:19 |
shk3 |
question: |
| 14:19 |
shk3 |
createSDFIndex in the IMoleculeTableManager has a return value, |
| 14:20 |
shk3 |
but his seems to be ignored when called. |
| 14:20 |
shk3 |
it is done via |
| 14:20 |
shk3 |
the runinui method of the job and getReturnValue, right? |
| 14:21 |
Gpox |
Row 238 in MoleculesEditor is the important one sdfIndex = getReturnValue() in runInUI() on the BioclipseUIJob |
| 14:21 |
Gpox |
yes |
| 14:21 |
shk3 |
ok, then I think I got it |
| 14:21 |
shk3 |
will try to use this in seneca |
| 14:21 |
shk3 |
and I will come back to you if there are problems |
| 14:21 |
shk3 |
thanks |
| 15:03 |
masak |
olass: http://wiki.bioclipse.net/index.php?title=Bioclipse2_release_plan looks like it might need some updating. |
| 15:03 |
zarah |
masak's link is also http://tinyurl.com/5guree |
| 15:04 |
olass |
indeed |
| 15:04 |
olass |
masak: updated |
| 15:04 |
masak |
olass++ |
| 15:04 |
olass |
:) that was easy karma |
| 15:05 |
shk3 |
jonalv: no success |
| 15:05 |
shk3 |
still blocking and the runInUI is never executed |
| 15:05 |
masak |
easy karma is the best. |
| 15:05 |
shk3 |
I get |
| 15:05 |
shk3 |
WARN - The MonitorContainer could not find a monitor connected to current thread so returning a NullProgressMonitor |
| 15:05 |
shk3 |
could that be a hint to the problem? |
| 15:06 |
jonalv |
shk3: yes it at least sounds like something you don't want... |
| 15:07 |
jonalv |
shk3: have you commited? What method is this? How do I reproduce? |
| 15:08 |
shk3 |
would be greate if you can have a look |
| 15:08 |
shk3 |
committing |
| 15:08 |
shk3 |
mom |
| 15:08 |
shk3 |
you need the seneca examples |
| 15:09 |
shk3 |
I think you already got these? |
| 15:09 |
CIA-40 |
bioclipse: shk3 * r10903 /bioclipse2/trunk/plugins/net.bioclipse.seneca/src/net/bioclipse/seneca/ (7 files in 5 dirs): tried to use a bioclispeuijob for executing jobs |
| 15:11 |
shk3 |
open the hko2 folder and hko2.sjs file |
| 15:11 |
shk3 |
hit the start button in tool bar |
| 15:11 |
shk3 |
the method is executeJob in the managers in net.bioclipse.seneca.business |
| 15:12 |
jonalv |
shk3: I need seneca nad what else? |
| 15:12 |
jonalv |
speclipse only? |
| 15:12 |
maclean |
seneca plugin, seneca sample data plugin, speclipse... |
| 15:13 |
maclean |
cheminformatics plugin er.. |
| 15:13 |
maclean |
feature, rather. |
| 15:13 |
shk3 |
if you run by features, the seneca feature should do it |
| 15:13 |
jonalv |
but the sample data ahs not changed or has it? |
| 15:14 |
maclean |
some new sample data, yes |
| 15:14 |
jonalv |
hm why don't I get the sample data? |
| 15:14 |
maclean |
when you run? |
| 15:14 |
jonalv |
is that a sinlge feature of it's own? |
| 15:14 |
maclean |
no |
| 15:14 |
maclean |
it's in the seneca_feature... |
| 15:14 |
jonalv |
okey I didn't have it under seneca |
| 15:15 |
jonalv |
ah it's under data |
| 15:17 |
jonalv |
hm that seemed broken indeed... |
| 15:17 |
shk3 |
sorry, i don't understand this |
| 15:17 |
shk3 |
what do you mean with "it's under data"? |
| 15:18 |
jonalv |
the new wizard is under data not uinder seneca. I don't know which is best. Can it be in both? |
| 15:18 |
shk3 |
ok |
| 15:18 |
shk3 |
well, it seems to be a pattern to have it under data |
| 15:19 |
shk3 |
I once tried putting things in two places, but didn't succeed |
| 15:19 |
jonalv |
okey |
| 15:20 |
jonalv |
what is the name of the interface method? I can't find any executeJob method in the interface... |
| 15:20 |
shk3 |
I put it in IJavaSenecaManager |
| 15:21 |
shk3 |
and IJavascriptSenecaManager |
| 15:21 |
jonalv |
shk3: oh, intresting |
| 15:21 |
shk3 |
well, I couldn't execute it on javascript |
| 15:21 |
shk3 |
when only having the method with BioclipseUIJob |
| 15:21 |
jonalv |
so you can't execute a job from AJvaScript? |
| 15:21 |
shk3 |
in the interace |
| 15:21 |
shk3 |
no, go some error |
| 15:21 |
shk3 |
sort of method not found |
| 15:22 |
shk3 |
but would need to reproduce this |
| 15:22 |
jonalv |
mhm |
| 15:22 |
jonalv |
shk3: well it's still not void... |
| 15:23 |
shk3 |
no, but createSDFIndex isn't as well |
| 15:23 |
shk3 |
I followed that |
| 15:24 |
jonalv |
shk3: yes it is |
| 15:25 |
jonalv |
row 32 in IMoleculeTableManager |
| 15:25 |
shk3 |
ah hm, perhaps i didn't update |
| 15:26 |
jonalv |
:) |
| 15:26 |
shk3 |
in my workspace, it is not void |
| 15:26 |
shk3 |
btw, you can have a new wizard in two categories, but it seems you need to repeat the whole <wizard> entry. |
| 15:26 |
shk3 |
not too nice |
| 15:26 |
jonalv |
okey well try with having it void. If it's not void it can't be run as a job since it must return... |
| 15:27 |
shk3 |
ok, i will upate |
| 15:27 |
jonalv |
shk3: might be wroth it though... |
| 15:27 |
jonalv |
brb |
| 15:27 |
shk3 |
and compare again with moleculetablemanager and retry |
| 15:27 |
shk3 |
yes, think so |
| 15:27 |
shk3 |
other data wizards should use that as well |
| 15:36 |
shk3 |
jonalv: i am still struggling to understand how things are supposed to work in js |
| 15:37 |
shk3 |
when the method is void |
| 15:38 |
jonalv |
shk3: you define another method which is not coid that you publish |
| 15:39 |
jonalv |
so one method for Java and one for JavaScript. (Both can be called from both though) and they both will get redirected to the same implementation |
| 15:40 |
shk3 |
ok |
| 15:41 |
shk3 |
i wait for the update |
| 15:41 |
jonalv |
shk3: oh and these classes are wider than 80 cols I am having to scroll horizontally... :( |
| 15:42 |
jonalv |
shk3: sry ar eyou waiting for me? |
| 15:42 |
shk3 |
no |
| 15:42 |
shk3 |
waiting for svn |
| 15:43 |
jonalv |
ah |
| 15:44 |
shk3 |
which revision of net.sf.cdk.ui.sdfeditor should I have? |
| 15:44 |
jonalv |
uhm beats me. The latest? |
| 15:45 |
shk3 |
which one do you have? |
| 15:45 |
jonalv |
shk3: uhm how do I find that out? |
| 15:45 |
jonalv |
hang on... |
| 15:45 |
shk3 |
right click, properties, svn |
| 15:45 |
shk3 |
or so |
| 15:46 |
jonalv |
shk3: git-svn... |
| 15:46 |
jonalv |
10903 but that's the root |
| 15:46 |
jonalv |
I hope thats the same all the way... |
| 15:46 |
shk3 |
well, i wait for the update to be done |
| 15:46 |
jonalv |
yea |
| 15:47 |
jonalv |
svn--? |
| 15:49 |
shk3 |
ok, got latest sdfeditor |
| 15:50 |
shk3 |
I will try to make seneca manager the same style |
| 15:50 |
jonalv |
good |
| 15:52 |
shk3 |
ok, so the implementation has return value and bioclipseuijob |
| 15:52 |
shk3 |
and it is used for both methods in the interface, right? |
| 15:52 |
jonalv |
yea |
| 15:52 |
jonalv |
(sure hope so) |
| 15:52 |
jonalv |
:) |
| 15:53 |
shk3 |
shouldn't/couldn't we put the one with return value in js interface |
| 15:53 |
shk3 |
and the other one in java interface? |
| 15:53 |
jonalv |
shk3: I guess you might... |
| 15:53 |
shk3 |
ok, but more important is that it works at all |
| 15:53 |
shk3 |
... |
| 15:53 |
jonalv |
yea |
| 15:54 |
shk3 |
going to test now |
| 16:00 |
jonalv |
shk3: iz it woeking? |
| 16:00 |
maclean |
no lolspeak |
| 16:01 |
masak |
maclean: what u mean? |
| 16:01 |
maclean |
oh, right, just erratic typing. never mind. |
| 16:02 |
masak |
kthx. |
| 16:02 |
maclean |
-_- |
| 16:03 |
shk3 |
not really |
| 16:03 |
shk3 |
just trying to figure out what's going on |
| 16:03 |
shk3 |
shall I commit so that you can have a look as well? |
| 16:03 |
jonalv |
I MITE HAS SPENT 2 MUTCH TIEM ON I CAN HAS CHEEZBURGER |
| 16:03 |
jonalv |
shk3: oki |
| 16:03 |
maclean |
I blame mofaha |
| 16:04 |
shk3 |
jonalv: |
| 16:04 |
shk3 |
I see the following problems |
| 16:04 |
shk3 |
- still blocking, no monitor shown in java |
| 16:04 |
shk3 |
- monitor shown in js |
| 16:05 |
CIA-40 |
bioclipse: shk3 * r10904 /bioclipse2/trunk/plugins/net.bioclipse.seneca/src/net/bioclipse/seneca/business/ (3 files): upated the manager stuff to run in jobs |
| 16:05 |
shk3 |
in java, saving of the result fails |
| 16:05 |
shk3 |
with odd error |
| 16:05 |
shk3 |
- an in java, it's way to fast |
| 16:05 |
shk3 |
I don't think an elucidation is actually done |
| 16:05 |
shk3 |
but I will look at this later |
| 16:05 |
masak |
\⚉/ |
| 16:06 |
jonalv |
shk3: hm I guess I should have a look at what you are doing.. |
| 16:06 |
jonalv |
\⚉/++ |
| 16:06 |
jonalv |
karma \⚉/ |
| 16:06 |
zarah |
\⚉/ has a karma of 0 |
| 16:06 |
masak |
(\⚉/)++ |
| 16:06 |
masak |
karma \⚉/ |
| 16:07 |
zarah |
\⚉/ has a karma of 1 |
| 16:07 |
masak |
jonalv: that's how you do it. :) |
| 16:07 |
jonalv |
masak: yea I keep forgetting... |
| 16:07 |
masak |
yes. :) |
| 16:07 |
jonalv |
masak: we need to leave soon... |
| 16:07 |
Gpox |
karma / |
| 16:07 |
masak |
jonalv: good idea. |
| 16:07 |
zarah |
/ has a karma of 0 |
| 16:07 |
masak |
(/)++ |
| 16:07 |
masak |
karma / |
| 16:07 |
zarah |
/ has a karma of 1 |
| 16:08 |
masak |
Gpox: non-word characters simply don't register. |
| 16:08 |
jonalv |
masak: what is the reason for this? |
| 16:09 |
masak |
jonalv: I don't want random ASCII patterns to screw with karma ratings. |
| 16:09 |
masak |
so there are two mechanisms: |
| 16:09 |
masak |
one word++ |
| 16:09 |
masak |
and one (complicated arbitrary expression)++ |
| 16:10 |
jonalv |
hm but if the work is L337? |
| 16:11 |
masak |
then you do (L337)++ |
| 16:11 |
masak |
or you change the regular expression in zarah... |
| 16:11 |
jonalv |
masak: but would something bad happend if I changed the reg exp? |
| 16:12 |
masak |
who knows? :) |
| 16:12 |
masak |
but I don't think so. |
| 16:14 |
CIA-40 |
bioclipse: shk3 * r10905 /bioclipse2/trunk/plugins/ (3 files in 2 dirs): adde sample data wizard to the speclipse/seneca categories as well, apart from sample data |
| 16:18 |
CIA-40 |
bioclipse: shk3 * r10906 /bioclipse2/trunk/plugins/net.bioclipse.cml.tests/: ignoring bin |
| 16:28 |
shk3 |
jonalv: could you have a look at the problem with that job? |
| 16:28 |
shk3 |
I got 10 bugs or so assigned related to this. |
| 16:28 |
shk3 |
I am happy to help, but as long as I don't understand the whole thing, |
| 16:29 |
shk3 |
I can't do much. |
| 19:59 |
|
olass joined #bioclipse |
| 20:05 |
CIA-40 |
bioclipse: ospjuth * r10907 /bioclipse2/trunk/plugins/net.bioclipse.ds/ (11 files in 4 dirs): Updated to use java.awt.color (bug 1150). |
| 20:05 |
zarah |
bug #1150 | http://tinyurl.com/ngezw5 |
| 20:06 |
CIA-40 |
bioclipse: ospjuth * r10908 /bioclipse2/trunk/plugins/net.bioclipse.ds.signsig.bursi/src/net/bioclipse/ds/signsig/bursi/SignSicHit.java: Updated to use java.awt.color (bug 1150). |
| 20:06 |
zarah |
bug #1150 | http://tinyurl.com/ngezw5 |
