Camelia, the Perl 6 bug

IRC log for #bioclipse, 2009-06-11

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All times shown according to UTC.

Time Nick Message
04:07 Gpox joined #bioclipse
06:55 olass joined #bioclipse
07:32 CIA-40 bioclipse: ospjuth * r11259 /bioclipse2/trunk/plugins/net​.bioclipse.ds.dblookup.bursi/ (3 files in 2 dirs): Replaced data file with an SDF with no hydrogens.
08:29 CIA-40 bioclipse: ospjuth * r11260 /bioclipse2/trunk/plugins/​net.bioclipse.ds.lipinski/ (5 files in 2 dirs): Added an icons for lipinsky test.
09:04 ChanServ joined #bioclipse
09:10 ChanServ joined #bioclipse
10:20 sneumann joined #bioclipse
12:12 shk3 joined #bioclipse
12:17 shk3 hi olass
12:17 shk3 did you do the rc2?
12:27 olass shk3: no, problems
12:27 olass tomorrow will be RC2
12:27 olass people are gone today :(
12:27 shk3 ok
12:28 shk3 will do some more testing
12:47 shk3 is pele down?
12:47 olass is it?
12:47 olass mom
12:48 olass seems so...
12:48 olass very bad
12:49 olass sent an email to sysadmin
12:50 olass let's hope they have time to look at it today
13:01 shk3 thanks
13:09 olass shk3: do you know of a code snippet to render an image (png/gif) from a structure (IAtomcontainer)?
13:09 olass is there any example online?
13:10 shk3 new renderer?
13:11 olass yes
13:11 shk3 have a look at http://apps.sourceforge.net/mediawiki/​cdk/index.php?title=Renderer_Tutorial
13:12 shk3 more specifically at
13:12 shk3 http://apps.sourceforge.net/mediawiki/cdk/inde​x.php?title=Renderer_Tutorial-Single_Molecules
13:12 shk3 that should do it
13:12 olass thx
13:13 olass shk3: I assume this is AWT code?
13:13 shk3 yes
13:13 shk3 ah, you need swt
13:13 shk3 ?
13:13 olass not really
13:14 olass just need to write out a byte[] with the image
13:14 olass will settle with this for now
13:14 shk3 hm, not sure about the byte[] thing
13:18 shk3 you need to convert the image or so
13:18 shk3 but I never looked at this
13:20 olass yes
13:20 olass think I solve it
13:20 olass we'll see
13:32 shk3 where are jcp settings in bioclipse?
13:35 shk3 olass: do you know?
13:35 olass preferences?
13:36 olass under cdk > jcp
13:37 shk3 ah, under cdk
13:37 shk3 thanks
14:02 egonw joined #bioclipse
14:02 egonw moin
14:04 olass moin egonw
14:04 olass back from thetrip?
14:05 egonw yes
14:05 olass nice?
14:06 olass egonw: would be great if you could come to BMC tomorrow. Arvid and I will also come and we will work for the RC2 and the AZ prototype
14:06 olass well, if you can't then you can't
14:07 * olass has gotten BIRT to atually produce him a report
14:10 egonw yes, will be here tomorrow
14:10 egonw we got phone at home now
14:10 egonw but
14:10 egonw no internet
14:10 egonw because, apparently...
14:10 egonw you need phone first
14:10 egonw and *then* they check afterwards if they can offer you ADSL at that location
14:11 egonw HELLO?!?!
14:11 egonw what???
14:11 egonw can't you just say that before we move our abonnemang ?!?!?
14:12 egonw so, the most optimal option is that we have internet in 7 days from now...
14:12 egonw worst ase scenario, they don't do ADSL at our site
14:14 egonw olass: feel free to pass me a priority list
14:14 egonw weirdly enough
14:14 egonw my Mylyn does not show 'NEW' bug reports....
14:14 olass seems pele is down :(
14:15 egonw ah, ic...
14:15 egonw will check
14:15 egonw Mylyn is crucial
14:15 olass I emailed sysadmins but got no answer yet
14:15 olass yes :(
14:15 egonw OK, will go there now then...
14:15 olass to pele?
14:15 olass or sysadmins?
14:15 egonw sysadmins at least
14:15 olass great
14:16 egonw bbl
14:16 olass ask for Anders or Nisse
14:21 masak joined #bioclipse
14:38 egonw ok, pele should be back up on
14:38 egonw on = now
14:39 zarah joined #bioclipse
14:42 egonw ha, welcome back zarah!
14:57 olass egonw++
14:57 * olass will relocate to Martins apartment now
14:57 olass ttl
15:35 shk3 egonw: we once talked about how the @author etc. tags are updated in cdk.
15:35 shk3 I want to set this up for jcp finally.
15:35 shk3 could you repeat what I need to do?
15:37 egonw it's best to use the copyright/license header
15:37 egonw and when that is done, then the @author tags is optional, but interesting for the JavaDoc...
15:43 shk3 the licence header is there
15:50 egonw that should be enough
16:33 egonw wow...
16:33 egonw yet another bug in the Sun JVM
16:42 CIA-40 bioclipse: egonw * r11261 /bioclipse2/trunk/plugins/net.bioclipse.inchi/src​/net/bioclipse/inchi/business/InChIManager.java: Added the status as reported by the InChI library in the error message
16:54 CIA-40 bioclipse: egonw * r11262 /bioclipse2/trunk/plugins/net.bioclipse.inchi/ (html/ html/main.html plugin.xml toc.xml):
16:54 CIA-40 bioclipse: Added documentation page for the InChI plugin to detail what needs to be done to
16:54 CIA-40 bioclipse: get the plugin working on Ubuntu Jaunty 9.04 (fixes #1234).
16:54 zarah bug #1234 | http://tinyurl.com/lxdt6t
18:06 sneumann_ joined #bioclipse
20:50 sneumann_ zarah: tell shk3 to check http://msbi.ipb-halle.de/updateSite
20:50 zarah sneumann_'s link is also http://tinyurl.com/l8mwsj
20:50 zarah Consider it noted.
22:19 CIA-40 bioclipse: ospjuth * r11263 /bioclipse2/trunk/plugins/net.bioclipse.ds.birt/ (31 files in 10 dirs): (log message trimmed)
22:19 CIA-40 bioclipse: Major rewrite of BIRT for Bioclipse Decision Support. Some features are:
22:19 CIA-40 bioclipse: * New Wrapped Browser Editor for Birt
22:19 CIA-40 bioclipse: * Use of scripted data set
22:19 CIA-40 bioclipse: * Java handlers for 2 tests
22:19 CIA-40 bioclipse: * Icons
22:19 CIA-40 bioclipse: * A simple BIRT report design
22:20 CIA-40 bioclipse: ospjuth * r11264 /bioclipse2/trunk/plugins/net.bioclipse​.ds/src/net/bioclipse/ds/model/report/ (5 files): A new object model for Decision Support Reports in BIRT.
22:20 CIA-40 bioclipse: ospjuth * r11265 /bioclipse2/trunk/plugins/net.bioclipse​.ds/schema/net.bioclipse.ds.test.exsd: Added ReportModel to extension point Tests.
22:21 CIA-40 bioclipse: ospjuth * r11266 /bioclipse2/trunk/plugins/net.bioclipse.ds/src/​net/bioclipse/ds/ui/IDSViewNoCloseEditor.java: An interface for editors that should not blank DSView. Currently only implemented by WrappedBrowserEditor for Birt.
22:22 CIA-40 bioclipse: ospjuth * r11267 /bioclipse2/trunk/plugins/net.bioclipse.ds/ (7 files in 5 dirs): Updates to API and implementation to support Reporting from Decision Support.
22:22 CIA-40 bioclipse: ospjuth * r11268 /bioclipse2/trunk/plugins/net.bioclipse.ds.d​blookup/src/net/bioclipse/ds/dblookup/impl/ (DBExactmodel.java DBNNmodel.java): Implemented ReportModel for DBExact and DBNearest tests.
22:23 CIA-40 bioclipse: ospjuth * r11269 /bioclipse2/trunk/plugins/net​.bioclipse.ds.dblookup.bursi/ (META-INF/MANIFEST.MF plugin.xml): Declare new ReportModels for use in the 2 DB tests.

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