Camelia, the Perl 6 bug

IRC log for #bioclipse, 2009-06-16

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All times shown according to UTC.

Time Nick Message
05:29 olass joined #bioclipse
06:06 masak joined #bioclipse
06:07 CIA-40 bioclipse: ospjuth * r11368 /bioclipse2/trunk/plugins/net.bioclipse.ds​/src/net/bioclipse/ds/model/TestRun.java:
06:07 CIA-40 bioclipse: * Set text "INCONCLUSIVE" for exact matches with no results.
06:07 CIA-40 bioclipse: * Make DSView and PropertyCalculators show same result.
06:33 ilogger2_ joined #bioclipse
06:55 Gpox joined #bioclipse
07:27 CIA-40 bioclipse: ospjuth * r11369 /bioclipse2/trunk/plugins/net.bioclipse.ds/ (9 files in 5 dirs):
07:27 CIA-40 bioclipse: * Added Help pages with Test descriptions and screenshot
07:27 CIA-40 bioclipse: * Added actions to cheat sheet
07:27 CIA-40 bioclipse: * Extended cheat sheet with more steps
07:45 egonw joined #bioclipse
07:46 jonalv joined #bioclipse
07:51 egonw moin
07:51 zarah oh hai egonw
07:51 * egonw is at BMC
07:52 jonalv o/
07:59 masak egonw: does that mean you'll be participating in our hedonistic sushi orgies at lunch?
07:59 egonw no
07:59 egonw will leave around 13:00 already
07:59 masak ok. :) your loss.
07:59 egonw yes, not mine
08:06 CIA-40 bioclipse: jonalv * r11370 /bioclipse2/trunk/plugins/net.bioclips​e.cdk.business/src/net/bioclipse/cdk/d​omain/CDKMoleculePropertySource.java: use cdkmolecule clones for calculating inchi and smiles. Fixes bug: #1310
08:06 zarah bug #1310 | http://tinyurl.com/lgeea7
08:13 jonalv (++)++
08:19 egonw searching a 500GB file with Java NIO:
08:19 egonw http://stackoverflow.com/questions/736556/binar​y-search-in-a-sorted-memory-mapped-file-in-java
08:19 zarah egonw's link is also http://tinyurl.com/nk3nyc
08:27 egonw masak: ping
08:27 masak egonw: pong.
08:27 egonw masak: jonalv requests 'man doi'
08:27 egonw is there already something like 'man man' ?
08:27 masak jonalv: (<jonalv> (++)++)++
08:27 masak egonw: yes.
08:28 egonw @karma (<jonalv> (++)++)
08:28 zarah (<jonalv> (++)++) has a karma of 0
08:28 jonalv karma (<jonalv> (++)++
08:28 zarah (<jonalv> (++)++ has a karma of 0
08:28 egonw @karma <jonalv> (++)++)
08:28 zarah <jonalv> (++)++) has a karma of 0
08:28 egonw @karma <jonalv> (++)++
08:28 zarah <jonalv> (++)++ has a karma of 0
08:28 masak @karma ++
08:28 zarah ++ has a karma of 4
08:29 masak egonw: as far as I know, there's already a 'man doi' too.
08:29 egonw apparently not
08:30 jonalv egonw: yes the bug report was regarding the content of the resposne to that command
08:30 jonalv it is not complete
08:30 masak glad we cleared that up.
08:30 egonw mmm... ok
08:30 egonw did not know we had 'man doi' already
08:30 egonw what does it say now?
08:31 jonalv egonw: I pasted the asnwer in the bug report
08:31 masak egonw: " The doi command opens a web browser if the method for "
08:31 masak + "which the 'doi' command is called has an associated DOI. "
08:31 masak + "A DOI - digital object identifier identifies digital "
08:31 masak + "content, such as a for example a journal article"
08:44 egonw ok, so what is the bug about then?
08:44 egonw that text is not good?
08:44 egonw oh wait...
08:44 egonw two persons replied
08:57 CIA-40 bioclipse: goglepox * r11371 /bioclipse2/trunk/plugins/net​.bioclipse.cdk.ui.sdfeditor/ (4 files in 3 dirs):
08:57 CIA-40 bioclipse: Added 'Extract Molecules' to moltable menu
08:57 CIA-40 bioclipse: Fixes bug #713
08:58 zarah bug #713 | http://tinyurl.com/ktjjyq
09:15 masak lunch &
09:17 * jonalv gonna eat sushi++
09:41 shk3 joined #bioclipse
10:09 shk3 joined #bioclipse
10:11 shk3 jonalv: what are bc2 release plans right now?
10:11 shk3 the wiki still says June 11th
10:11 shk3 for 2.0
10:11 egonw we're in feature freeze here
10:12 egonw the plan was to RCs
10:12 egonw but I heard ola mention RC3...
10:12 egonw he's away now, and he's the release dude
10:13 shk3 no problem
10:13 shk3 I won't be at ebi till tuesday
10:13 shk3 but will be online from time to time
10:13 shk3 so if you have some task for me, just file bug reports
10:24 egonw ok
10:47 CIA-40 bioclipse: jonalv * r11372 /bioclipse2/trunk/plugins/net.bioc​lipse.core.tests/src/net/bioclipse​/managers/tests/TestManager.java: added missing call to done() method in TestManager.createBioObject(IFile file, IProgressMonitor monitor)
11:19 CIA-40 bioclipse: carl_masak * r11373 /bioclipse2/trunk/plugins/net.bioclipse.sc​ripting.ui/cheatsheets/usingJSConsole.xml:
11:19 CIA-40 bioclipse: [usingJSConsole.xml] fixed wording and grammar
11:19 CIA-40 bioclipse: Especially removed the offending "how is it used" clause, which promises
11:19 CIA-40 bioclipse: too much about manager documentation. Fixes #1295.
11:20 zarah bug #1295 | http://tinyurl.com/n9rey8
11:47 berry_ joined #bioclipse
13:19 CIA-40 bioclipse: carl_masak * r11374 /bioclipse2/trunk/plugins/net.bioclip​se.scripting.ui/src/net/bioclipse/scr​ipting/ui/views/JsConsoleView.java:
13:19 CIA-40 bioclipse: [JsConsoleView] 'help' now also lists special cmds
13:19 CIA-40 bioclipse: Previously, it listed how to use 'help', plus all available managers. Just
13:19 CIA-40 bioclipse: as the latter, the special commands are sorted alphabetically.
13:21 jonalv joined #bioclipse
13:37 CIA-40 bioclipse: jonalv * r11375 /bioclipse2/trunk/plugins/net.bioclipse.co​re.tests/src/net/bioclipse/managers/tests/ (AbstractManagerMethodDispatcherTest.java TestManager.java): layout
13:38 CIA-40 bioclipse: jonalv * r11376 /bioclipse2/trunk/plugins/ (5 files in 3 dirs): Made it possible to use BioclipseJobUpdate hooks on the interface without having to use an IReturner when implementing the manager method. Fixes bug #1213
13:38 zarah bug #1213 | http://tinyurl.com/lycvu3
14:54 jonalv @ask egonw what is the difference between the targets "2.0" and "2.0 release" and "2.1" and "2.1 release" on pelezilla?
14:54 zarah Consider it noted.
14:54 jonalv @ask olass what is the difference between the targets "2.0" and "2.0 release" and "2.1" and "2.1 release" on pelezilla?
14:54 zarah Consider it noted.
15:57 CIA-40 bioclipse: jonalv * r11377 /bioclipse2/trunk/plugins/net.bioclipse.co​re.tests/src/net/bioclipse/managers/tests/ (3 files): Wrote tests for bug: #1228
15:57 zarah bug #1228 | http://tinyurl.com/mmezoe
16:46 ilogger2 joined #bioclipse
23:43 CIA-53 joined #bioclipse

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