Camelia, the Perl 6 bug

IRC log for #bioclipse, 2009-06-22

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All times shown according to UTC.

Time Nick Message
05:21 sneumann__ joined #bioclipse
07:13 Gpox joined #bioclipse
07:20 olass joined #bioclipse
07:23 mgerlich joined #bioclipse
07:23 olass moin
07:23 zarah privet olass
07:26 CIA-53 bioclipse: ospjuth * r11422 /bioclipse2/trunk/plugins/net.bioclipse.jmol/s​rc/net/bioclipse/jmol/editors/JmolEditor.java: Disabled Save As for JmolEditor. Solves 1072.
07:30 CIA-53 bioclipse: goglepox * r11423 /bioclipse2/trunk/plugins/net.bioclipse.cdk.u​i.sdfeditor/src/net/bioclipse/cdk/ui/sdfedito​r/editor/MultiPageMoleculesEditorPart.java:
07:30 CIA-53 bioclipse: Changed tab names for MoleculesEditor
07:30 CIA-53 bioclipse: Fixes bug #1330
07:30 zarah bug #1330 | http://tinyurl.com/nhf6n6
07:48 CIA-53 bioclipse: goglepox * r11424 /bioclipse2/trunk/plugins/net.bioclipse.cd​k.jchempaint/src/net/bioclipse/cdk/jchempa​int/widgets/JChemPaintEditorWidget.java:
07:48 CIA-53 bioclipse: 'Generated' is now removed when saved
07:48 CIA-53 bioclipse: Solves bug #1335
07:48 zarah bug #1335 | http://tinyurl.com/n6qxel
07:58 egonw joined #bioclipse
07:59 egonw OK, premature
07:59 egonw will reboot
07:59 egonw brb
08:02 egonw joined #bioclipse
08:03 masak joined #bioclipse
08:12 ChanServ joined #bioclipse
08:12 egonw moin
08:12 zarah saluton egonw
08:13 masak saluton!
08:18 olass hej
08:18 olass zarah: hej
08:18 zarah olass: are you making fun of me?
08:18 olass zarah: would I?
08:18 zarah olass: you've just exceeded my capabilities :/
08:18 olass right...
08:19 masak olass: yes, you would. good morning. :)
08:19 olass good morning masak
08:20 egonw olass, Gpox: we need to talk
08:22 olass sounds serious
08:22 olass egonw: is tomorrow too late?
08:22 egonw yes
08:22 olass skype?
08:22 olass or irc?
08:22 egonw Gpox: skype works for you?
08:23 CIA-53 bioclipse: egonw * r11425 /bioclipse2/trunk/plugins/net.bioclips​e.cdk.business/src/net/bioclipse/cdk/d​omain/ChemObjectPropertySource.java: Use three digits in coordinate display
08:24 CIA-53 bioclipse: egonw * r11426 /bioclipse2/trunk/plugins/ne​t.bioclipse.cdk.jchempaint/ (2 files in 2 dirs): Fixed Outline to give names for all known elements, by just using the CDK functionality
08:28 Gpox yes
08:28 egonw OK, my (new) skype account: chem-bla-ics
08:35 CIA-53 bioclipse: ospjuth * r11427 /bioclipse2/trunk/plugins/net.bioclipse.jmol/s​rc/net/bioclipse/jmol/editors/JmolEditor.java:
08:35 CIA-53 bioclipse: Close JmolEditor if underlying resource is deleted or if the project of the file
08:35 CIA-53 bioclipse: is closed (asks for confirmation if dirty). Wiki page updated about the issue
08:35 CIA-53 bioclipse: at:
08:35 CIA-53 bioclipse: http://wiki.bioclipse.net/index.php?title=How_to_w​rite_a_Multi_Page_Editor#React_on_resource_changes
08:35 CIA-53 bioclipse: Solves bug 1328.
08:35 zarah CIA-53's link is also http://tinyurl.com/masnu9
08:35 zarah bug #1328 | http://tinyurl.com/m2xv3w
08:38 olass egonw: please make the skype call when you are ready
08:42 egonw @pz 1265
08:42 zarah http://pele.farmbio.uu.se/cgi-bi​n/bugzilla/show_bug.cgi?id=1265
08:43 CIA-53 bioclipse: ospjuth * r11428 /bioclipse2/trunk/plugins/net.bioclipse.ui.busine​ss/src/net/bioclipse/ui/business/UIManager.java: Remove littering of JSConsole upon opening on editor from ui.open(). Solves 1219.
08:54 olass egonw: the bug for a unit test was for (on load/change) hydrogen detetction, aromaticity, or both?
08:58 CIA-53 bioclipse: goglepox * r11429 /bioclipse2/trunk/plugins/net.bioclipse.cd​k.jchempaint/src/net/bioclipse/cdk/jchempa​int/widgets/JChemPaintEditorWidget.java:
08:58 CIA-53 bioclipse: Changed selection color to light blue on all platforms for JCP
08:58 CIA-53 bioclipse: Solves bug #1100
08:58 zarah bug #1100 | http://tinyurl.com/lmf7qv
08:58 egonw [10:42:15] <egonw> @pz 1265
08:58 egonw [10:42:18] <zarah> http://pele.farmbio.uu.se/cgi-bi​n/bugzilla/show_bug.cgi?id=1265
08:58 egonw [10:42:15] <egonw> @pz 1265
08:58 egonw [10:42:18] <zarah> http://pele.farmbio.uu.se/cgi-bi​n/bugzilla/show_bug.cgi?id=1265
08:58 zarah egonw's link is also http://tinyurl.com/njmfnk
08:58 zarah egonw's link is also http://tinyurl.com/njmfnk
08:59 egonw olass: we still need to talk about 2GB+ for pele and BIOS update to autoreboot upon powerloss
09:00 CIA-53 bioclipse: goglepox * r11430 /bioclipse2/trunk/ (2 files in 2 dirs):
09:00 CIA-53 bioclipse: Changed Controller hub to not send structure changed event when a new model is set.
09:00 CIA-53 bioclipse: Not synced with jchempaint-primary, I am not entierly sure
09:00 CIA-53 bioclipse: this is the right thing to do.
09:01 egonw Gpox: can you explain that last commit?
09:01 egonw if you set a new model, should that not trigger a change event?
09:04 Gpox That is true but it depends on what the application thinks it is listening to
09:05 Gpox In this case i should have to check when i get the strucureChanged event if it was the model that was changed and handle that there
09:06 Gpox one side effect was that the editor got dirty every time you load a new molecule
09:10 olass egonw: argh, had forgotten about the pele 2GB+
09:10 olass file me a bug!
09:10 olass [10:57] < olass> egonw: the bug for a unit test was for (on load/change) hydrogen detetction, aromaticity, or both?
09:11 egonw [10:58:36] <egonw> [10:42:15] <egonw> @pz 1265
09:11 egonw [10:58:36] <egonw> [10:42:18] <zarah> http://pele.farmbio.uu.se/cgi-bi​n/bugzilla/show_bug.cgi?id=1265
09:11 zarah egonw's link is also http://tinyurl.com/njmfnk
09:13 berry_ joined #bioclipse
09:16 olass egonw: so that answer was for me? Sorry, I did not understand that. It looked like you were looking up a bug in the pelezilla. How stupid of me.
09:24 egonw :)
09:24 egonw sorry, too busy to make full sentences, including addresses
09:26 olass egonw: a simple 'olass' would be informative that it was intended for me
09:26 olass no full sentence required
09:26 olass where is shk3?
09:27 egonw course in sheffield
09:36 olass egonw: Ok, then I'll do the cheminfo cheat sheet
09:36 olass it is in terrible state
09:36 olass *sigh*
09:36 olass egonw: What is the status with the pubchem plugin?
09:37 olass was that postponed to 2.0?
09:37 olass was that postponed to 2.1?
09:37 olass sry
09:37 egonw no
09:37 egonw not that I am aware of
09:37 olass it is in 2.0?
09:37 egonw in the web feature ?
09:37 olass is there a web feature!?
09:37 olass has that been in any beta?
09:38 * olass seriously doubts that
09:40 olass egonw: it is not listed on http://wiki.bioclipse.net/index.php?title​=List_of_stable_managers_in_bioclipse_2.0
09:40 zarah olass's link is also http://tinyurl.com/68dyxn
09:40 olass which, btw requires some updates by us all...
09:41 olass also, you did not mention that when I asked what should be on update site
09:41 olass egonw: I don't think anyone has ever tested the pubchem functionality in a Bioclipse binary
09:41 olass but I could be wrong...
09:42 egonw oh brilliant
09:42 olass egonw: I thought that was postponed to 2.1
09:45 olass why is the pubchem plugin in the web feature and not in the cheminfo feature?
09:45 egonw because it is web functionality?
09:45 olass ???
09:46 masak ¿¿¿
09:46 egonw olass: want me to move it to the cheminfo feature ?
09:46 olass masak: what do you mean?
09:47 masak olass: nothing -- I just thought we were writing triplets of funny symbols.
09:48 olass egonw: is it stable?
09:48 olass I mean, adding a new plugin to RC3 is not a good thing...
09:48 masak we need to work on the concept of 'feature freeze'...
09:48 olass indeed
09:49 olass egonw: I suggest the experimental update site
09:49 olass since things are as they are
09:49 egonw it's more stable than that
09:49 egonw regular update site
09:49 olass egonw: so we skip feature freeze?
09:50 egonw I never knew pubchem was not part of the features already
09:50 egonw as far as I knew, it is in the feature freeze already
09:50 egonw and no need to 'add' it
09:50 olass obviously no one has tested it
09:50 olass ever
09:50 olass in binary form
09:50 olass not even you
09:51 egonw no, not in binary form
09:51 egonw guilty as charged
09:51 olass This will add another RC to the pipe
09:51 masak egonw: jonalv has now gone to hunt food. it'll be lunch soon.
09:51 egonw olass: then put it on the experimental update site
09:52 olass but I can live with that if pubchem is stable
09:52 * olass really wants the functionality in biolipse
09:52 olass in 2.0
09:52 egonw OK, so let's just test it in the export
09:52 egonw and if it works
09:52 egonw no need RC is needed
09:52 olass right
09:52 * masak ascends to the floor above in order to heat his frozen food
09:53 CIA-54 joined #bioclipse
09:55 olass egonw: is pubchem NWO?
09:56 * olass does not see any unit tests for it
09:57 egonw likely not :(
09:57 egonw should not be hard
09:57 CIA-54 bioclipse: ospjuth * r11431 /bioclipse2/trunk/plugins/net.biocl​ipse.pubchem/META-INF/MANIFEST.MF: Set version to RC3 for pubchem plugin.
09:57 egonw would be good, though
09:57 egonw olass: file me bug reports
09:57 olass will do
09:58 CIA-54 bioclipse: ospjuth * r11432 /bioclipse2/trunk/features/net.bioclips​e.chemoinformatics_feature/feature.xml: Added pubchem plugin to cheminformatics feature.
10:07 Gpox joined #bioclipse
10:36 olass egonw: ping
10:40 olass Suggestion: The category in NewWizards should be labeled "Cheminformatics" instead of "Chemistry". Is this OK with you? If so, I'd like to do this now (just want your blessing).
10:41 olass egonw: let me know
10:41 egonw olass: yes fine
10:41 olass ok
10:44 CIA-54 bioclipse: ospjuth * r11433 /bioclipse2/trunk/plugins/ (3 files in 3 dirs): Renamed NewWizard category Chemistry > Cheminformatics and moved this NewWizardCategory to net.bioclipse.cheminformatics plugin.
10:45 CIA-54 bioclipse: ospjuth * r11434 /bioclipse2/trunk/plugins/net.bioclipse.pubchem/ (META-INF/MANIFEST.MF plugin.xml): Added dep to cheminfo plugin and put NewWizard in cheminfo category.
10:51 CIA-54 bioclipse: ospjuth * r11435 /bioclipse2/trunk/plugins/net.bioclipse.pubchem/ (build.properties icons/ icons/world_dl.png plugin.xml): Added an icon for Pubchem Wizard and used the cheminformatics category.
10:52 CIA-54 bioclipse: ospjuth * r11436 /bioclipse2/trunk/plugins/net.bi​oclipse.webservices/plugin.xml: Renamed and moved WSDbFetch NewWizard to cheminformatics.
10:55 CIA-54 bioclipse: ospjuth * r11437 /bioclipse2/trunk/plugins/net​.bioclipse.cdk.ui/plugin.xml: Removed old Chemistry category for NewWizards.
10:56 CIA-54 bioclipse: ospjuth * r11438 /bioclipse2/trunk/plugins/net.biocli​pse.chemoinformatics/cheatsheets/Gen​eralChemoinformaticsCheatSheet.xml:
10:56 CIA-54 bioclipse: Major updates to the Cheminformatics Cheat sheet.
10:56 CIA-54 bioclipse: * Removed references and steps for XMPP, QSAR, and Speclipse since they should provide their own cheat sheets
10:56 CIA-54 bioclipse: * Added an action for 'Compare molecules'
10:56 CIA-54 bioclipse: * Removed all 'See ? for details'
10:56 CIA-54 bioclipse: * Removed all features that are only available as scripting command, moved to scripting cheat sheet
10:56 CIA-54 bioclipse: Solves 1297, 1064, and 349.
11:17 CIA-54 bioclipse: ospjuth * r11439 /bioclipse2/trunk/plugins/net.bioclipse.qsar.ui/ (5 files in 3 dirs): Moved QSAR script cheatsheet from cdkws plugin to qsar plugin.
11:18 CIA-54 bioclipse: egonw * r11440 /bioclipse2/trunk/plugins/net.bioclipse.cd​k.jchempaint/src/net/bioclipse/cdk/jchempa​int/outline/StructureContentProvider.java:
11:18 CIA-54 bioclipse: Fixed bond information in Outline.
11:18 CIA-54 bioclipse: * take into account quadruple bonds (instead of marking those as single)
11:18 CIA-54 bioclipse: * show aromaticity as flag, not as bond order
11:22 CIA-54 bioclipse: ospjuth * r11441 /bioclipse2/trunk/bioclipse-updatesite/site.xml: Removed tutorials section and cdkws09 plugin from update site since refactored into other plugins.
11:23 CIA-54 bioclipse: ospjuth * r11442 /bioclipse2/trunk/plugins/net.bioclipse.cdk.ui/ (8 files in 2 dirs): Moved "scripting CDK" composite cheat sheet to cdk.ui plugin, deprecating the cdkws09 plugin.
11:44 CIA-54 bioclipse: goglepox * r11443 /bioclipse2/trunk/plugins/net.bioclipse​.cdk.jchempaint/src/net/bioclipse/cdk/j​chempaint/editor/JChemPaintEditor.java:
11:44 CIA-54 bioclipse: Implemented IResourceChangeListener and closes editor on delete
11:44 CIA-54 bioclipse: Solves bug #1329
11:44 zarah bug #1329 | http://tinyurl.com/kl32ue
11:46 CIA-54 bioclipse: ospjuth * r11444 /bioclipse2/trunk/plugins/net.biocli​pse.chemoinformatics/cheatsheets/Gen​eralChemoinformaticsCheatSheet.xml: Fixed bugs in cheat sheet when script commands were not terminated by parenthesis.
11:47 olass egonw: ping
11:48 olass egonw: how about showing the 2D view by default in the Cheminformatics perspective? Suggested place: below the outline in teh lower right corner. Let me know if I should implement.
11:48 egonw pong
11:48 egonw yes, sounds fine
11:48 * olass is on it
11:48 egonw olass:
11:48 olass yes?
11:48 egonw while at it...
11:49 egonw please also add the Periodic Table as hsortcut to the perspective
11:49 egonw and please check the Jmol view I added...
11:49 egonw because I think I added the Jmol Console and not the Jmol View to the perspective
11:50 olass does periodic table really need its own plugin?
11:50 * olass thinks cdk.ui
11:50 egonw ask Gpox
11:50 olass Gpox: what do you think?
11:51 olass Gpox: let me know if I can move it to cdk.ui
11:53 Gpox It is ok it depends on cdk.buisniess anyway
11:55 * egonw needs to make an emergency Jmol release
11:57 olass egonw, Gpox
11:57 egonw pong
11:57 olass egonw, Gpox FYI: The move of PeriodicTable required adition of cdk.extra as dep to cdk.ui.
11:58 olass guess that means nothing since already in feature
11:58 olass nvm
11:59 CIA-54 bioclipse: ospjuth * r11445 /bioclipse2/trunk/features/net.bioclips​e.chemoinformatics_feature/feature.xml: Removed periodic table plugin from cheminfor feature since depreacated (refactored into cdk.ui). Also removed jmol.cdk plugin since not in release.
12:00 CIA-54 bioclipse: ospjuth * r11446 /bioclipse2/trunk/plugins/net.bioclipse.cdk.ui/ (4 files in 4 dirs): Moved periodic table view to cdk.ui plugin.
12:01 egonw yeah, InChI for toluene :)
12:01 egonw oh, wait...
12:01 egonw no, that's not toluene anymore
12:01 olass :(
12:02 egonw but that is :)
12:03 egonw OK, I think InChI is working again in the props view
12:10 egonw olass: please add the two InChIs...
12:10 olass ad icnhi?
12:10 egonw is it not merely InChI version?
12:10 olass no idea
12:10 egonw your bug report
12:10 egonw @pz 1350
12:10 egonw is it not merely InChI version?
12:10 zarah http://pele.farmbio.uu.se/cgi-bi​n/bugzilla/show_bug.cgi?id=1350
12:10 olass could you reproduce?
12:10 egonw 1/ versus 1S/ ?
12:11 olass yes
12:11 olass 1/ vs 1S
12:11 egonw no worries about that
12:11 olass what is that difference?
12:11 egonw Standard InChI versus InChI
12:11 olass it will break a database lookup
12:11 egonw Sam's lib does not do Standard InChI yet
12:11 olass why not?
12:12 egonw because he did not update for the latest release yet
12:12 olass and what is teh difference between standard an non-standard inchi?
12:12 egonw no clue
12:12 egonw not too much generally
12:12 * olass thought inchi was supposed to be 1 standard, not many
12:12 egonw but not sure about the fine prints
12:12 egonw yes, so did many
12:12 olass inchi seems to be very badly managed
12:13 egonw well, the have a scientific advisory board now
12:13 egonw they are learning
12:13 egonw anyway...
12:13 egonw I have been thinking this weekend already about recompiling his jni-inchi against the latest InChI distrib
12:13 egonw I can compile it now, and give it a try now
12:14 egonw but need to figure out the unit testing first
12:14 egonw and have two fails in his code
12:14 egonw btw, I think I might have accidentally added a feature to the bioclipse.product
12:14 egonw the cdk.feature is not supposed to be there...
12:14 egonw please verify...
12:24 egonw Gpox: now would be a good time, where I should hook in recalculating of implicit hydrogens
12:26 CIA-54 bioclipse: egonw * r11447 /bioclipse2/trunk/plugins/net.bioclipse.inchi/ (2 files in 2 dirs): Fixed InChI generation: don't pass aromaticity flags to the C code (fixes #1257).
12:26 zarah bug #1257 | http://tinyurl.com/md3zse
12:26 Gpox I guess in JChemPaintEditorWidget.structureChanged() and structurePropertiesChanged()
12:28 CIA-54 bioclipse: ospjuth * r11448 /bioclipse2/trunk/plugins/net.biocli​pse.cdk.jchempaint.view/plugin.xml: Added 2D-view to cheminfo perspective.
12:28 CIA-54 bioclipse: ospjuth * r11449 /bioclipse2/trunk/plugins/net​.bioclipse.cdk.ui/plugin.xml: Added ShowViewShortcut fro periodic table to cheminfo perspective.
12:29 CIA-54 bioclipse: ospjuth * r11450 /bioclipse2/trunk/plugins/net.biocl​ipse.cdk.smartsmatching/plugin.xml: Added ShowViewShortcut for SmartsMatchingView to cheminfo perspective.
12:32 CIA-54 bioclipse: ospjuth * r11451 /bioclipse2/trunk/plugins/n​et.bioclipse.ui/plugin.xml: Added NewWizardCategory 'Download'.
12:33 CIA-54 bioclipse: ospjuth * r11452 /bioclipse2/trunk/plugins/net.bi​oclipse.webservices/plugin.xml: Moved WSDBFetch NewWizard to DownloadCategory
12:34 CIA-54 bioclipse: ospjuth * r11453 /bioclipse2/trunk/plugins/net.​bioclipse.pubchem/plugin.xml: Moved Pubchem NewWizard to DownloadCategory
12:35 egonw svn---
12:36 egonw for unnecessarily boosting ospjuth commit statistics
12:36 egonw svn--
12:36 olass egonw: why so?
12:36 CIA-54 bioclipse: ospjuth * r11454 /bioclipse2/trunk/plugins/ (2 files in 2 dirs): Added shortcuts for NewWizards pubchem and webservices to cheminfo perspective.
12:37 olass egonw: I am productive
12:37 egonw :)
12:37 olass if you want to take over these bugs, just let me know
12:37 olass :)
12:39 egonw [14:24:00] <egonw> Gpox: now would be a good time, where I should hook in recalculating of implicit hydrogens
12:45 Gpox 14:26:27 < Gpox> I guess in JChemPaintEditorWidget.structureChanged() and structurePropertiesChanged()
12:48 egonw hahaha
12:48 egonw sorry about that
12:48 egonw missed it in the flood for minor commits by ola
12:53 egonw olass: can you please reconsider #1196 ?
12:54 olass @pz 1196
12:54 zarah http://pele.farmbio.uu.se/cgi-bi​n/bugzilla/show_bug.cgi?id=1196
12:55 olass egonw: ok. Will move to 2.1
12:55 olass egonw: done
12:55 egonw right now it only gives warnings every two minutes
12:55 egonw but it still does
12:55 olass I can live with that
13:09 egonw org.eclipse.ui.PartInitException: Could not create view: net.bioclipse.cdk.ui.periodictable.view1
13:10 olass egonw: please update
13:10 egonw just did that
13:10 olass then reset workspace
13:13 olass_ joined #bioclipse
13:13 olass_ hrm
13:17 CIA-54 bioclipse: egonw * r11455 /bioclipse2/trunk/plugins/net.bioclipse.pubchem/ (10 files in 5 dirs):
13:17 CIA-54 bioclipse: Converted PubChem manager into NWO (fixes #1345).
13:17 CIA-54 bioclipse: * added IJava and IJavaScript interfaces
13:17 CIA-54 bioclipse: * added interface methods with hooks/etc so that things get run as jobs
13:17 zarah bug #1345 | http://tinyurl.com/ls5jkt
13:34 sneumann__ joined #bioclipse
14:02 sneumann__ joined #bioclipse
14:02 CIA-54 bioclipse: goglepox * r11456 /bioclipse2/trunk/plugins/net.bioclipse.cd​k.jchempaint/src/net/bioclipse/cdk/jchempa​int/handlers/ToggleImplicitHydrogens.java:
14:02 CIA-54 bioclipse: Updated show implicit hydrogens handler
14:02 CIA-54 bioclipse: The button state appears correct
14:05 CIA-54 bioclipse: goglepox * r11457 /bioclipse2/trunk/plugins/net​.bioclipse.cdk.ui.sdfeditor/ (5 files in 3 dirs):
14:05 CIA-54 bioclipse: Update dirty status when property is removed
14:05 CIA-54 bioclipse: Also changed menu alternativ to Remove Property
14:05 CIA-54 bioclipse: Solves bug #1206
14:05 zarah bug #1206 | http://tinyurl.com/llw6vr
14:11 CIA-54 bioclipse: egonw * r11458 /bioclipse2/trunk/plugins/net.biocli​pse.pubchem/src/net/bioclipse/pubche​m/wizards/NewFromPubChemWizard.java:
14:11 CIA-54 bioclipse: Searching and downloading from PubChem is now run as Job (fixes #1348).
14:11 CIA-54 bioclipse: * set ups a local jobs
14:11 CIA-54 bioclipse: * uses the jobs monitor for the pubchem.search() and pubchem.loadMolecule()
14:11 CIA-54 bioclipse: * uses PubChem directly, as I could not get it working via IJavaPubChemManager
14:12 zarah bug #1348 | http://tinyurl.com/lyrf7j
14:22 CIA-54 bioclipse: egonw * r11459 /bioclipse2/trunk/plugins/net.bioclips​e.pubchem/src/net/bioclipse/pubchem/wi​zards/NewFromPubChemWizardPage.java: Use a GridLayout instead of manual placing of entries (fixes part of #1349)
14:25 CIA-54 bioclipse: goglepox * r11460 /bioclipse2/trunk/plugins/ne​t.bioclipse.cdk.jchempaint/ (3 files in 2 dirs):
14:25 CIA-54 bioclipse: Added method for removing explicit hydrogens
14:25 CIA-54 bioclipse: see bug #1315
14:25 zarah bug #1315 | http://tinyurl.com/nhuohb
14:39 CIA-54 bioclipse: goglepox * r11461 /bioclipse2/trunk/plugins/net.bioclips​e.cdk.business/src/net/bioclipse/cdk/d​omain/CDKMoleculePropertySource.java:
14:39 CIA-54 bioclipse: Only refresh if a property page was found
14:39 CIA-54 bioclipse: Solves bug #1331
14:39 zarah bug #1331 | http://tinyurl.com/lg5d2y
14:40 egonw Gpox: how do I create a folder in /Virtual ?
14:40 Gpox I presume you mean programaticly?
14:41 egonw yes
14:41 Gpox IProject project = net.bioclipse.core.Activator.getVirtualProject(); // Then do it the eclipse way
14:41 egonw ah, excellent!
14:41 egonw tack
16:19 olass joined #bioclipse
16:19 olass hi
16:19 zarah oh hai olass
16:19 * olass thought his computer had broken down
16:19 olass glad to be back again!
17:16 CIA-54 bioclipse: goglepox * r11462 /bioclipse2/trunk/plugins/ (2 files in 2 dirs):
17:16 CIA-54 bioclipse: Close MoleculesEditor if resource is deleted
17:16 CIA-54 bioclipse: Fixes bug #1227
17:16 zarah bug #1227 | http://tinyurl.com/np8uv5
17:28 CIA-54 bioclipse: egonw * r11463 /bioclipse2/trunk/plugins/net.bioclipse.cd​k.jchempaint/src/net/bioclipse/cdk/jchempa​int/widgets/JChemPaintEditorWidget.java: Update implicit hydrogen count and atom types upon each structural changes
17:28 CIA-54 bioclipse: egonw * r11464 /bioclipse2/trunk/plugins/net.bioclipse.cdk.busine​ss/src/net/bioclipse/cdk/business/CDKManager.java: Recalculate implicit hydrogen counts upon loading MDL V2000 molfiles (fixes #1265)
17:28 zarah bug #1265 | http://tinyurl.com/njmfnk
17:35 egonw joined #bioclipse
17:49 egonw joined #bioclipse
17:49 egonw ha, my good old konversation :)
17:54 egonw bbl

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