Camelia, the Perl 6 bug

IRC log for #bioclipse, 2009-07-06

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All times shown according to UTC.

Time Nick Message
07:54 egonw joined #bioclipse
07:55 egonw moin
07:55 zarah ni hao egonw
08:13 olass joined #bioclipse
08:28 shk3 joined #bioclipse
08:47 edrin joined #bioclipse
08:47 edrin hi
08:47 zarah hi edrin
08:57 egonw edrin: did you get my email?
08:57 egonw can you please color the changed text in the manuscript red, orange, or so...
08:58 egonw so that it is clear how it is changed
08:58 egonw and make a start with a reply letter, describing how you addressed the reviewer comments?
08:59 egonw the more explicit the better
08:59 egonw (and also for me :)
09:21 edrin egonw: yes
09:37 egonw rojasm: ping
09:37 egonw rojasm: didn't you do an OpenBabel plugin for Bioclipse ?
10:23 sneumann joined #bioclipse
10:28 rojasm hi egonw
10:28 rojasm no that I can remember
10:50 egonw oh, ok
11:22 olass @seen jonalv
11:22 zarah I have not seen jonalv
11:23 olass @seen jonalv
11:23 zarah I have not seen jonalv
11:23 olass @seen masak
11:23 zarah masak was last seen 2 d 19 h 23 m 15 s ago in #bioclipse saying 'ni hao edrin'
11:32 egonw olass: OK, OB-team replied...
11:32 olass yes?
11:32 egonw you need bleeding edge openbabel (read: SVN) for inchi 1.02 beta support
11:34 egonw so, OB is clearly not a solution either
11:42 CIA-54 bioclipse: egonw * r11609 /bioclipse2/trunk/plugins/net.bioclipse.cdk.debug/ (2 files in 2 dirs): Made setting up a list of Sybyl MOL2 atom types static (fixes #1408)
11:42 zarah bug #1408 | http://tinyurl.com/oo3akd
11:58 masak joined #bioclipse
12:26 CIA-54 bioclipse: egonw * r11610 /bioclipse2/trunk/plugins/net.bioclipse.cdk.busine​ss/src/net/bioclipse/cdk/business/CDKManager.java: Added saving of atom types (fixes #1393)
12:26 zarah bug #1393 | http://tinyurl.com/pgz4uy
13:13 CIA-54 bioclipse: ospjuth * r11611 /bioclipse2/trunk/plugins/net.bioc​lipse.cdk.ui.sdfeditor/plugin.xml: Added property calculator menus for sdf0d, in addition to sdf2d and sdf3d.
13:14 CIA-54 bioclipse: ospjuth * r11612 /bioclipse2/trunk/plugins/ (6 files in 2 dirs): Refactoring of tests and implemented SDFExactMatchFP that uses a fingerprint since InChI does not work on all machines.
13:14 edrin olass, egonw: check you mail :)
13:23 egonw @gg eclemma
13:23 zarah egonw: http://www.eclemma.org/
13:52 sneumann joined #bioclipse
13:58 edrin1 joined #bioclipse
14:02 edrin1 egonw: did the review reply outline help you commenting on the manuscript?
14:07 egonw edrin: somewhat
14:08 egonw see my edits to RevReply
14:14 CIA-54 bioclipse: ospjuth * r11613 /bioclipse2/trunk/plugins/net.bioclipse.ds/ (6 files in 4 dirs):
14:14 CIA-54 bioclipse: * Added property calculator menus to be available in Navigator
14:14 CIA-54 bioclipse: * Implemented correct serialization/deserialization of tests to SDF
14:14 CIA-54 bioclipse: * Added bogus Consensus Test to allow for storing this test to file
14:20 CIA-54 bioclipse: egonw * r11614 /bioclipse2/trunk/cdk-externals/trunk​/org.openscience.cdk.io/src/org/opens​cience/cdk/io/cml/CMLCoreModule.java: Removed (too) early erasure of atom/bond data after storing data (see CDK bug #2817469)
14:20 zarah bug #2817469 | http://tinyurl.com/mawweg
14:20 zarah bug #2817469 | http://tinyurl.com/lts4cx
14:20 CIA-54 bioclipse: egonw * r11615 /bioclipse2/trunk/plugins/net.bioclipse.cd​k.business/src/net/bioclipse/cdk/business/ (CDKManager.java CDKManagerHelper.java): Finished roundtripping of JCP atom types in Bioclipse via CML
14:21 egonw @pz sparql
14:21 zarah [1107] Use SPARQL to set up descripto... http://tinyurl.com/n55t8e
14:21 zarah Entire list at http://tinyurl.com/m6zkws
15:11 CIA-54 bioclipse: ospjuth * r11616 /bioclipse2/trunk/plugins/net.bioclipse.ds.birt/ (4 files in 3 dirs): Initialize BIRT WebViewer on plugin startup.
17:38 shk3 joined #bioclipse
17:39 egonw joined #bioclipse
17:40 egonw moin
17:40 zarah saluton egonw
18:26 edrin1 left #bioclipse

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