Camelia, the Perl 6 bug

IRC log for #bioclipse, 2009-07-07

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All times shown according to UTC.

Time Nick Message
05:25 egonw joined #bioclipse
05:50 egonw_ joined #bioclipse
06:00 olass joined #bioclipse
06:00 egonw_ moin
06:00 zarah hi egonw_
06:00 olass moin
06:00 zarah privet olass
06:01 olass egonw.cone()
06:01 olass egonw.clone()
06:01 olass edrin: ping
06:06 edrin1 joined #bioclipse
06:06 edrin1 hi
06:06 zarah saluton edrin1
06:07 olass hi edrin1
06:09 edrin1 i think i should be online
06:11 edrin olass, egonw, noone of you is online in skype?
06:11 edrin egonw: can you join xws?
07:21 mgerlich joined #bioclipse
07:23 mgerlich joined #bioclipse
07:25 mgerlich joined #bioclipse
07:26 sneumann joined #bioclipse
07:34 olass_ joined #bioclipse
07:56 olass egonw: do you anticipate any bug fixes today?
07:56 olass else I will build 2.0 pre-release
07:58 egonw_ I have nothing on my schedule
07:59 olass ack
07:59 olass bodo? ;)
07:59 egonw_ that's post 2.0, not?
07:59 egonw_ but, yes, that is on my schedule
07:59 olass sure
07:59 egonw_ just not for 2.0.0
07:59 olass indeed
08:00 olass ok, building release
08:06 shk3 joined #bioclipse
08:07 CIA-54 bioclipse: ospjuth * r11617 /bioclipse2/trunk/ (44 files in 44 dirs): Set version to 2.0.0.v20090707 for Bioclipse 2.0 release.
08:20 shk3 hi olass
08:21 olass hi shk3
08:22 shk3 anything i can do for bc2 release?
08:23 olass well.. how about writing a verbose getting started guide for speclipse? or does that exist?
08:23 edrin joined #bioclipse
08:24 olass egonw: can you please update this wiki page: http://wiki.bioclipse.net/index.php?​title=Bioclipse_2.0_Cheminformatics
08:25 zarah olass's link is also http://tinyurl.com/dh2pte
08:25 olass egonw: please remove the things we postponed to 2.1
08:27 shk3 don't think we have a getting started guide
08:27 shk3 should that be a link on welcome page?
08:27 olass shk3: that would be really great
08:27 shk3 I think so
08:27 olass yes
08:27 olass and run in help system
08:28 shk3 I will do that later today
08:28 olass shk3: are the use cases for speclipse http://wiki.bioclipse.net/index.p​hp?title=Bioclipse2_release_plan done? please mark as green in that case
08:28 zarah olass's link is also http://tinyurl.com/5guree
08:28 shk3 will check that
08:38 CIA-54 bioclipse: ospjuth * r11618 /bioclipse2/trunk/ (2 files in 2 dirs): Updated update sites for Bioclipse 2.0 release.
08:39 CIA-54 bioclipse: ospjuth * r11619 /bioclipse2/trunk/plugins/ (4 files in 4 dirs): Set version to 2.0.0.v20090707 for Bioclipse 2.0 release.
08:39 CIA-54 bioclipse: ospjuth * r11620 /bioclipse2/trunk/plugins/ (10 files in 10 dirs): Set version to 2.0.0.v20090707 for Bioclipse 2.0 release.
08:41 olass egonw: ping
08:41 egonw pong
08:41 CIA-54 bioclipse: ospjuth * r11621 /bioclipse2/trunk/features/ (15 files in 14 dirs): Set version to 2.0.0.v20090707 for Bioclipse 2.0 release.
08:41 olass egonw: I need your help to run and commit the net.bc.doc and net.bc.doc.devel
08:41 olass since I can't run them here
08:41 egonw ack
08:42 CIA-54 bioclipse: ospjuth * r11622 /bioclipse2/trunk/plugins/ (3 files in 3 dirs): Set version to 2.0.0.v20090707 for Bioclipse 2.0 release.
08:42 CIA-54 bioclipse: ospjuth * r11623 /bioclipse2/trunk/ (10 files in 10 dirs): Set version to 2.0.0.v20090707 for Bioclipse 2.0 release.
08:43 CIA-54 bioclipse: ospjuth * r11624 /bioclipse2/trunk/features/net.bioclip​se.platform_feature/bioclipse.product: Updated product for 2.0 version.
08:45 egonw I guess we fix the wiki too today?
08:45 egonw which will be an awful amount of work...
08:45 egonw can we make a back up first
08:45 egonw to preserve the current state, for history's sake
08:49 olass should be possible
08:49 olass but IMO we can take it day by day
08:50 olass or should we make a focused effort?
08:52 olass egonw: what do you think?
08:52 olass We could make a fresh start later with a new Mediawiki
08:52 egonw we should clean up the wiki before the release
08:54 olass seems I have difficulties reaching the web hotel via phpmyadmin
08:54 olass let's hope they just have a temp problem
08:54 olass can you reach http://bioclipse.net/ ?
08:54 olass hmm, now it worked...
08:55 egonw no, cannot reach it
08:55 shk3 btw, is jonalv around?
08:55 egonw no, holiday
08:55 shk3 ah thanks
08:55 shk3 when will he be back?
08:55 olass next week
08:55 edrin ola, can you come to xws?
09:01 egonw @tell masak building net.bioclipse.doc is broken
09:01 zarah Consider it noted.
09:10 egonw @tell masak please see bug #1409
09:10 zarah Consider it noted.
09:11 egonw olass: cannot update net.bioclipse.doc docs, due to bug #1409
09:11 olass egonw: file a blocker bug
09:11 olass I thought carl had fixed that
09:11 egonw well, it's not a blocker
09:11 egonw the output is in SVN
09:11 egonw slightly outdated, but no blocker
09:11 olass ok
09:12 olass how slightly outdated?
09:12 olass but I'm fine with that I guess
09:12 olass and doc.devel?
09:13 egonw a month old
09:14 olass not good
09:14 olass masak did a lot of updates
09:14 olass last week
09:14 olass he said it was seriously broken with missing information
09:14 olass it is a blocker
09:14 olass :(
09:14 olass but I'm sure masak can fix it today
09:15 olass he's just having a wakeup failure
09:18 shk3 if I find a version number in manifest.mf for eclipse plugins making trouble, shall I commit the file without version?
09:19 egonw olass: aha...
09:19 egonw then I'll make it as blocker
09:20 olass please do
09:20 olass shk3: please explain
09:20 olass but sounds right
09:21 shk3 you came across problem with plugins like org.eclipse.x being defined as version 4.2.11 or so required and you have a different one?
09:22 olass in general, yes, but not always. Some versions are there because they are needed in a certain version
09:23 olass so saying "always remove version of eclipse plugins" is not correct
09:23 CIA-54 bioclipse: egonw * r11625 /bioclipse2/trunk/plugins/net.​bioclipse.doc.developers/doc/ (8 files): Added HTML output for Ola, as his system cannot create them yet
09:23 olass but in most cases this is true
09:23 olass shk3: if not your plugin, file a bug
09:23 shk3 well, then people who did the plugins need to have a look
09:24 olass shk3: please file bugs
09:32 shk3 olass: there is a gettings started section in help, but you want something more tutorial stylish, I think?
09:36 olass shk3: it's your show, I just suggested that users might need detailed help concerning the features
09:37 olass with screenshots
09:37 olass with data
09:37 olass for example to perform a real world task
09:37 shk3 hm
09:37 olass like a peak picking
09:37 shk3 I will try
09:37 olass or a submission to nmrshioftdb
09:37 olass you decide
09:38 shk3 can we rename the existing section?
09:38 shk3 to avoid confusion?
09:38 olass shk3: what section are you talknig about?
09:39 shk3 bioclipse users manual -> getting started
09:39 olass in your speclipse help, you can do any section
09:39 olass no
09:39 olass this is not bioclipse user manual
09:39 olass this is speclipse stuff
09:39 shk3 oh, you want something specifc for speclipse
09:39 shk3 ok
09:39 olass ??
09:39 shk3 didn't realize this
09:40 shk3 chats can be confusing...
09:40 olass shk3: at this stage, please do not write anything in the Bioclispe repo
09:40 olass in speclipse you do as you like
09:40 olass we are in the middle of sharp release
09:40 shk3 sure
09:40 shk3 I was wondering
09:40 shk3 that's why I asked
09:40 olass feel free to file bugs
09:41 olass shk3: we need to update the wiki too
09:41 shk3 yes
09:41 olass me and egonw will work on this today
09:41 olass maybe you could assist?
09:41 shk3 wiki and homepage need update
09:41 shk3 sure
09:41 olass egonw: just made a backup of the database
09:41 shk3 if i can help
09:41 egonw olass: OK
09:44 masak joined #bioclipse
09:46 olass masak: there is a blocker bug that would be great if you can fix ASAP
09:46 masak oki
09:46 zarah masak: You have new messages. Write '/msg zarah @messages' to read them.
09:47 masak @messages
09:47 olass ask egonw for details
09:47 zarah masak: 45 m 23 s ago, egonw said building net.bioclipse.doc is broken
09:47 zarah masak: 36 m 24 s ago, egonw said please see bug #1409
09:47 masak @pz
09:47 zarah masak: Pelezilla is at http://bugs.bioclipse.net
09:47 masak @pz 1409
09:47 zarah http://pele.farmbio.uu.se/cgi-bi​n/bugzilla/show_bug.cgi?id=1409
09:47 CIA-54 bioclipse: shk3 * r11626 /bioclipse2/trunk/features/net.biocl​ipse.speclipse_feature/feature.xml: removed line breaks from licence text
09:48 egonw bugger
09:49 egonw my WD Elements of 0.5TB complains about 128GB being the max...
09:49 egonw some stupid driver, file format problem...
10:00 egonw masak: thanx... I tried allowing both solutions... but did not understand the syntax :)
10:01 masak egonw: I'm reading 'man grep' right now to make sure I do. :)
10:01 egonw :)
10:10 * olass @ food
10:19 CIA-54 bioclipse: carl_masak * r11627 /bioclipse2/trunk/plugins/net.biocli​pse.doc/parse-file-for-annotations:
10:19 CIA-54 bioclipse: [doc] grep both for getNamespace and getManagerName
10:19 CIA-54 bioclipse: This during a transition period, as all managers start using the
10:19 CIA-54 bioclipse: latter form. In my workspace I can't find any managers that haven't
10:19 CIA-54 bioclipse: switched, actually. But I'll leave it in as a precaution.
10:21 CIA-54 bioclipse: shk3 * r11628 /bioclipse2/trunk/plugins/net.biocl​ipse.data.speclipse/data/speclipse/ (assinged spectra/ specmol/): more intuitive naming for folders in speclipse sample data
11:33 mgerlich joined #bioclipse
12:04 egonw masak: ping
12:05 egonw masak: my html/index.html is still not OK:
12:05 egonw <body>
12:05 egonw <ul>
12:05 egonw <li><a href='#'></a></li>
12:05 egonw something is not picked up...
12:05 masak egonw: ok.
12:05 masak egonw: I'll see if I can reporoduce that here.
12:05 egonw unfortunately...
12:05 egonw I have very little debug info...
12:05 egonw e.g. what plugin is causing that empty ID
12:06 egonw Use of uninitialized value in string comparison (cmp) at render-as-html line 38, <> line 1002.
12:06 egonw lot's of those kind of messages, though
12:06 masak yes, that shouldn't happen.
12:12 egonw masak: if you can get it to fail more safely...
12:12 egonw make some more assertions or so...
12:12 egonw then I can see which plugins it is failing on
12:12 egonw ha, the sun is back
12:12 egonw time to switch of the desk lamp
12:13 masak egonw: I installed a few such fail points last week...
12:13 egonw I guess we need more of them things...
12:16 masak ok, some interfaces fail to find their respective namespaces. notably ICDKManager and ICDKDebugManager so far...
12:16 masak hm, IDSManager, IGistManager, IInChIManager...
12:17 masak ...IMetwareManager, INmrshiftdbManager, IOWLManager...
12:20 egonw sounds like the NWOs
12:20 masak ...IReactionManager, ISenecaManager, ISpecmolManager, ISpectrumManager...
12:20 masak wow, I didn't know we had som many!
12:20 masak s/som/so/
12:20 egonw :)
12:20 CIA-54 bioclipse: shk3 * r11629 /bioclipse2/trunk/plugins/net.bioclip​se.spectrum/doc/spectrumEditor.html: icons shown in help
12:21 masak ...and IUIManager.
12:23 shk3 hm
12:23 shk3 seems mine have problems as well
12:23 shk3 I did not notice this
12:26 masak ah. I know what it is.
12:26 masak jonalv warned me of this.
12:26 olass masak: the doc plugin should only build managers in the release
12:27 masak olass: sorry, what?
12:27 olass if that's what you are talking about?
12:27 egonw olass: no, but that would be useful
12:27 masak olass: I don't know, because I didn't understant what you just said...
12:27 egonw right now it just does all managers
12:27 masak ah, ok.
12:27 olass egonw: that is incorrect
12:28 olass and unacceptable
12:28 shk3 i was wondering about that
12:28 egonw masak: OK, another one for you then
12:28 olass we can't have doc for things in crappy state
12:28 shk3 only to build those in release sounds good
12:28 olass ONLY release
12:28 masak ok, here's the problem: it used to me that manager classes implemented their manager interfaces. they don't any more. so the doc generator doesn't find them.
12:28 shk3 but then if other plugins (eg speclise) are installed from update site, the doc plugin should be updated
12:28 shk3 or so
12:28 olass shk3: not really
12:29 shk3 no?
12:29 olass speclipse should provide its own docu
12:29 olass it is not in the download
12:29 shk3 that's the other way
12:29 shk3 I was reluctant to do that as long as you provide docue
12:29 shk3 but sooner or later I have to do it
12:29 olass shk3: we can't have docu installed for features that are not installed
12:29 olass that is very wrong
12:29 shk3 totally correct
12:29 shk3 I was wondering
12:30 shk3 but i was afraid to ask
12:30 egonw olass: then we need to rework everything...
12:30 egonw and make net.bioclipse.doc
12:30 egonw not contain these things,
12:30 olass I thought it did!
12:30 egonw but make feature based docs
12:30 egonw net.bioclipse.<FEATURE>.doc
12:30 olass egonw: did you really want all unstable docs in there as well???
12:31 egonw he, it's not my script
12:31 olass no, we can't have it that way
12:31 olass egonw: well, you seemed to know it at least
12:31 shk3 plus (for my understanding) the problem is it depends on which plugins the person building has checked out
12:31 shk3 what is in there
12:31 masak ok, so I have two questions now.
12:31 shk3 and this is more or less arbitrarily, isn't it?
12:31 egonw olass: well, I saw it when you asked me to upload a new version
12:31 olass ok
12:31 egonw this morning
12:31 masak (1) how does the new way of connection managers and their interfaces work? (guess that's a jonalv question)
12:31 olass glad we caught it anyway
12:32 olass (1) no idea
12:32 masak (2) seems you want me to remove documentation of some managers. which ones?
12:32 egonw and, actually... having those scripting language docs for an arbitrary set of managers is not that bad... sub optimal, but no blocker in my opion
12:32 olass (2) only the managers in the release
12:32 masak olass: how do I know which ones that is?
12:32 egonw masak: ha, tricky...
12:32 egonw masak: let me check how you can have Perl decide on that
12:32 olass which is, the features defined in net.bioclipse.platform/feature.xml
12:33 olass hmm, I guess this is tricky
12:33 * masak checks that file
12:33 egonw masak: about 1
12:33 egonw you need to inspect two files:
12:33 egonw a) the plugin.xml and look for the net.bioclipse.scripting.contribution
12:34 egonw that refers you to the @service
12:35 egonw b) inspect fooFactory.setInitializationData()
12:35 egonw and see what Activator method is used
12:35 CIA-54 bioclipse: shk3 * r11630 /bioclipse2/trunk/plugins/​net.bioclipse.nmrshiftdb/ (6 files in 3 dirs): added a getting started section
12:35 masak egonw: um.
12:35 egonw well, it gets worse
12:35 egonw so, wait before you um...
12:36 egonw and just say...
12:36 egonw oh god
12:36 masak I think I liked the old way better.
12:36 egonw or, oh $DEITY
12:36 egonw or whatever
12:36 egonw seriously...
12:36 masak "oh boy!"
12:36 egonw not sure if there is a easy way
12:37 egonw mmm...
12:37 egonw OK, iteration 2
12:37 egonw back from the start
12:37 egonw a) think src/META-INF/spring/foo.xml
12:38 egonw look for //bean[./@class="org.springframewor​k.aop.framework.ProxyFactoryBean"]
12:38 egonw get ./property[./@name="target"]
12:38 egonw then
12:38 egonw b) in the same foo.xml
12:39 egonw look for //bean[./@id=$targetName]
12:39 egonw where $targetname := ./property[./@name="target"] (defined in a)
12:39 * egonw hopes masak is fluent in XPath
12:39 egonw c) then, the link to the interface is defined as:
12:40 egonw /bean[./@class="org.springframework​.aop.framework.ProxyFactoryBean"]/p​roperty[./@name="proxyInterfaces"]
12:40 egonw now, this will give two hits, actually
12:41 egonw one for the IJavaScriptFooManager interface
12:41 egonw and the IJavaFooManager one
12:41 egonw both extend the interface you are really interested in
12:41 egonw so,
12:41 egonw d) use the two hits to find the interface it extends
12:41 egonw which should be IFooManager
12:41 egonw that's the correct and definate way of doing it
12:42 * egonw suggests masak to look at how egonw used xpath in the net.bioclipse.docs.developers plugin
12:42 egonw or maybe masak knows a good XPath Perl plugin
12:43 masak he does.
12:43 masak but before starting on this, I would just like to say that your NWO has made baby Jesus cry.
12:44 rojasm joined #bioclipse
12:44 egonw oh, I missed that... he rose again?
12:44 egonw well, some predicted that he would come back after 2000 years...
12:44 masak not sure what position he's in.
12:45 egonw and 0 AC is a bit undefined :)
12:45 masak there is no 0 AD.
12:45 egonw no 0 AC either
12:45 masak "Anonymous Coward"?
12:45 egonw let alone 2000 AC
12:45 * masak hangs around too much on Slashdot
12:45 egonw no, no... *After* Coward
12:45 masak ah.
12:46 egonw but true...
12:46 egonw the BC/AD timeline is indeed mathematically interesting...
12:46 egonw the only integer line where 1BC and 1AD is one year
12:46 masak the kind of 'interesting' that hertz your brane.
12:46 egonw no wonder he only came recently, then :)
12:47 masak guess not.
12:51 shk3 why is 1BC and 1AD one year?
12:51 shk3 this is new for me.
12:52 masak I don't believe they are.
12:52 egonw no, they are one year apart
12:52 masak but they are sequential.
12:53 shk3 yes
12:53 shk3 that's tricky indeed
12:56 egonw fortunately, nuclear facilities are not affected by this kind of millenium bug
12:56 CIA-54 bioclipse: shk3 * r11631 /bioclipse2/trunk/features/net.bioclips​e.speclipse_feature/speclipse.product: added a speclipse product file
13:04 sneumann joined #bioclipse
13:33 CIA-54 bioclipse: shk3 * r11632 /bioclipse2/trunk/ (6 files in 4 dirs): speclipse product running and exporting
13:47 olass masak: are you working on the doc plugin?
13:47 masak olass: aye.
13:47 olass masak++
13:56 masak might not have time to do both (1) and (2), but I'm focusing on (1) now, and then we might have to do (2) manually for the release, or something.
14:04 CIA-54 bioclipse: shk3 * r11633 /bioclipse2/trunk/plugins/​net.bioclipse.nmrshiftdb/ (4 files): customization of product
14:05 shk3 olass: can I directly contribute to test plugins?
14:06 olass sure
14:06 olass test plugins are not in release
14:06 shk3 ok
14:15 CIA-54 bioclipse: shk3 * r11634 /bioclipse2/trunk/plugins/net.bioclipse.​nmrshiftdb/html/images/assignedspec.png: resized image
14:27 CIA-54 bioclipse: shk3 * r11635 /bioclipse2/trunk/plugins/ (2 files in 2 dirs): completed tests
14:31 olass http://bioclipse.blogspot.com/2009/07/wor​king-with-large-sdfiles-in-bioclipse.html
14:31 zarah olass's link is also http://tinyurl.com/kmht8y
14:32 olass egonw: look! olass made a blog post!
14:37 sneumann_ joined #bioclipse
14:39 egonw hahaha
14:39 egonw olass++
14:39 egonw and for self sarcasm
14:39 egonw olass++
14:57 masak Perl++ XPath++
14:59 masak egonw: I've got (a) and (b) working in a particular case now.
15:06 egonw good!
15:06 masak now (c) works.
15:07 masak I think I can have a commit ready today.
15:07 masak before I leave at 1800.
15:07 egonw shk3: unit tests are supposed to make assertions, please add some
15:08 masak egonw: but then they might fail! :P
15:08 egonw oh no
15:08 egonw you're right!
15:08 masak OH NOES!
15:08 masak :)
15:08 shk3 oops
15:08 shk3 no assertions?
15:08 shk3 sounds bad
15:08 masak shk3++ # at least there are tests
15:12 shk3 thanks
15:12 shk3 does "java.lang.NoClassDefFoundError: org/springframework/aop/SpringProxy"
15:12 shk3 tell you something?
15:12 shk3 I try to convert a plugin to nwo and get this when executing the methods in console
15:13 egonw check already converted plugins for the right set of deps
15:14 shk3 ah right, dependencies
15:14 shk3 they need changes as well
15:26 masak ok, got (d) working.
15:26 masak now, the generalizing step.
15:31 edrin egonw: ?
15:31 egonw yes
15:40 edrin egonw: have you read ola's mail? do you like it better? and did you modify the sections we were talking about?
15:41 egonw not finished that yet
15:41 egonw will email tonite
15:42 edrin ok
15:46 masak ok, I have all the pieces of the puzzle ready now. must leave, but will finish this tonight.
15:47 masak auf revoir!
15:47 egonw au wiedersehen!
15:48 masak :)
16:06 CIA-54 bioclipse: shk3 * r11636 /bioclipse2/trunk/plugins/net.bioclipse.bibtex/ (15 files in 7 dirs): updated bibtex plugin to nwo. tests will follow.
16:06 CIA-54 bioclipse: shk3 * r11637 /bioclipse2/trunk/plugins/net.bioclipse.s​pecmol/src/net/bioclipse/specmol/wizards/ (AssignBibtexWizard.java ChooseIdWizardPage.java): adopted to bibtex in nwo
16:20 CIA-54 bioclipse: ospjuth * r11638 /bioclipse2/trunk/plugins/ (3 files in 2 dirs): Check for null when extracting report data.
16:39 CIA-54 bioclipse: shk3 * r11639 /bioclipse2/trunk/plugins/net.bioclipse.​cml.tests/src/net/bioclipse/cml/tests/Ab​stractValidateCMLManagerPluginTest.java: added asserts
16:42 egonw @pz rounding error
16:42 zarah [1385] Possible rounding error in bon... http://tinyurl.com/ltcv9r
16:42 zarah Entire list at http://tinyurl.com/lbncn7
16:51 egonw dinner
17:14 CIA-54 bioclipse: ospjuth * r11640 /bioclipse2/trunk/plugins/net.bioclipse.ds.birt/ (8 files in 5 dirs): Initialize BIRT report in background. This greatly speeds up the first report.
17:35 egonw olass: ping
17:36 olass pong
17:36 egonw what is the blog URL?
17:36 egonw blog.bioclipse.net
17:36 egonw right?
17:37 olass http://bioclipse.blogspot.com/
17:37 egonw try my version
17:37 egonw and tell me what you get
17:37 zarah olass's link is also http://tinyurl.com/ce6etd
17:37 olass Not Found
17:37 olass The requested URL / was not found on this server.
17:37 egonw like that?
17:37 egonw not
17:38 olass no
17:38 olass don't like that
17:38 olass what are you getting at?
17:38 egonw "The rekested URL / was not found on thi server" ?
17:38 egonw prtppsdd
17:38 egonw at the end, but not now
17:38 olass you want a fwd from blog.bioclipse.net > bioclipse.blogspot.com?
17:38 egonw LOOL at the end now
17:38 egonw what is this?
17:38 egonw yes, preferably
17:38 egonw but certainly not funny talk
17:38 olass file me a bug please
17:38 olass ?
17:39 olass what are you talking about?
17:39 olass please use commomn language
17:39 * olass does not understand all this jargon
17:39 egonw what is memepasmal?
17:39 olass ?
17:41 egonw OK, seems to be a Firefox 3.5 joke or so
17:43 * egonw is not amused
17:43 olass ?
18:16 edrin egonw: did you get our mails?
18:21 egonw yes
18:27 edrin olass, egonw, first outline of mail to the reviewer is ready, see new google godc
18:27 edrin doc
18:54 CIA-54 bioclipse: ospjuth * r11641 /bioclipse2/trunk/plugins/net.bioclipse.ds/​src/net/bioclipse/ds/ui/views/DSView.java: Made default message for DSView be a String instead list of bogus tests.
19:40 steinbeck joined #bioclipse
20:08 egonw joined #bioclipse
20:40 edrin1 joined #bioclipse
20:42 egonw_ joined #bioclipse
21:48 CIA-54 bioclipse: carl_masak * r11642 /bioclipse2/trunk/plugins/net.biocli​pse.doc/parse-file-for-annotations: (log message trimmed)
21:48 CIA-54 bioclipse: [n.b.doc] nwo-tolerant class/namespace finding
21:48 CIA-54 bioclipse: Added the ability for the doc generator to assess the relationship
21:48 CIA-54 bioclipse: between a manager interface and its implementing classes and their
21:48 CIA-54 bioclipse: namespaces, through the xml files in the META-INF/spring directories
21:48 CIA-54 bioclipse: which contain this information for 'New World Order'-type managers.
21:48 CIA-54 bioclipse: The old mechanism is also kept, as there are managers which still
22:57 olass @seen masak
22:57 zarah masak was last seen 7 h 8 m 22 s ago in #bioclipse saying ':)'
22:58 * olass is tired
22:58 olass goo9d night

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