Camelia, the Perl 6 bug

IRC log for #bioclipse, 2009-07-19

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All times shown according to UTC.

Time Nick Message
06:25 egonw joined #bioclipse
08:43 olass joined #bioclipse
08:43 olass moin egonw
08:43 egonw hi olass
08:45 egonw olass: in the end, your pull request ended up in the fork queue on the github website too...
08:46 egonw no clue why it was *so* slow...
08:46 olass I see
08:46 egonw anyway... merged your patch
09:10 egonw olass: ping
09:10 olass pong
09:11 egonw are you using a mapping of the QSAR ontology to descriptors?
09:11 egonw for CDK not, I guess...
09:14 olass what is a mapping?
09:14 olass but probably not
09:14 olass can we take 5 minutes and I can describe what SPAQRL queries I need?
09:15 olass or is everything clear?
09:17 egonw let me check
09:17 egonw what's the bug number where you have written it up?
09:17 egonw @pz sparql
09:18 zarah [1107] Use SPARQL to set up descripto... http://tinyurl.com/n55t8e
09:18 zarah Entire list at http://tinyurl.com/m6zkws
09:18 egonw only queries to get different descriptor types?
10:00 olass no
10:01 olass could we talk for 5 mins about this?
10:01 olass egonw: let me know
10:01 olass maybeeven skype?
10:01 olass (faster)
10:02 olass let me know
10:38 egonw only 7 OWL DL fails left
11:30 egonw olass: ping
11:30 egonw olass: you are using the OWL in ontologies/descriptor-algorithm.owl right?
11:37 olass egonw: right
11:38 olass in teh qsar plugin
12:15 egonw joined #bioclipse
12:19 olass egonw: how's progress?
12:23 egonw good
12:23 egonw mostly done with the ontology
12:23 egonw it's almost proper OWL DL now
12:23 egonw allowing all the reasoning etc
12:23 egonw there are a couple of larger tasks...
12:23 egonw further clean up on the ontology
12:23 egonw but that is not needed for your requirements...
12:23 egonw one thing to solve in the ontology...
12:24 egonw will then upload
12:24 egonw but will leave in about 45 minutes
12:24 egonw for harry potter
12:40 egonw olass: ping
12:40 egonw olass: updated scripts:
12:40 egonw http://gist.github.com/95946
12:40 olass pong
12:40 egonw doesn't do all yet...
12:40 egonw just a quick progress update
12:40 olass oki
12:44 egonw ping
12:44 egonw please check now
12:45 egonw 1) is now implemented
12:45 egonw sparql returns a List<List<String>>
12:45 egonw and columns do, unfortunately, not have headers yet
12:45 egonw but it should be in the order as given in the SPARQL
12:46 egonw will do 2) tomorrow
12:46 egonw that requires a bit more OWL updating, I think
12:46 egonw got to go now
12:47 egonw bye
12:54 olass egonw: how/where do I get the updates?
12:55 olass did you commit the new ontology?
12:55 olass ok, will run your gist
13:04 * olass will now go out for a while
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17:31 shk3 joined #bioclipse
18:10 rojasm joined #bioclipse
18:12 rojasm elass one question maybe you can help me faster
18:12 rojasm I have this error when I start bioclipse2 with medea plugin
18:12 rojasm http://cdk.pastebin.com/m3c84eb5
18:12 zarah rojasm's link is also http://tinyurl.com/kny3hp
18:13 rojasm it is an error with org/apache/log4j
18:13 rojasm do you know what I am doing wrong
18:36 sneumann joined #bioclipse
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20:15 sneumann joined #bioclipse
20:48 sneumann_ joined #bioclipse
22:27 * olass needs to go to bed
22:27 olass zarah: good night
22:27 zarah olass: you've just exceeded my capabilities :/
22:27 olass indeed

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